Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 116.99813 * 2 1 4 4 C 1.38751 * 120.03383 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.06590 * 179.71828 * 4 3 2 6 6 C 1.38227 * 120.14035 * 0.23515 * 5 4 3 7 7 C 1.38705 * 120.06714 * 0.02562 * 6 5 4 8 8 O 1.35956 * 120.03510 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99837 * 6.21247 * 8 7 6 10 10 C 1.53937 * 113.72723 * 255.84442 * 9 8 7 11 11 N 1.48193 * 86.09744 * 221.95808 * 10 9 8 12 12 C 1.46902 * 111.06982 * 137.52388 * 11 10 9 13 13 C 1.50701 * 109.47133 * 70.56571 * 12 11 10 14 14 H 1.07994 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99903 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46881 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47175 * 119.99596 * 17 15 13 20 20 H 1.48499 * 109.47145 * 239.99669 * 17 15 13 21 21 C 1.47957 * 90.80013 * 24.59865 * 11 10 9 22 22 C 1.38758 * 120.03459 * 180.22640 * 3 2 1 23 23 F 1.35100 * 120.06701 * 0.02971 * 22 3 2 24 24 H 1.08998 * 109.47690 * 300.00136 * 1 2 3 25 25 H 1.09008 * 109.47202 * 60.00170 * 1 2 3 26 26 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.96714 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.93414 * 180.25466 * 5 4 3 29 29 H 1.07995 * 119.96943 * 180.02562 * 6 5 4 30 30 H 1.09002 * 112.93925 * 27.40768 * 9 8 7 31 31 H 1.08997 * 113.76545 * 336.23793 * 10 9 8 32 32 H 1.08998 * 113.75821 * 107.60728 * 10 9 8 33 33 H 1.09007 * 109.46924 * 190.56161 * 12 11 10 34 34 H 1.09001 * 109.47225 * 310.55983 * 12 11 10 35 35 H 0.97000 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08991 * 113.75982 * 221.08360 * 21 11 10 37 37 H 1.09006 * 113.75538 * 89.71978 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2911 2.3754 -0.0005 5 6 1.9177 3.6069 0.0053 6 6 3.2978 3.6835 0.0069 7 6 4.0582 2.5234 0.0020 8 8 5.4156 2.5995 0.0040 9 6 5.9923 3.8989 0.1490 10 6 6.5510 4.4785 -1.1631 11 7 7.7018 4.9394 -0.3511 12 6 8.9707 4.7081 -1.0543 13 6 9.0786 5.6560 -2.2208 14 1 8.2843 6.3602 -2.4197 15 6 10.1915 5.6243 -3.0342 16 7 11.1590 4.7671 -2.7917 17 14 10.3256 6.7998 -4.4798 18 1 9.1141 7.6567 -4.5350 19 1 11.5292 7.6536 -4.3135 20 1 10.4400 6.0232 -5.7403 21 6 7.4483 3.8783 0.6483 22 6 3.4318 1.2849 -0.0047 23 9 4.1696 0.1532 -0.0100 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2126 2.3189 -0.0014 28 1 1.3279 4.5117 0.0091 29 1 3.7847 4.6475 0.0119 30 1 5.3507 4.5898 0.6958 31 1 6.8106 3.7210 -1.9025 32 1 5.9506 5.2892 -1.5758 33 1 9.8017 4.8783 -0.3697 34 1 9.0032 3.6806 -1.4167 35 1 11.9421 4.7450 -3.3637 36 1 7.5634 4.2102 1.6801 37 1 7.9709 2.9447 0.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228572395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -49.195021 kcal Electronic energy + Delta-G solvation = -21431.583189 eV Core-core repulsion = 17897.915234 eV Total energy + Delta-G solvation = -3533.667954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.60449 -40.55306 -39.72573 -38.08279 -36.21286 -32.89147 -30.67849 -29.85675 -29.07088 -27.60085 -25.81887 -25.17907 -23.07604 -22.70069 -21.24736 -19.46658 -18.98772 -17.29996 -17.06324 -16.95941 -16.44495 -16.34379 -15.48973 -15.21542 -14.93749 -14.78129 -14.57595 -14.41945 -14.21113 -13.17624 -12.98686 -12.82195 -12.42001 -12.35089 -12.14263 -11.97115 -11.77667 -11.52519 -11.26129 -11.21393 -10.93943 -10.68299 -10.32441 -10.19926 -9.76245 -9.20108 -8.53941 -8.45079 -8.29914 -7.93478 -6.08200 -4.10651 1.01221 1.09999 2.59441 3.28534 3.35706 3.37629 3.40367 3.45653 4.14428 4.38696 4.52587 4.60309 4.66469 4.75211 4.81609 4.82292 4.91232 4.98644 5.13231 5.20089 5.28067 5.58739 5.76646 5.87764 5.90568 5.99869 6.05474 6.16516 6.17979 6.31327 6.36294 6.53842 7.01047 7.15529 7.39516 7.56502 7.80428 8.02859 8.34233 8.96303 9.54040 11.03090 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.003297 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.897287 B = 8490.749886 C = 8620.862664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.129 3.871 4 C -0.227 4.227 5 C -0.048 4.048 6 C -0.218 4.218 7 C 0.147 3.853 8 O -0.293 6.293 9 C 0.041 3.959 10 C 0.007 3.993 11 N -0.473 5.473 12 C 0.162 3.838 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.009 3.991 22 C 0.029 3.971 23 F -0.126 7.126 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.003 0.997 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.341 -5.515 7.088 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.083 3.917 4 C -0.246 4.246 5 C -0.066 4.066 6 C -0.237 4.237 7 C 0.099 3.901 8 O -0.205 6.205 9 C -0.015 4.015 10 C -0.121 4.121 11 N -0.197 5.197 12 C 0.036 3.964 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.120 4.120 22 C 0.008 3.992 23 F -0.105 7.105 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.825 -5.285 7.201 23.582 hybrid contribution 0.152 -0.126 -1.151 1.168 sum -21.672 -5.412 6.050 23.142 Atomic orbital electron populations 1.23121 0.77807 1.04214 1.01585 1.86128 1.21756 1.25756 1.88479 1.18619 0.89885 0.85637 0.97586 1.20985 1.00134 0.91348 1.12122 1.20772 0.93685 0.97265 0.94907 1.21208 0.94543 0.97708 1.10266 1.18737 0.84420 0.91940 0.95012 1.86292 1.15192 1.33056 1.85930 1.25114 0.94514 0.81972 0.99919 1.24293 0.94194 0.98905 0.94757 1.68646 1.05037 1.37324 1.08743 1.20241 0.86170 0.96100 0.93879 1.21098 1.04435 1.18895 1.10641 0.91886 1.25003 0.95625 0.95889 0.98040 1.69968 1.08388 1.36133 1.39037 0.86415 0.78099 0.80753 0.82018 1.19636 1.20911 1.21011 1.24169 0.91488 0.96779 0.99595 1.16043 0.85873 0.81196 1.16045 1.91495 1.76278 1.48023 1.94690 0.92367 0.92332 0.87976 0.84581 0.84760 0.83795 0.87668 0.90242 0.89668 0.94617 0.97961 0.92837 0.89170 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.61 10.36 -19.59 -0.20 -3.81 16 3 C 0.13 1.62 6.69 -39.20 -0.26 1.36 16 4 C -0.23 -2.20 9.04 -39.42 -0.36 -2.56 16 5 C -0.05 -0.46 10.04 -39.61 -0.40 -0.86 16 6 C -0.22 -2.60 9.00 -39.41 -0.35 -2.96 16 7 C 0.15 2.18 6.68 -39.20 -0.26 1.92 16 8 O -0.29 -4.95 10.02 -19.60 -0.20 -5.15 16 9 C 0.04 0.65 3.78 -25.80 -0.10 0.56 16 10 C 0.01 0.14 7.32 -2.63 -0.02 0.12 16 11 N -0.47 -10.12 6.25 -239.77 -1.50 -11.62 16 12 C 0.16 4.24 4.58 -4.97 -0.02 4.21 16 13 C -0.51 -14.43 8.84 -34.44 -0.30 -14.74 16 14 H 0.06 1.76 7.80 -52.49 -0.41 1.35 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.01 0.15 7.81 -2.76 -0.02 0.13 16 22 C 0.03 0.44 7.32 -39.18 -0.29 0.16 16 23 F -0.13 -2.18 16.95 2.25 0.04 -2.14 16 24 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 25 H 0.06 0.30 7.66 -51.92 -0.40 -0.09 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.14 0.90 6.29 -52.49 -0.33 0.57 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.14 1.55 5.97 -52.49 -0.31 1.24 16 30 H 0.11 1.42 6.10 -51.93 -0.32 1.10 16 31 H 0.08 1.66 7.79 -51.93 -0.40 1.25 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.04 1.00 8.14 -51.92 -0.42 0.57 16 34 H 0.00 0.07 7.70 -51.93 -0.40 -0.33 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.43 7.79 -51.93 -0.40 1.03 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -32.38 317.80 -7.47 -39.85 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.62 Total: -2.57 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.49 Total: -9.98 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.76 Total: -37.62 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.40 Total: -8.96 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.38 -7.47 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228572395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.347 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds