Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36039 * 117.00439 * 2 1 4 4 C 1.38628 * 120.00261 * 0.02562 * 3 2 1 5 5 C 1.38167 * 120.02138 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.04382 * 359.97438 * 5 4 3 7 7 O 1.35973 * 119.99742 * 180.02562 * 6 5 4 8 8 C 1.42906 * 117.00178 * 184.96273 * 7 6 5 9 9 H 1.08997 * 110.88442 * 38.24612 * 8 7 6 10 10 C 1.55152 * 111.00310 * 162.16591 * 8 7 6 11 11 C 1.54332 * 103.02228 * 153.38408 * 10 8 7 12 12 N 1.47026 * 107.26317 * 338.14450 * 11 10 8 13 13 C 1.36934 * 125.64772 * 178.85015 * 12 11 10 14 14 H 1.08005 * 120.00037 * 185.76890 * 13 12 11 15 15 C 1.38815 * 120.00189 * 5.77138 * 13 12 11 16 16 N 1.31614 * 119.99773 * 353.14166 * 15 13 12 17 17 Si 1.86802 * 119.99957 * 173.14610 * 15 13 12 18 18 H 1.48497 * 109.47072 * 275.00700 * 17 15 13 19 19 H 1.48494 * 109.47267 * 35.00831 * 17 15 13 20 20 H 1.48498 * 109.46791 * 155.01184 * 17 15 13 21 21 C 1.47422 * 108.70461 * 358.58082 * 12 11 10 22 22 C 1.38682 * 120.00989 * 0.29023 * 6 5 4 23 23 C 1.38319 * 119.98037 * 359.45575 * 22 6 5 24 24 F 1.35091 * 120.02532 * 180.27152 * 23 22 6 25 25 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47219 * 300.00063 * 1 2 3 27 27 H 1.09000 * 109.46853 * 59.99971 * 1 2 3 28 28 H 1.07999 * 119.99263 * 0.04166 * 4 3 2 29 29 H 1.08004 * 119.97674 * 179.97438 * 5 4 3 30 30 H 1.08994 * 110.72435 * 271.94402 * 10 8 7 31 31 H 1.09004 * 110.71994 * 35.03886 * 10 8 7 32 32 H 1.08996 * 109.99709 * 218.66737 * 11 10 8 33 33 H 1.09001 * 109.78110 * 97.48988 * 11 10 8 34 34 H 0.97001 * 120.00138 * 179.97438 * 16 15 13 35 35 H 1.08995 * 110.37283 * 143.19592 * 21 12 11 36 36 H 1.08998 * 110.37032 * 265.52099 * 21 12 11 37 37 H 1.08004 * 120.01325 * 179.73301 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2918 2.3748 0.0005 5 6 1.9187 3.6060 0.0000 6 6 3.3037 3.6800 -0.0005 7 8 3.9197 4.8922 -0.0005 8 6 5.3445 4.8960 -0.1113 9 1 5.6827 4.1226 -0.8010 10 6 5.8651 6.2926 -0.5418 11 6 7.2941 6.3258 0.0403 12 7 7.3429 5.3433 1.1330 13 6 8.4429 5.0502 1.8942 14 1 8.4031 4.2453 2.6132 15 6 9.6090 5.7877 1.7417 16 7 9.7037 6.6768 0.7759 17 14 11.0438 5.5180 2.9071 18 1 10.8514 6.3413 4.1279 19 1 11.1128 4.0832 3.2835 20 1 12.3076 5.9153 2.2363 21 6 6.0099 4.7306 1.2779 22 6 4.0604 2.5178 -0.0066 23 6 3.4335 1.2849 -0.0008 24 9 4.1698 0.1522 -0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2133 2.3183 0.0016 29 1 1.3299 4.5114 0.0000 30 1 5.8868 6.3781 -1.6282 31 1 5.2539 7.0832 -0.1063 32 1 7.5164 7.3206 0.4261 33 1 8.0137 6.0562 -0.7327 34 1 10.5184 7.1924 0.6695 35 1 6.1031 3.6744 1.5305 36 1 5.4324 5.2541 2.0398 37 1 5.1389 2.5754 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228063413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -60.152073 kcal Electronic energy + Delta-G solvation = -21751.949294 eV Core-core repulsion = 18217.806206 eV Total energy + Delta-G solvation = -3534.143088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.78516 -40.40049 -39.23014 -37.14904 -35.73448 -32.34147 -30.89651 -29.75250 -29.06916 -27.75613 -26.96435 -24.56913 -22.99720 -22.32220 -20.41729 -20.15687 -18.71194 -17.81409 -17.28341 -16.67798 -16.30871 -16.21706 -15.18294 -14.94631 -14.89809 -14.69864 -14.35573 -14.20006 -13.90230 -13.43073 -12.96572 -12.54962 -12.40539 -12.11733 -12.06862 -11.96446 -11.68074 -11.20476 -11.02260 -10.97719 -10.78798 -10.38083 -10.18390 -10.04640 -9.91139 -9.70151 -9.03434 -8.63838 -7.78194 -6.91719 -5.78328 -3.12047 0.98749 1.26029 3.00296 3.33549 3.39131 3.44507 3.45866 3.48949 4.13362 4.46609 4.57593 4.72589 4.89790 4.93546 4.99401 5.15561 5.20279 5.26214 5.33935 5.45945 5.55774 5.62281 5.67127 5.87506 6.00586 6.07984 6.16089 6.28002 6.37924 6.46804 6.52874 6.63230 7.12278 7.46356 7.52384 7.57460 7.75655 8.17749 9.14593 9.74401 10.38834 11.33883 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.003820 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.345295 B = 7327.922880 C = 8029.910300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.047 3.953 4 C -0.142 4.142 5 C -0.130 4.130 6 C 0.140 3.860 7 O -0.299 6.299 8 C 0.062 3.938 9 H 0.081 0.919 10 C -0.133 4.133 11 C 0.177 3.823 12 N -0.602 5.602 13 C -0.233 4.233 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.920 5.920 17 Si 0.913 3.087 18 H -0.287 1.287 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.117 3.883 22 C -0.208 4.208 23 C 0.113 3.887 24 F -0.130 7.130 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.254 0.746 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 -7.939 -3.832 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.001 3.999 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.093 3.907 7 O -0.212 6.212 8 C 0.005 3.995 9 H 0.099 0.901 10 C -0.172 4.172 11 C 0.053 3.947 12 N -0.330 5.330 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.201 4.201 16 N -0.567 5.567 17 Si 0.743 3.257 18 H -0.214 1.214 19 H -0.206 1.206 20 H -0.216 1.216 21 C -0.009 4.009 22 C -0.227 4.227 23 C 0.093 3.907 24 F -0.108 7.108 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.408 -7.896 -3.809 20.389 hybrid contribution 0.851 -0.308 0.600 1.086 sum -17.557 -8.204 -3.209 19.643 Atomic orbital electron populations 1.23054 0.78411 1.03956 1.01295 1.86129 1.21263 1.25728 1.89620 1.18796 0.90588 0.85636 1.04869 1.20862 0.99997 0.90592 1.04627 1.20269 0.91467 0.98115 1.04990 1.18669 0.91813 0.84555 0.95668 1.86147 1.22756 1.25168 1.87096 1.23927 0.75867 1.00308 0.99355 0.90106 1.23012 0.99527 0.94034 1.00589 1.21227 0.88845 0.94466 0.90185 1.44330 1.05007 1.45195 1.38457 1.19047 0.89000 1.13424 1.14659 0.90268 1.24834 0.98188 0.98397 0.98698 1.69945 1.27400 1.27540 1.31807 0.86121 0.81566 0.77704 0.80299 1.21420 1.20642 1.21633 1.21979 0.88261 0.97242 0.93453 1.21303 1.02159 0.90250 1.09033 1.16641 0.85761 0.82459 1.05817 1.91504 1.76640 1.48744 1.93928 0.88246 0.92607 0.92651 0.84078 0.84251 0.91249 0.91032 0.92881 0.93309 0.93564 0.93879 0.95071 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.80 10.36 -19.86 -0.21 -4.01 16 3 C 0.05 0.61 6.69 -39.20 -0.26 0.34 16 4 C -0.14 -1.52 9.03 -39.46 -0.36 -1.88 16 5 C -0.13 -1.55 9.98 -39.44 -0.39 -1.94 16 6 C 0.14 2.05 6.64 -39.25 -0.26 1.79 16 7 O -0.30 -4.91 9.96 -19.66 -0.20 -5.10 16 8 C 0.06 1.12 2.82 -24.58 -0.07 1.05 16 9 H 0.08 1.40 6.57 -51.93 -0.34 1.06 16 10 C -0.13 -2.47 6.68 -24.89 -0.17 -2.64 16 11 C 0.18 4.23 5.38 -3.06 -0.02 4.21 16 12 N -0.60 -15.36 3.39 -170.07 -0.58 -15.93 16 13 C -0.23 -6.50 10.26 -15.06 -0.15 -6.66 16 14 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 15 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 16 N -0.92 -26.69 10.36 55.49 0.57 -26.12 16 17 Si 0.91 22.01 29.56 -169.99 -5.02 16.99 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.12 2.47 6.61 -2.53 -0.02 2.45 16 22 C -0.21 -3.15 8.71 -39.39 -0.34 -3.49 16 23 C 0.11 1.69 7.31 -39.31 -0.29 1.40 16 24 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 28 H 0.14 1.04 6.29 -52.49 -0.33 0.71 16 29 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 33 H 0.05 1.26 7.53 -51.93 -0.39 0.87 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.04 0.88 7.30 -51.93 -0.38 0.50 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.15 2.42 5.33 -52.48 -0.28 2.14 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -31.05 309.97 -6.71 -37.76 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.56 Total: -1.82 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.43 Total: -4.39 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.00 Total: -42.05 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.40 Total: -9.11 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.05 -6.71 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228063413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.394 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds