Wall clock time and date at job start Tue Mar 31 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35447 * 116.99580 * 2 1 4 4 N 1.32299 * 119.14201 * 359.97438 * 3 2 1 5 5 C 1.32905 * 120.81047 * 180.02562 * 4 3 2 6 6 O 1.35537 * 120.44243 * 179.97438 * 5 4 3 7 7 C 1.39037 * 119.11959 * 0.02562 * 5 4 3 8 8 C 1.39000 * 118.41873 * 0.02562 * 7 5 4 9 9 O 1.35532 * 120.44262 * 179.97438 * 8 7 5 10 10 C 1.42898 * 117.00250 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.64143 * 328.31942 * 10 9 8 12 12 C 1.55159 * 110.87356 * 205.06667 * 10 9 8 13 13 C 1.54909 * 101.57990 * 206.06339 * 12 10 9 14 14 N 1.47743 * 104.83995 * 37.09908 * 13 12 10 15 15 C 1.36946 * 125.82120 * 155.82347 * 14 13 12 16 16 H 1.08000 * 119.99920 * 179.90231 * 15 14 13 17 17 C 1.38814 * 119.99867 * 359.91271 * 15 14 13 18 18 N 1.31617 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47348 * 59.99174 * 19 17 15 21 21 H 1.48492 * 109.47116 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46964 * 299.99484 * 19 17 15 23 23 C 1.47020 * 108.53125 * 335.74644 * 14 13 12 24 24 N 1.32276 * 119.13553 * 180.27700 * 3 2 1 25 25 H 1.09004 * 109.47172 * 60.00501 * 1 2 3 26 26 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47148 * 300.00316 * 1 2 3 28 28 H 0.96693 * 114.00163 * 270.03123 * 6 5 4 29 29 H 1.08003 * 120.79246 * 180.02562 * 7 5 4 30 30 H 1.08994 * 111.00854 * 324.14386 * 12 10 9 31 31 H 1.09001 * 110.99961 * 87.95513 * 12 10 9 32 32 H 1.09003 * 110.36363 * 155.85234 * 13 12 10 33 33 H 1.08996 * 110.37070 * 278.06073 * 13 12 10 34 34 H 0.96998 * 119.99524 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88367 * 241.68734 * 23 14 13 36 36 H 1.09000 * 109.88319 * 120.67352 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2069 0.0000 4 7 1.3067 2.3055 -0.0005 5 6 1.8752 3.5068 -0.0010 6 8 1.1128 4.6274 -0.0021 7 6 3.2626 3.5987 -0.0016 8 6 4.0035 2.4227 -0.0021 9 8 5.3582 2.4645 -0.0032 10 6 6.0459 1.2119 -0.0031 11 1 5.4704 0.4576 0.5334 12 6 7.4636 1.3597 0.6100 13 6 8.2221 0.1966 -0.0767 14 7 7.6830 0.1527 -1.4516 15 6 8.3242 -0.3595 -2.5479 16 1 7.8395 -0.3446 -3.5129 17 6 9.5971 -0.8980 -2.4188 18 7 10.1880 -0.9158 -1.2428 19 14 10.4714 -1.5973 -3.9141 20 1 10.6344 -0.5318 -4.9356 21 1 11.8074 -2.1066 -3.5131 22 1 9.6675 -2.7091 -4.4825 23 6 6.3398 0.7503 -1.4461 24 7 3.3657 1.2563 -0.0056 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.8915 4.9517 -0.8857 29 1 3.7529 4.5610 -0.0016 30 1 7.9041 2.3217 0.3485 31 1 7.4375 1.2253 1.6914 32 1 9.2925 0.4013 -0.0967 33 1 8.0258 -0.7423 0.4410 34 1 11.0776 -1.2918 -1.1528 35 1 5.6030 0.0091 -1.7555 36 1 6.3116 1.6053 -2.1217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227000101.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:20 Heat of formation + Delta-G solvation = -47.428418 kcal Electronic energy + Delta-G solvation = -21849.706329 eV Core-core repulsion = 18336.034942 eV Total energy + Delta-G solvation = -3513.671387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.59404 -40.65458 -39.69933 -38.53609 -37.54585 -34.42626 -33.79098 -32.11594 -31.10018 -29.09335 -28.47892 -26.67533 -25.09706 -24.69100 -22.24057 -22.13386 -20.77148 -19.68365 -19.03465 -18.52847 -18.14801 -17.67938 -16.91311 -16.62399 -16.53773 -16.17717 -15.81413 -15.61036 -15.51479 -14.78105 -14.33688 -14.12016 -13.71196 -13.37562 -13.25307 -12.97977 -12.90017 -12.67759 -12.35540 -12.23348 -12.07589 -12.00692 -11.97797 -11.79599 -11.43918 -11.05136 -10.77769 -10.61042 -9.96784 -8.96427 -7.81054 -5.26690 -0.22304 -0.10348 1.22633 1.47322 1.50910 1.57327 1.75392 2.25710 2.48202 2.50802 3.29567 3.37034 3.46588 3.64957 3.67546 3.91431 4.03882 4.12592 4.14822 4.39879 4.40911 4.52147 4.61270 4.69233 4.73316 4.84984 4.93313 4.99457 5.41229 5.52383 5.54230 5.71854 5.84893 6.05800 6.25118 6.49488 6.86841 7.05639 7.70234 8.34101 9.21615 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025907 B = 0.003843 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.546532 B = 7284.537133 C = 7718.712565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.550 3.450 4 N -0.610 5.610 5 C 0.429 3.571 6 O -0.466 6.466 7 C -0.290 4.290 8 C 0.401 3.599 9 O -0.281 6.281 10 C 0.093 3.907 11 H 0.095 0.905 12 C -0.121 4.121 13 C 0.155 3.845 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.985 3.015 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.127 3.873 24 N -0.609 5.609 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.436 0.564 29 H 0.185 0.815 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.086 0.914 33 H -0.002 1.002 34 H 0.251 0.749 35 H 0.022 0.978 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 9.518 3.406 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.205 6.205 3 C 0.247 3.753 4 N -0.356 5.356 5 C 0.244 3.756 6 O -0.278 6.278 7 C -0.315 4.315 8 C 0.216 3.784 9 O -0.184 6.184 10 C 0.036 3.964 11 H 0.113 0.887 12 C -0.160 4.160 13 C 0.030 3.970 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.812 3.188 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.000 4.000 24 N -0.354 5.354 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.086 0.914 28 H 0.300 0.700 29 H 0.202 0.798 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.016 0.984 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.239 8.520 3.919 21.403 hybrid contribution 0.656 0.053 -1.178 1.350 sum -18.583 8.573 2.741 20.648 Atomic orbital electron populations 1.23317 0.73180 1.05572 1.03323 1.86136 1.25804 1.22109 1.86448 1.19859 0.84137 0.84772 0.86568 1.67617 1.41998 0.98955 1.27053 1.18589 0.86085 0.84701 0.86217 1.84676 1.70661 1.35827 1.36606 1.21858 0.93366 0.99742 1.16512 1.19791 0.84945 0.88182 0.85522 1.86332 1.13018 1.33589 1.85420 1.23358 0.92978 0.83329 0.96732 0.88679 1.23074 0.91657 1.00591 1.00630 1.21840 0.99718 0.92785 0.82632 1.44719 1.13835 1.70589 1.05852 1.19391 0.97961 1.32261 0.87986 0.90371 1.25645 0.97861 1.01712 1.00105 1.69975 1.15128 1.51382 1.23071 0.85072 0.77270 0.78195 0.78270 1.20158 1.21481 1.20551 1.21601 0.87461 0.95751 0.95143 1.67033 1.10001 1.30227 1.28094 0.91256 0.85104 0.91415 0.69960 0.79758 0.90255 0.88282 0.89567 0.98353 0.93945 0.96003 0.95461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.36 113.37 1.17 1.84 16 2 O -0.30 -8.26 10.55 -87.44 -0.92 -9.19 16 3 C 0.55 16.23 8.49 180.59 1.53 17.76 16 4 N -0.61 -15.21 9.24 -426.49 -3.94 -19.15 16 5 C 0.43 9.11 7.82 84.72 0.66 9.77 16 6 O -0.47 -6.57 13.57 -88.41 -1.20 -7.77 16 7 C -0.29 -6.69 10.07 22.64 0.23 -6.47 16 8 C 0.40 12.28 7.51 84.71 0.64 12.92 16 9 O -0.28 -9.47 9.86 -88.36 -0.87 -10.34 16 10 C 0.09 3.55 3.15 31.78 0.10 3.65 16 11 H 0.10 3.70 7.16 -2.39 -0.02 3.68 16 12 C -0.12 -4.65 6.82 31.99 0.22 -4.44 16 13 C 0.15 7.76 5.91 86.79 0.51 8.27 16 14 N -0.62 -33.58 3.41 -691.17 -2.35 -35.93 16 15 C -0.25 -14.31 10.28 84.03 0.86 -13.44 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 17 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 18 N -0.95 -56.21 10.11 21.65 0.22 -55.99 16 19 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C 0.13 5.77 7.01 86.73 0.61 6.38 16 24 N -0.61 -20.40 8.89 -426.50 -3.79 -24.20 16 25 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 26 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.44 1.26 9.06 -74.06 -0.67 0.59 16 29 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.09 4.81 5.88 -2.39 -0.01 4.80 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 Total: -1.00 -72.34 310.66 -3.39 -75.73 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.45 Total: 5.72 kcal Atomic # 6 Polarization: 26.26 SS G_CDS: 7.00 Total: 33.26 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -9.87 Total: -135.27 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -2.99 Total: -27.30 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -72.34 -3.39 -75.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227000101.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.302 kcal (2) G-P(sol) polarization free energy of solvation -72.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds