Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.47016 * 2 1 4 4 N 1.32544 * 120.42409 * 89.99817 * 3 2 1 5 5 C 1.31720 * 120.98314 * 180.02562 * 4 3 2 6 6 N 1.31825 * 121.86639 * 359.97438 * 5 4 3 7 7 C 1.32737 * 120.73638 * 0.02562 * 6 5 4 8 8 O 1.35571 * 120.52252 * 179.97438 * 7 6 5 9 9 C 1.42909 * 116.99684 * 0.02562 * 8 7 6 10 10 H 1.08996 * 110.88656 * 330.70358 * 9 8 7 11 11 C 1.55153 * 111.00277 * 206.82452 * 9 8 7 12 12 C 1.54369 * 102.92043 * 206.45268 * 11 9 8 13 13 N 1.47023 * 107.28527 * 22.14233 * 12 11 9 14 14 C 1.36944 * 125.64522 * 181.06014 * 13 12 11 15 15 H 1.07998 * 119.99462 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00153 * 0.03468 * 14 13 12 17 17 N 1.31617 * 119.99965 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99944 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47255 * 59.99733 * 18 16 14 20 20 H 1.48499 * 109.46957 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46813 * 299.99631 * 18 16 14 22 22 C 1.47423 * 108.70625 * 1.08761 * 13 12 11 23 23 C 1.38351 * 120.42871 * 270.01806 * 3 2 1 24 24 F 1.35108 * 120.84635 * 359.95984 * 23 3 2 25 25 H 1.09005 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47315 * 299.99971 * 1 2 3 27 27 H 1.09002 * 109.47230 * 60.00060 * 1 2 3 28 28 H 1.09004 * 109.47890 * 240.00396 * 2 1 3 29 29 H 1.09002 * 109.47230 * 119.99940 * 2 1 3 30 30 H 1.08001 * 119.07048 * 180.02562 * 5 4 3 31 31 H 1.09002 * 110.71973 * 324.78809 * 11 9 8 32 32 H 1.08999 * 110.72508 * 88.06105 * 11 9 8 33 33 H 1.08995 * 109.85040 * 262.72986 * 12 11 9 34 34 H 1.09002 * 110.03085 * 141.64563 * 12 11 9 35 35 H 0.96996 * 119.99817 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.37116 * 217.03783 * 22 13 12 37 37 H 1.09000 * 110.45928 * 94.76004 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2560 2.0537 1.1429 5 6 2.6945 3.2957 1.1558 6 7 2.9301 3.9621 0.0431 7 6 2.7304 3.3971 -1.1413 8 8 2.9736 4.0867 -2.2830 9 6 3.4477 5.4275 -2.1424 10 1 3.0780 5.8757 -1.2202 11 6 3.0577 6.2871 -3.3738 12 6 4.1533 7.3744 -3.3967 13 7 5.3094 6.8452 -2.6583 14 6 6.4841 7.5113 -2.4312 15 1 7.2771 7.0333 -1.8753 16 6 6.6557 8.8009 -2.9155 17 7 5.6894 9.3833 -3.5933 18 14 8.2585 9.7092 -2.6063 19 1 9.3828 8.9477 -3.2073 20 1 8.1896 11.0584 -3.2226 21 1 8.4772 9.8431 -1.1436 22 6 4.9947 5.4787 -2.2035 23 6 2.2655 2.0816 -1.1929 24 9 2.0494 1.4693 -2.3778 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8667 3.7816 2.1048 31 1 3.0876 5.6906 -4.2856 32 1 2.0731 6.7338 -3.2362 33 1 3.7867 8.2794 -2.9124 34 1 4.4396 7.5944 -4.4252 35 1 5.8092 10.2845 -3.9313 36 1 5.4194 5.3003 -1.2157 37 1 5.3707 4.7441 -2.9156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226064736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -8.472348 kcal Electronic energy + Delta-G solvation = -21852.300823 eV Core-core repulsion = 18352.691487 eV Total energy + Delta-G solvation = -3499.609336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.01262 -41.26564 -39.01247 -36.54153 -35.03386 -32.57950 -32.04424 -30.63720 -29.28592 -27.46489 -25.44422 -24.50367 -24.24903 -22.27511 -20.56165 -20.22010 -18.51394 -18.37151 -17.52619 -16.94159 -16.50322 -15.89488 -14.88841 -14.77633 -14.56325 -14.25854 -14.24109 -14.10617 -13.71232 -13.44496 -13.01167 -12.71270 -12.46726 -12.10428 -11.98743 -11.83261 -11.54613 -11.28542 -10.99820 -10.83231 -10.69833 -10.40607 -10.18006 -10.00976 -9.94751 -9.73842 -9.45752 -8.87584 -8.64678 -6.91499 -5.76147 -3.10814 0.56681 0.85995 2.70001 3.39418 3.43267 3.44683 3.45056 3.70596 3.84467 3.87740 4.40318 4.48230 4.61907 4.92786 4.95532 5.17717 5.21560 5.33425 5.40377 5.50680 5.54338 5.62224 5.66791 5.69919 5.83418 5.96231 6.18910 6.32575 6.38294 6.49843 6.58868 6.68311 7.25245 7.48178 7.51102 7.75311 7.83167 8.18537 9.15680 9.75174 10.39421 11.35747 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.003674 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.579085 B = 7619.629485 C = 7992.168772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.175 3.825 4 N -0.525 5.525 5 C 0.331 3.669 6 N -0.549 5.549 7 C 0.356 3.644 8 O -0.281 6.281 9 C 0.068 3.932 10 H 0.101 0.899 11 C -0.139 4.139 12 C 0.180 3.820 13 N -0.600 5.600 14 C -0.231 4.231 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.923 5.923 18 Si 0.916 3.084 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.127 3.873 23 C -0.030 4.030 24 F -0.115 7.115 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.207 0.793 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.254 0.746 36 H 0.046 0.954 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 -16.141 7.136 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.031 3.969 4 N -0.244 5.244 5 C 0.044 3.956 6 N -0.280 5.280 7 C 0.167 3.833 8 O -0.183 6.183 9 C 0.011 3.989 10 H 0.119 0.881 11 C -0.177 4.177 12 C 0.055 3.945 13 N -0.328 5.328 14 C -0.359 4.359 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.746 3.254 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.000 4.000 23 C -0.056 4.056 24 F -0.094 7.094 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.224 0.776 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.290 -15.520 7.513 20.081 hybrid contribution 0.790 0.337 -0.763 1.149 sum -9.500 -15.184 6.750 19.141 Atomic orbital electron populations 1.21697 0.93221 1.02693 1.02632 1.20535 0.97182 0.88931 1.04689 1.21724 0.91776 0.97360 0.86047 1.68320 1.17020 1.10974 1.28124 1.24823 0.88233 0.86502 0.96085 1.68289 1.22705 1.39099 0.97867 1.20381 0.87975 0.87982 0.86999 1.86351 1.77509 1.29485 1.24960 1.24067 0.96764 0.76789 1.01260 0.88085 1.23129 1.00790 0.97715 0.96091 1.21212 0.83735 0.91948 0.97591 1.44307 1.14572 1.10682 1.63272 1.19018 0.90838 0.96036 1.29975 0.90320 1.24818 0.98288 0.97021 1.00138 1.69924 1.31686 1.14399 1.40997 0.86145 0.82602 0.78902 0.77785 1.21099 1.21514 1.21051 1.21786 0.90745 0.89441 0.98010 1.18325 1.12186 0.91310 0.83740 1.91521 1.92855 1.81917 1.43093 0.91272 0.91930 0.92376 0.89320 0.88678 0.77628 0.91118 0.91249 0.92937 0.93065 0.93542 0.93564 0.95660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.89 37.15 0.37 -0.70 16 2 C -0.08 -0.64 6.11 -27.88 -0.17 -0.81 16 3 C 0.18 2.08 6.08 -82.24 -0.50 1.58 16 4 N -0.53 -6.30 10.37 -10.82 -0.11 -6.42 16 5 C 0.33 3.99 12.28 -92.19 -1.13 2.86 16 6 N -0.55 -8.31 8.84 -14.59 -0.13 -8.44 16 7 C 0.36 5.70 7.53 -16.65 -0.13 5.58 16 8 O -0.28 -5.04 9.86 -18.41 -0.18 -5.23 16 9 C 0.07 1.30 3.30 -24.59 -0.08 1.21 16 10 H 0.10 1.95 7.09 -51.93 -0.37 1.58 16 11 C -0.14 -2.69 6.69 -24.87 -0.17 -2.86 16 12 C 0.18 4.38 5.38 -3.04 -0.02 4.37 16 13 N -0.60 -15.67 3.39 -170.05 -0.58 -16.25 16 14 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 18 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.80 6.97 -2.53 -0.02 2.78 16 23 C -0.03 -0.43 7.32 -39.03 -0.29 -0.71 16 24 F -0.12 -1.62 16.50 2.25 0.04 -1.58 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.69 7.71 -51.93 -0.40 0.29 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 34 H 0.05 1.36 7.50 -51.93 -0.39 0.98 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -31.03 316.49 -7.91 -38.94 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.89 Total: -2.84 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.38 Total: 6.37 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.25 Total: -57.49 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.03 -7.91 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226064736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.472 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds