Wall clock time and date at job start Tue Mar 31 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35447 * 116.99580 * 2 1 4 4 N 1.32299 * 119.14201 * 359.97438 * 3 2 1 5 5 C 1.32905 * 120.81047 * 180.02562 * 4 3 2 6 6 O 1.35537 * 120.44243 * 179.97438 * 5 4 3 7 7 C 1.39037 * 119.11959 * 0.02562 * 5 4 3 8 8 C 1.39000 * 118.41873 * 0.02562 * 7 5 4 9 9 O 1.35532 * 120.44262 * 179.97438 * 8 7 5 10 10 C 1.42898 * 117.00250 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.64143 * 328.31942 * 10 9 8 12 12 C 1.55159 * 110.87356 * 205.06667 * 10 9 8 13 13 C 1.54909 * 101.57990 * 206.06339 * 12 10 9 14 14 N 1.47743 * 104.83995 * 37.09908 * 13 12 10 15 15 C 1.36946 * 125.82120 * 155.82347 * 14 13 12 16 16 H 1.08000 * 119.99920 * 179.90231 * 15 14 13 17 17 C 1.38814 * 119.99867 * 359.91271 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47020 * 108.53125 * 335.74644 * 14 13 12 24 24 N 1.32276 * 119.13553 * 180.27700 * 3 2 1 25 25 H 1.09004 * 109.47172 * 60.00501 * 1 2 3 26 26 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47148 * 300.00316 * 1 2 3 28 28 H 0.96693 * 114.00163 * 270.03123 * 6 5 4 29 29 H 1.08003 * 120.79246 * 180.02562 * 7 5 4 30 30 H 1.08994 * 111.00854 * 324.14386 * 12 10 9 31 31 H 1.09001 * 110.99961 * 87.95513 * 12 10 9 32 32 H 1.09003 * 110.36363 * 155.85234 * 13 12 10 33 33 H 1.08996 * 110.37070 * 278.06073 * 13 12 10 34 34 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88367 * 241.68734 * 23 14 13 36 36 H 1.09000 * 109.88319 * 120.67352 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2069 0.0000 4 7 1.3067 2.3055 -0.0005 5 6 1.8752 3.5068 -0.0010 6 8 1.1128 4.6274 -0.0021 7 6 3.2626 3.5987 -0.0016 8 6 4.0035 2.4227 -0.0021 9 8 5.3582 2.4645 -0.0032 10 6 6.0459 1.2119 -0.0031 11 1 5.4704 0.4576 0.5334 12 6 7.4636 1.3597 0.6100 13 6 8.2221 0.1966 -0.0767 14 7 7.6830 0.1527 -1.4516 15 6 8.3242 -0.3595 -2.5479 16 1 7.8395 -0.3446 -3.5129 17 6 9.5971 -0.8980 -2.4188 18 7 10.1880 -0.9158 -1.2428 19 14 10.4714 -1.5973 -3.9141 20 1 10.6344 -0.5318 -4.9356 21 1 11.8074 -2.1066 -3.5131 22 1 9.6675 -2.7091 -4.4825 23 6 6.3398 0.7503 -1.4461 24 7 3.3657 1.2563 -0.0056 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.8915 4.9517 -0.8857 29 1 3.7529 4.5610 -0.0016 30 1 7.9041 2.3217 0.3485 31 1 7.4375 1.2253 1.6914 32 1 9.2925 0.4013 -0.0967 33 1 8.0258 -0.7423 0.4410 34 1 11.0776 -1.2918 -1.1528 35 1 5.6030 0.0091 -1.7555 36 1 6.3116 1.6053 -2.1217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227000101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:20 Heat of formation + Delta-G solvation = -17.500657 kcal Electronic energy + Delta-G solvation = -21848.408564 eV Core-core repulsion = 18336.034942 eV Total energy + Delta-G solvation = -3512.373622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51711 -39.36238 -38.75891 -37.24810 -36.13813 -32.85672 -32.30913 -30.94239 -29.25836 -27.71345 -27.30498 -24.81899 -23.96140 -23.51802 -20.67708 -20.33544 -19.70719 -18.51882 -17.65120 -17.03840 -16.87611 -16.61025 -15.63981 -15.38736 -15.18837 -14.72912 -14.66975 -14.13443 -14.10198 -13.17113 -12.95837 -12.50417 -12.41825 -12.11225 -11.87017 -11.59752 -11.29902 -11.02714 -10.96119 -10.77061 -10.74334 -10.47428 -10.16006 -9.86554 -9.74830 -9.60991 -9.48911 -8.89361 -8.67710 -6.87504 -5.67831 -3.09567 0.76095 1.00675 2.23441 2.90424 3.24882 3.41206 3.44974 3.46610 3.57197 4.41574 4.47378 4.54692 4.97050 4.99560 5.07471 5.14245 5.28386 5.36969 5.38123 5.46835 5.54055 5.72736 5.77843 6.22288 6.39558 6.47054 6.53724 6.55401 6.68289 6.90955 7.08814 7.34080 7.43737 7.58844 7.79479 7.93614 8.30837 9.18416 9.78989 10.42861 11.37049 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025907 B = 0.003843 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.546532 B = 7284.537133 C = 7718.712565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.284 6.284 3 C 0.560 3.440 4 N -0.614 5.614 5 C 0.417 3.583 6 O -0.472 6.472 7 C -0.301 4.301 8 C 0.423 3.577 9 O -0.278 6.278 10 C 0.072 3.928 11 H 0.097 0.903 12 C -0.138 4.138 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.924 5.924 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.125 3.875 24 N -0.577 5.577 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.410 0.590 29 H 0.161 0.839 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.019 0.981 34 H 0.254 0.746 35 H 0.032 0.968 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.749 8.244 3.560 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.184 6.184 3 C 0.257 3.743 4 N -0.361 5.361 5 C 0.233 3.767 6 O -0.280 6.280 7 C -0.326 4.326 8 C 0.237 3.763 9 O -0.181 6.181 10 C 0.016 3.984 11 H 0.115 0.885 12 C -0.176 4.176 13 C 0.029 3.971 14 N -0.328 5.328 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.001 4.001 24 N -0.321 5.321 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.270 0.730 29 H 0.178 0.822 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.645 7.213 4.090 19.497 hybrid contribution 0.374 0.387 -1.217 1.330 sum -17.271 7.599 2.873 19.087 Atomic orbital electron populations 1.23007 0.75509 1.03586 1.02902 1.86149 1.23449 1.22232 1.86620 1.19735 0.84405 0.83951 0.86245 1.67509 1.42389 0.98803 1.27361 1.18488 0.86014 0.84337 0.87845 1.84702 1.71463 1.37394 1.34407 1.21642 0.93205 0.99910 1.17840 1.19529 0.85602 0.87225 0.83941 1.86374 1.11822 1.35306 1.84549 1.23837 0.92877 0.82348 0.99324 0.88476 1.23274 0.92362 1.02664 0.99335 1.22038 1.00540 0.91706 0.82829 1.44429 1.12302 1.70463 1.05631 1.19036 0.97269 1.31677 0.87108 0.90420 1.24786 0.97248 1.01279 0.97206 1.69736 1.15164 1.50994 1.21327 0.86111 0.78765 0.78823 0.81548 1.21122 1.21497 1.21157 1.21567 0.89402 0.96421 0.92743 1.67161 1.08705 1.29193 1.26996 0.91824 0.87776 0.91813 0.73017 0.82171 0.90782 0.91363 0.86815 0.96332 0.93549 0.94964 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 10.36 101.05 1.05 1.46 16 2 O -0.28 -3.95 10.55 -18.03 -0.19 -4.14 16 3 C 0.56 8.50 8.49 -91.30 -0.77 7.72 16 4 N -0.61 -8.25 9.24 -14.86 -0.14 -8.39 16 5 C 0.42 5.00 7.82 -16.79 -0.13 4.86 16 6 O -0.47 -4.19 13.57 -18.30 -0.25 -4.44 16 7 C -0.30 -3.83 10.07 -39.00 -0.39 -4.22 16 8 C 0.42 6.73 7.51 -16.79 -0.13 6.60 16 9 O -0.28 -4.84 9.86 -18.29 -0.18 -5.02 16 10 C 0.07 1.39 3.15 -24.90 -0.08 1.31 16 11 H 0.10 1.88 7.16 -51.93 -0.37 1.51 16 12 C -0.14 -2.68 6.82 -24.58 -0.17 -2.85 16 13 C 0.15 3.75 5.91 -2.35 -0.01 3.74 16 14 N -0.60 -15.83 3.41 -169.81 -0.58 -16.41 16 15 C -0.22 -6.31 10.28 -15.05 -0.15 -6.47 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.83 10.11 55.49 0.56 -26.27 16 19 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.13 2.81 7.01 -3.06 -0.02 2.79 16 24 N -0.58 -9.77 8.89 -14.86 -0.13 -9.90 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.41 1.42 9.06 45.56 0.41 1.83 16 29 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.11 3.07 5.88 -51.93 -0.31 2.77 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -33.09 310.66 -5.76 -38.85 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.61 Total: -0.63 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: -0.91 Total: 14.56 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.29 Total: -60.97 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.62 Total: -13.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.09 -5.76 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227000101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.350 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds