Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 116.99813 * 2 1 4 4 C 1.38751 * 120.03383 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.06590 * 179.71828 * 4 3 2 6 6 C 1.38227 * 120.14035 * 0.23515 * 5 4 3 7 7 C 1.38705 * 120.06714 * 0.02562 * 6 5 4 8 8 O 1.35956 * 120.03510 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99837 * 6.21247 * 8 7 6 10 10 C 1.53937 * 113.72723 * 255.84442 * 9 8 7 11 11 N 1.48193 * 86.09744 * 221.95808 * 10 9 8 12 12 C 1.46902 * 111.06982 * 137.52388 * 11 10 9 13 13 C 1.50701 * 109.47133 * 70.56571 * 12 11 10 14 14 H 1.07994 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99903 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46881 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47175 * 119.99596 * 17 15 13 20 20 H 1.48499 * 109.47145 * 239.99669 * 17 15 13 21 21 C 1.47957 * 90.80013 * 24.59865 * 11 10 9 22 22 C 1.38758 * 120.03459 * 180.22640 * 3 2 1 23 23 F 1.35100 * 120.06701 * 0.02971 * 22 3 2 24 24 H 1.08998 * 109.47690 * 300.00136 * 1 2 3 25 25 H 1.09008 * 109.47202 * 60.00170 * 1 2 3 26 26 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.96714 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.93414 * 180.25466 * 5 4 3 29 29 H 1.07995 * 119.96943 * 180.02562 * 6 5 4 30 30 H 1.09002 * 112.93925 * 27.40768 * 9 8 7 31 31 H 1.08997 * 113.76545 * 336.23793 * 10 9 8 32 32 H 1.08998 * 113.75821 * 107.60728 * 10 9 8 33 33 H 1.09007 * 109.46924 * 190.56161 * 12 11 10 34 34 H 1.09001 * 109.47225 * 310.55983 * 12 11 10 35 35 H 0.97000 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08991 * 113.75982 * 221.08360 * 21 11 10 37 37 H 1.09006 * 113.75538 * 89.71978 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2911 2.3754 -0.0005 5 6 1.9177 3.6069 0.0053 6 6 3.2978 3.6835 0.0069 7 6 4.0582 2.5234 0.0020 8 8 5.4156 2.5995 0.0040 9 6 5.9923 3.8989 0.1490 10 6 6.5510 4.4785 -1.1631 11 7 7.7018 4.9394 -0.3511 12 6 8.9707 4.7081 -1.0543 13 6 9.0786 5.6560 -2.2208 14 1 8.2843 6.3602 -2.4197 15 6 10.1915 5.6243 -3.0342 16 7 11.1590 4.7671 -2.7917 17 14 10.3256 6.7998 -4.4798 18 1 9.1141 7.6567 -4.5350 19 1 11.5292 7.6536 -4.3135 20 1 10.4400 6.0232 -5.7403 21 6 7.4483 3.8783 0.6483 22 6 3.4318 1.2849 -0.0047 23 9 4.1696 0.1532 -0.0100 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2126 2.3189 -0.0014 28 1 1.3279 4.5117 0.0091 29 1 3.7847 4.6475 0.0119 30 1 5.3507 4.5898 0.6958 31 1 6.8106 3.7210 -1.9025 32 1 5.9506 5.2892 -1.5758 33 1 9.8017 4.8783 -0.3697 34 1 9.0032 3.6806 -1.4167 35 1 11.9421 4.7450 -3.3637 36 1 7.5634 4.2102 1.6801 37 1 7.9709 2.9447 0.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228572395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -72.804430 kcal Electronic energy + Delta-G solvation = -21432.606970 eV Core-core repulsion = 17897.915234 eV Total energy + Delta-G solvation = -3534.691735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.77738 -41.69724 -40.78356 -39.30831 -37.26328 -35.02097 -31.73105 -31.08896 -30.44812 -28.29504 -27.42701 -26.85984 -24.40021 -23.71585 -22.71675 -20.90227 -20.00571 -18.66327 -18.28874 -18.09281 -17.86297 -17.37540 -16.90170 -16.45521 -16.19372 -15.90776 -15.86502 -15.64381 -15.43347 -14.81915 -14.38503 -14.00247 -13.80934 -13.58123 -13.52360 -13.13833 -13.12624 -12.82904 -12.60741 -12.46972 -12.21544 -12.12096 -12.04300 -11.57524 -11.46589 -11.20211 -10.69127 -9.76258 -9.40597 -9.26235 -8.26525 -6.37897 0.10095 0.19593 1.39401 1.39964 1.53799 1.66371 2.36662 2.46995 2.52664 3.06321 3.12295 3.20764 3.32490 3.74713 3.85179 3.85578 3.97729 4.12404 4.30086 4.40325 4.42207 4.46634 4.59700 4.67347 4.73870 4.78420 4.87173 4.91200 4.96008 5.06549 5.13106 5.32968 5.39859 5.45492 5.70271 6.01598 6.19428 6.26893 6.32537 6.76834 7.32263 8.85808 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.003297 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.897287 B = 8490.749886 C = 8620.862664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.126 3.874 4 C -0.212 4.212 5 C -0.033 4.033 6 C -0.221 4.221 7 C 0.120 3.880 8 O -0.319 6.319 9 C 0.069 3.931 10 C 0.002 3.998 11 N -0.480 5.480 12 C 0.177 3.823 13 C -0.529 4.529 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.974 3.026 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.002 3.998 22 C -0.015 4.015 23 F -0.152 7.152 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.175 0.825 28 H 0.177 0.823 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.008 0.992 34 H -0.029 1.029 35 H 0.266 0.734 36 H 0.118 0.882 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.829 -3.544 7.052 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.079 3.921 4 C -0.231 4.231 5 C -0.051 4.051 6 C -0.239 4.239 7 C 0.073 3.927 8 O -0.232 6.232 9 C 0.013 3.987 10 C -0.127 4.127 11 N -0.204 5.204 12 C 0.049 3.951 13 C -0.567 4.567 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.126 4.126 22 C -0.036 4.036 23 F -0.131 7.131 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.192 0.808 28 H 0.195 0.805 29 H 0.175 0.825 30 H 0.159 0.841 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.026 0.974 34 H -0.012 1.012 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.351 -3.322 7.179 26.556 hybrid contribution 1.058 -0.832 -1.093 1.733 sum -24.293 -4.153 6.087 25.386 Atomic orbital electron populations 1.23505 0.75053 1.06014 1.03212 1.86105 1.24638 1.25853 1.88290 1.18804 0.89085 0.87055 0.97146 1.21462 1.01848 0.90179 1.09607 1.21285 0.92856 0.98811 0.92154 1.21450 0.95660 0.96916 1.09895 1.19016 0.83537 0.93047 0.97093 1.86232 1.17125 1.33103 1.86772 1.24806 0.93950 0.82426 0.97480 1.24310 0.93705 0.99023 0.95659 1.68525 1.03485 1.38860 1.09496 1.19886 0.87929 0.93963 0.93274 1.21426 1.04684 1.19166 1.11400 0.91623 1.25999 0.95121 0.97636 1.01118 1.70101 1.09080 1.37871 1.40436 0.85261 0.78569 0.78405 0.77964 1.18339 1.20180 1.20464 1.24254 0.93113 0.95106 1.00155 1.16624 0.87316 0.80740 1.18875 1.91408 1.77129 1.49368 1.95200 0.90487 0.90728 0.86394 0.80759 0.80528 0.82471 0.84053 0.93157 0.87768 0.97374 1.01169 0.92548 0.86370 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.47 10.36 -93.01 -0.96 -8.44 16 3 C 0.13 2.99 6.69 22.52 0.15 3.14 16 4 C -0.21 -3.28 9.04 22.38 0.20 -3.08 16 5 C -0.03 -0.49 10.04 22.25 0.22 -0.26 16 6 C -0.22 -4.65 9.00 22.38 0.20 -4.45 16 7 C 0.12 3.53 6.68 22.52 0.15 3.68 16 8 O -0.32 -11.08 10.02 -93.05 -0.93 -12.01 16 9 C 0.07 2.18 3.78 31.24 0.12 2.30 16 10 C 0.00 0.08 7.32 86.37 0.63 0.71 16 11 N -0.48 -20.93 6.25 -915.69 -5.72 -26.65 16 12 C 0.18 9.68 4.58 85.56 0.39 10.08 16 13 C -0.53 -30.44 8.84 25.60 0.23 -30.22 16 14 H 0.07 3.66 7.80 -2.91 -0.02 3.64 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 17 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.00 0.09 7.81 86.41 0.67 0.76 16 22 C -0.02 -0.47 7.32 22.53 0.16 -0.31 16 23 F -0.15 -5.62 16.95 44.97 0.76 -4.86 16 24 H 0.08 0.48 7.66 -2.39 -0.02 0.46 16 25 H 0.07 0.50 7.66 -2.38 -0.02 0.48 16 26 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.18 1.31 6.29 -2.91 -0.02 1.30 16 28 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.16 2.81 5.97 -2.91 -0.02 2.79 16 30 H 0.14 3.41 6.10 -2.39 -0.01 3.40 16 31 H 0.05 2.22 7.79 -2.39 -0.02 2.20 16 32 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 33 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 34 H -0.03 -1.76 7.70 -2.39 -0.02 -1.78 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.06 2.29 7.79 -2.38 -0.02 2.27 16 Total: -1.00 -74.88 317.80 1.25 -73.63 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.08 Total: 4.76 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.71 Total: -15.95 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -5.44 Total: -83.74 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.90 Total: -20.45 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.76 Total: -4.86 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.88 1.25 -73.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228572395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.827 kcal (2) G-P(sol) polarization free energy of solvation -74.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds