Wall clock time and date at job start Tue Mar 31 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35901 * 116.99836 * 2 1 4 4 C 1.38751 * 120.01223 * 0.02562 * 3 2 1 5 5 C 1.38383 * 120.02335 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.96723 * 179.97438 * 5 4 3 7 7 C 1.38417 * 120.06559 * 0.02562 * 5 4 3 8 8 C 1.38715 * 120.02494 * 0.02562 * 7 5 4 9 9 O 1.35901 * 120.01045 * 179.97438 * 8 7 5 10 10 C 1.42904 * 116.99690 * 175.40316 * 9 8 7 11 11 H 1.09000 * 110.63910 * 328.52432 * 10 9 8 12 12 C 1.55157 * 110.71699 * 205.38122 * 10 9 8 13 13 C 1.54915 * 101.57943 * 206.13160 * 12 10 9 14 14 N 1.47422 * 104.83068 * 37.01015 * 13 12 10 15 15 C 1.36938 * 125.64474 * 155.82997 * 14 13 12 16 16 H 1.07992 * 120.00472 * 332.53634 * 15 14 13 17 17 C 1.38820 * 119.99551 * 152.53025 * 15 14 13 18 18 N 1.31617 * 119.99764 * 160.88170 * 17 15 14 19 19 Si 1.86801 * 120.00147 * 340.88239 * 17 15 14 20 20 H 1.48503 * 109.47109 * 84.79475 * 19 17 15 21 21 H 1.48495 * 109.47150 * 204.79056 * 19 17 15 22 22 H 1.48503 * 109.46961 * 324.79335 * 19 17 15 23 23 C 1.47313 * 108.73640 * 335.71675 * 14 13 12 24 24 C 1.38632 * 120.01269 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47815 * 59.99791 * 1 2 3 26 26 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46974 * 299.99496 * 1 2 3 28 28 H 1.07993 * 119.98950 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.98927 * 179.97438 * 7 5 4 30 30 H 1.08994 * 111.00749 * 324.20532 * 12 10 9 31 31 H 1.09005 * 111.00392 * 88.05909 * 12 10 9 32 32 H 1.08999 * 110.36349 * 155.84687 * 13 12 10 33 33 H 1.08995 * 110.36671 * 278.05836 * 13 12 10 34 34 H 0.96997 * 119.99862 * 180.02562 * 18 17 15 35 35 H 1.09008 * 110.06222 * 241.87203 * 23 14 13 36 36 H 1.09000 * 109.85254 * 120.61178 * 23 14 13 37 37 H 1.08004 * 120.03094 * 359.74643 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3747 0.0005 5 6 1.9184 3.6078 0.0011 6 9 1.1817 4.7403 0.0011 7 6 3.3005 3.6822 0.0005 8 6 4.0581 2.5202 -0.0011 9 8 5.4152 2.5935 -0.0021 10 6 6.1315 1.3610 0.0983 11 1 5.5694 0.6369 0.6881 12 6 7.5390 1.5924 0.7089 13 6 8.3338 0.4011 0.1183 14 7 7.8085 0.2379 -1.2495 15 6 8.4753 -0.3399 -2.2967 16 1 9.5546 -0.3215 -2.3258 17 6 7.7636 -0.9494 -3.3210 18 7 8.3399 -1.1663 -4.4842 19 14 5.9880 -1.4618 -3.0482 20 1 5.0940 -0.3037 -3.3026 21 1 5.6433 -2.5668 -3.9784 22 1 5.8154 -1.9222 -1.6470 23 6 6.4466 0.7969 -1.3031 24 6 3.4303 1.2838 -0.0005 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2120 2.3182 0.0014 29 1 3.7893 4.6452 0.0005 30 1 7.9569 2.5432 0.3782 31 1 7.5063 1.5392 1.7971 32 1 9.3987 0.6320 0.0907 33 1 8.1570 -0.5007 0.7045 34 1 7.8425 -1.5918 -5.2000 35 1 5.7311 0.0147 -1.5572 36 1 6.4034 1.5962 -2.0428 37 1 4.0192 0.3785 0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226884046.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:57 Heat of formation + Delta-G solvation = -55.443396 kcal Electronic energy + Delta-G solvation = -22117.315237 eV Core-core repulsion = 18583.376332 eV Total energy + Delta-G solvation = -3533.938904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.09732 -40.62358 -39.35717 -37.36205 -35.90420 -32.47555 -30.63174 -30.25739 -29.39486 -28.08014 -27.45288 -24.49517 -23.03550 -22.48204 -20.72768 -20.39723 -19.06904 -17.30450 -17.13863 -16.71961 -16.40262 -16.19977 -16.07566 -15.69863 -15.54293 -14.73016 -14.55809 -14.36572 -13.97073 -13.20860 -13.07805 -12.72632 -12.56814 -12.41431 -12.23036 -12.09924 -11.78256 -11.51101 -11.32852 -11.19541 -11.04658 -10.62626 -10.55505 -10.24781 -9.89678 -9.47100 -8.65108 -8.57239 -8.31730 -7.04039 -6.00428 -3.38313 1.01637 1.19480 2.86494 3.14522 3.32859 3.43507 3.43855 3.47115 4.14395 4.49795 4.71308 4.75787 4.78733 4.87379 4.90029 4.94857 4.98639 5.08770 5.19853 5.22130 5.26521 5.34555 5.43957 5.76836 5.87524 5.89626 5.99138 6.09028 6.12633 6.27445 6.39999 6.47765 6.56729 6.68813 7.07413 7.41580 7.71801 8.27793 8.77203 9.62352 10.11650 11.15847 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.005550 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.110553 B = 5043.793270 C = 5884.295042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.196 3.804 4 C -0.288 4.288 5 C 0.175 3.825 6 F -0.133 7.133 7 C -0.227 4.227 8 C 0.207 3.793 9 O -0.290 6.290 10 C 0.065 3.935 11 H 0.086 0.914 12 C -0.123 4.123 13 C 0.131 3.869 14 N -0.605 5.605 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.905 5.905 19 Si 0.886 3.114 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.276 1.276 23 C 0.102 3.898 24 C -0.254 4.254 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 6.507 12.375 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.150 3.850 4 C -0.308 4.308 5 C 0.156 3.844 6 F -0.111 7.111 7 C -0.247 4.247 8 C 0.160 3.840 9 O -0.202 6.202 10 C 0.008 3.992 11 H 0.103 0.897 12 C -0.161 4.161 13 C 0.006 3.994 14 N -0.334 5.334 15 C -0.374 4.374 16 H 0.110 0.890 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.229 1.229 22 H -0.203 1.203 23 C -0.023 4.023 24 C -0.274 4.274 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.164 0.836 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.609 6.404 12.116 20.031 hybrid contribution -1.582 -0.290 -0.073 1.610 sum -16.190 6.114 12.043 21.084 Atomic orbital electron populations 1.23140 0.77958 1.04285 1.01637 1.86142 1.21772 1.26252 1.87907 1.18278 0.91184 0.83779 0.91780 1.20931 1.00968 0.90955 1.17935 1.16813 0.88175 0.81407 0.98023 1.91508 1.76850 1.49274 1.93517 1.20114 0.91241 0.98791 1.14522 1.18258 0.83474 0.91933 0.90334 1.86173 1.13830 1.33868 1.86341 1.23750 0.92885 0.83909 0.98612 0.89653 1.22901 0.92494 1.01234 0.99482 1.21683 0.97412 0.93900 0.86374 1.44642 1.13236 1.69072 1.06444 1.18631 0.92080 1.29794 0.96928 0.89018 1.25190 0.97820 0.98191 0.95895 1.69797 1.37612 1.45266 1.02124 0.86886 0.86231 0.78018 0.77149 1.21041 1.22865 1.20264 1.22157 0.89275 0.96798 0.94117 1.20614 0.92700 0.98576 1.15494 0.92284 0.87908 0.92355 0.84203 0.83645 0.89764 0.90541 0.92364 0.95260 0.92538 0.95080 0.92824 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.08 10.49 -19.43 -0.20 -4.28 16 3 C 0.20 2.77 6.68 -39.25 -0.26 2.50 16 4 C -0.29 -3.57 9.01 -39.34 -0.35 -3.92 16 5 C 0.18 2.29 7.29 -39.46 -0.29 2.00 16 6 F -0.13 -1.67 17.27 2.25 0.04 -1.63 16 7 C -0.23 -3.15 9.96 -39.34 -0.39 -3.54 16 8 C 0.21 3.24 6.68 -39.25 -0.26 2.98 16 9 O -0.29 -4.87 9.86 -19.43 -0.19 -5.06 16 10 C 0.06 1.12 2.75 -24.90 -0.07 1.06 16 11 H 0.09 1.37 6.10 -51.93 -0.32 1.05 16 12 C -0.12 -1.93 6.81 -24.58 -0.17 -2.09 16 13 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 14 N -0.61 -14.66 3.10 -169.84 -0.53 -15.19 16 15 C -0.25 -7.03 10.55 -15.06 -0.16 -7.19 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.03 0.85 5.45 -17.43 -0.09 0.75 16 18 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 19 Si 0.89 23.07 24.47 -169.99 -4.16 18.91 16 20 H -0.28 -7.25 6.85 56.52 0.39 -6.86 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.28 -7.01 6.99 56.52 0.40 -6.62 16 23 C 0.10 2.26 5.30 -2.91 -0.02 2.24 16 24 C -0.25 -4.00 8.89 -39.28 -0.35 -4.35 16 25 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.14 1.36 6.29 -52.49 -0.33 1.03 16 29 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.03 0.75 3.22 -51.92 -0.17 0.58 16 36 H 0.05 1.27 8.06 -51.93 -0.42 0.86 16 37 H 0.15 2.39 5.75 -52.48 -0.30 2.09 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -31.99 306.41 -5.53 -37.53 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.45 Total: -1.77 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.44 Total: -5.88 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.25 Total: -42.44 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.40 Total: -9.34 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.16 Total: 18.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.99 -5.53 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226884046.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds