Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35941 * 116.99698 * 2 1 4 4 C 1.38735 * 120.00901 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.07358 * 179.97438 * 4 3 2 6 6 C 1.38334 * 120.07907 * 359.78556 * 5 4 3 7 7 F 1.35099 * 119.99139 * 180.25273 * 6 5 4 8 8 C 1.38917 * 120.01229 * 0.46699 * 6 5 4 9 9 O 1.35959 * 120.02907 * 179.79096 * 8 6 5 10 10 C 1.42904 * 116.99731 * 174.35555 * 9 8 6 11 11 H 1.09007 * 110.77666 * 321.77650 * 10 9 8 12 12 C 1.55153 * 110.71854 * 198.54118 * 10 9 8 13 13 C 1.55133 * 101.48397 * 205.96947 * 12 10 9 14 14 N 1.47422 * 104.72446 * 37.29143 * 13 12 10 15 15 C 1.36933 * 125.64862 * 155.81677 * 14 13 12 16 16 H 1.07997 * 120.00103 * 179.69809 * 15 14 13 17 17 C 1.38818 * 120.00011 * 359.69587 * 15 14 13 18 18 N 1.31620 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99835 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46826 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47145 * 299.99824 * 19 17 15 22 22 H 1.48497 * 109.47421 * 60.00028 * 19 17 15 23 23 C 1.47026 * 108.70466 * 335.55601 * 14 13 12 24 24 C 1.38602 * 119.93416 * 359.51150 * 8 6 5 25 25 H 1.08993 * 109.47335 * 60.00013 * 1 2 3 26 26 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47181 * 299.99344 * 1 2 3 28 28 H 1.08004 * 119.96669 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.96399 * 180.02562 * 5 4 3 30 30 H 1.08994 * 111.00529 * 324.20509 * 12 10 9 31 31 H 1.08998 * 111.00511 * 88.02512 * 12 10 9 32 32 H 1.09005 * 110.49416 * 278.45593 * 13 12 10 33 33 H 1.08999 * 110.34519 * 156.05934 * 13 12 10 34 34 H 0.96995 * 119.99631 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.88182 * 120.70006 * 23 14 13 36 36 H 1.08996 * 109.88469 * 241.86912 * 23 14 13 37 37 H 1.08003 * 120.04294 * 180.23296 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2906 2.3749 -0.0005 5 6 1.9166 3.6071 0.0000 6 6 3.2979 3.6830 0.0055 7 9 3.9079 4.8884 0.0112 8 6 4.0577 2.5201 0.0008 9 8 5.4153 2.5943 0.0020 10 6 6.1322 1.3640 0.1221 11 1 5.6298 0.6899 0.8160 12 6 7.5950 1.6225 0.5701 13 6 8.3187 0.3764 -0.0044 14 7 7.6598 0.1239 -1.2988 15 6 8.2145 -0.5391 -2.3608 16 1 7.6453 -0.6771 -3.2681 17 6 9.5084 -1.0337 -2.2711 18 7 10.2023 -0.8650 -1.1654 19 14 10.2653 -1.9375 -3.7201 20 1 11.6451 -2.3625 -3.3724 21 1 9.4454 -3.1336 -4.0405 22 1 10.3069 -1.0356 -4.8991 23 6 6.3061 0.6964 -1.2584 24 6 3.4305 1.2841 0.0007 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2121 2.3178 -0.0005 29 1 1.3268 4.5117 0.0000 30 1 7.9821 2.5410 0.1291 31 1 7.6715 1.6508 1.6570 32 1 8.1911 -0.4788 0.6593 33 1 9.3776 0.5880 -0.1527 34 1 11.1063 -1.2109 -1.1027 35 1 6.1948 1.4407 -2.0468 36 1 5.5657 -0.0935 -1.3841 37 1 4.0196 0.3788 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228792197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = -59.135055 kcal Electronic energy + Delta-G solvation = -21910.055641 eV Core-core repulsion = 18375.956654 eV Total energy + Delta-G solvation = -3534.098987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60286 -40.48341 -39.19216 -37.08322 -35.87539 -32.34321 -30.84167 -29.70881 -28.96010 -27.49755 -27.26058 -24.65629 -23.07719 -22.15044 -20.30255 -20.23796 -18.76565 -17.38392 -17.15908 -16.82343 -16.59000 -16.05515 -15.52609 -14.99340 -14.80982 -14.73424 -14.38940 -13.97111 -13.58578 -13.32901 -12.92195 -12.54523 -12.43830 -12.36481 -12.11099 -11.80999 -11.51602 -11.13861 -11.02234 -10.93906 -10.79029 -10.46264 -10.27622 -10.10507 -9.85601 -9.62521 -8.69937 -8.67068 -7.97431 -6.90215 -5.69190 -3.11784 1.09382 1.20776 2.99104 3.28706 3.40469 3.44320 3.45968 3.48827 4.31708 4.46865 4.53955 4.78376 4.87216 4.91409 5.05355 5.18764 5.22992 5.27552 5.35549 5.41609 5.50778 5.56919 5.70990 5.93175 6.04180 6.10904 6.20355 6.34987 6.43892 6.47885 6.55822 6.68313 7.15447 7.40909 7.53251 7.57844 7.78979 8.30086 9.17070 9.77248 10.40231 11.35028 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.004260 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.494782 B = 6571.362806 C = 7360.463174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.159 3.841 4 C -0.228 4.228 5 C -0.078 4.078 6 C 0.025 3.975 7 F -0.135 7.135 8 C 0.151 3.849 9 O -0.291 6.291 10 C 0.066 3.934 11 H 0.081 0.919 12 C -0.134 4.134 13 C 0.152 3.848 14 N -0.600 5.600 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.918 3.082 20 H -0.289 1.289 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.117 3.883 24 C -0.218 4.218 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.116 0.884 34 H 0.254 0.746 35 H 0.036 0.964 36 H 0.028 0.972 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 5.677 5.047 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.113 3.887 4 C -0.247 4.247 5 C -0.097 4.097 6 C 0.005 3.995 7 F -0.114 7.114 8 C 0.103 3.897 9 O -0.203 6.203 10 C 0.010 3.990 11 H 0.098 0.902 12 C -0.173 4.173 13 C 0.027 3.973 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.215 1.215 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.009 4.009 24 C -0.237 4.237 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.265 5.578 4.972 19.734 hybrid contribution 0.059 -0.403 -0.723 0.830 sum -18.206 5.174 4.249 19.398 Atomic orbital electron populations 1.23091 0.78227 1.04093 1.01419 1.86124 1.21476 1.26568 1.88284 1.18679 0.91460 0.84320 0.94268 1.20899 1.00187 0.91188 1.12390 1.20682 0.91508 0.98762 0.98729 1.16853 0.89997 0.79051 1.13620 1.91482 1.83397 1.41768 1.94718 1.18759 0.84326 0.92007 0.94620 1.86274 1.13099 1.34567 1.86329 1.23816 0.93167 0.83398 0.98620 0.90157 1.23250 0.91389 1.02530 1.00102 1.22077 1.00007 0.90246 0.84925 1.44364 1.09524 1.65661 1.13214 1.19044 0.96500 1.27569 0.92178 0.90389 1.24793 0.96779 1.01172 0.97718 1.69733 1.11123 1.50779 1.25537 0.86108 0.78273 0.79448 0.81400 1.21479 1.21153 1.21066 1.21747 0.89605 0.95745 0.93809 1.20487 0.92694 0.97759 1.12743 0.92473 0.88131 0.92528 0.84629 0.84036 0.90615 0.91343 0.96434 0.86675 0.93522 0.94592 0.95387 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.77 10.50 -19.56 -0.21 -3.97 16 3 C 0.16 2.06 6.68 -39.25 -0.26 1.80 16 4 C -0.23 -2.44 9.03 -39.41 -0.36 -2.80 16 5 C -0.08 -0.89 10.02 -39.56 -0.40 -1.29 16 6 C 0.02 0.37 7.31 -39.29 -0.29 0.08 16 7 F -0.13 -2.15 17.11 2.25 0.04 -2.12 16 8 C 0.15 2.45 6.63 -39.20 -0.26 2.19 16 9 O -0.29 -5.37 9.74 -19.61 -0.19 -5.56 16 10 C 0.07 1.24 2.76 -24.90 -0.07 1.17 16 11 H 0.08 1.39 6.60 -51.93 -0.34 1.04 16 12 C -0.13 -2.64 6.82 -24.46 -0.17 -2.81 16 13 C 0.15 3.69 5.91 -2.41 -0.01 3.68 16 14 N -0.60 -15.64 3.39 -169.93 -0.58 -16.22 16 15 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.73 10.08 55.49 0.56 -26.17 16 19 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.57 6.51 -3.06 -0.02 2.55 16 24 C -0.22 -3.28 8.71 -39.30 -0.34 -3.62 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.14 1.02 6.29 -52.48 -0.33 0.69 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.12 3.12 5.85 -51.93 -0.30 2.81 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.03 0.60 7.43 -51.93 -0.39 0.21 16 37 H 0.15 2.35 5.31 -52.48 -0.28 2.07 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -31.24 309.26 -6.68 -37.93 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.51 Total: -0.91 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.43 Total: -4.69 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.02 Total: -42.39 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.40 Total: -9.53 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.24 -6.68 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228792197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.207 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds