Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35951 * 117.00125 * 2 1 4 4 C 1.38605 * 120.03374 * 359.97438 * 3 2 1 5 5 C 1.38629 * 119.91713 * 180.02562 * 4 3 2 6 6 O 1.35944 * 120.00492 * 179.97438 * 5 4 3 7 7 C 1.42910 * 116.99708 * 185.17387 * 6 5 4 8 8 H 1.09002 * 110.63746 * 39.26599 * 7 6 5 9 9 C 1.55157 * 110.71639 * 162.60085 * 7 6 5 10 10 C 1.54906 * 101.57978 * 153.86639 * 9 7 6 11 11 N 1.47423 * 104.83437 * 322.99187 * 10 9 7 12 12 C 1.36936 * 125.65100 * 204.09423 * 11 10 9 13 13 H 1.07994 * 120.00243 * 168.02867 * 12 11 10 14 14 C 1.38812 * 119.99837 * 348.02819 * 12 11 10 15 15 N 1.31621 * 119.99924 * 350.85123 * 14 12 11 16 16 Si 1.86797 * 120.00105 * 170.85244 * 14 12 11 17 17 H 1.48502 * 109.47140 * 94.89892 * 16 14 12 18 18 H 1.48496 * 109.47388 * 214.89785 * 16 14 12 19 19 H 1.48498 * 109.47171 * 334.89955 * 16 14 12 20 20 C 1.47026 * 108.70397 * 24.12534 * 11 10 9 21 21 C 1.38731 * 119.98644 * 0.02562 * 5 4 3 22 22 C 1.38214 * 120.06962 * 359.97438 * 21 5 4 23 23 C 1.38328 * 120.08112 * 359.97438 * 22 21 5 24 24 F 1.35101 * 119.99135 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47211 * 299.99961 * 1 2 3 27 27 H 1.09001 * 109.47333 * 60.00215 * 1 2 3 28 28 H 1.08003 * 120.03903 * 0.05003 * 4 3 2 29 29 H 1.09006 * 111.00481 * 271.93746 * 9 7 6 30 30 H 1.08998 * 111.00708 * 35.79066 * 9 7 6 31 31 H 1.09001 * 110.36665 * 204.14603 * 10 9 7 32 32 H 1.09003 * 110.36390 * 81.82897 * 10 9 7 33 33 H 0.97005 * 119.99734 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.88080 * 239.52902 * 20 11 10 35 35 H 1.09003 * 109.87877 * 118.35713 * 20 11 10 36 36 H 1.08001 * 119.97101 * 179.72221 * 21 5 4 37 37 H 1.07997 * 119.96108 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3742 -0.0005 5 6 1.9239 3.6081 -0.0011 6 8 1.1859 4.7498 -0.0021 7 6 1.8989 5.9830 -0.1175 8 1 2.7238 5.8853 -0.8232 9 6 0.9444 7.1316 -0.5382 10 6 1.6722 8.3694 0.0429 11 7 2.2408 7.9068 1.3220 12 6 2.5575 8.7040 2.3894 13 1 2.7860 8.2593 3.3466 14 6 2.5849 10.0839 2.2410 15 7 2.4854 10.6191 1.0426 16 14 2.7631 11.1814 3.7420 17 1 4.1943 11.5269 3.9356 18 1 1.9764 12.4249 3.5423 19 1 2.2603 10.4649 4.9416 20 6 2.4123 6.4479 1.2616 21 6 3.3095 3.6775 -0.0016 22 6 4.0610 2.5176 -0.0011 23 6 3.4334 1.2848 0.0005 24 9 4.1698 0.1521 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2134 2.3191 -0.0001 29 1 0.8671 7.1976 -1.6235 30 1 -0.0392 7.0081 -0.0849 31 1 0.9641 9.1803 0.2136 32 1 2.4661 8.6932 -0.6301 33 1 2.5049 11.5834 0.9389 34 1 1.8316 5.9733 2.0526 35 1 3.4668 6.1938 1.3695 36 1 3.8015 4.6389 -0.0066 37 1 5.1395 2.5737 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228981572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -63.061756 kcal Electronic energy + Delta-G solvation = -21694.599080 eV Core-core repulsion = 18160.329818 eV Total energy + Delta-G solvation = -3534.269261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.69210 -40.49758 -39.23289 -37.17144 -35.86348 -32.40990 -30.64993 -29.85883 -29.13195 -27.51138 -27.30588 -24.62448 -22.82074 -22.47362 -20.40850 -20.30896 -18.75704 -17.40997 -17.14464 -16.83038 -16.61569 -16.27630 -15.18774 -15.07300 -14.91128 -14.57943 -14.48005 -14.28595 -13.79829 -13.41872 -12.92098 -12.56995 -12.39670 -12.21936 -11.97730 -11.86292 -11.75126 -11.20210 -11.09584 -10.94813 -10.83119 -10.57894 -10.23610 -10.06280 -9.94525 -9.79355 -8.79482 -8.67804 -7.94562 -6.90226 -5.83689 -3.17811 1.08985 1.20545 2.90558 3.28796 3.35899 3.41925 3.44282 3.49671 4.24214 4.42914 4.61491 4.80460 4.93926 4.94235 5.05153 5.18682 5.19611 5.24543 5.32189 5.39855 5.41694 5.51309 5.64464 5.85681 6.09264 6.13215 6.18623 6.30687 6.37332 6.40995 6.51298 6.58723 7.07769 7.33470 7.44374 7.53853 7.69270 8.15381 9.09588 9.70879 10.36741 11.29812 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.003544 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.081823 B = 7898.789672 C = 8202.316716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.132 3.868 4 C -0.224 4.224 5 C 0.174 3.826 6 O -0.300 6.300 7 C 0.069 3.931 8 H 0.081 0.919 9 C -0.136 4.136 10 C 0.174 3.826 11 N -0.599 5.599 12 C -0.233 4.233 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.918 5.918 16 Si 0.913 3.087 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.116 3.884 21 C -0.215 4.215 22 C -0.072 4.072 23 C 0.020 3.980 24 F -0.138 7.138 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.144 0.856 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.146 0.854 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -17.038 -4.915 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.086 3.914 4 C -0.244 4.244 5 C 0.126 3.874 6 O -0.212 6.212 7 C 0.013 3.987 8 H 0.099 0.901 9 C -0.174 4.174 10 C 0.049 3.951 11 N -0.327 5.327 12 C -0.361 4.361 13 H 0.095 0.905 14 C -0.201 4.201 15 N -0.564 5.564 16 Si 0.743 3.257 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.205 1.205 20 C -0.010 4.010 21 C -0.234 4.234 22 C -0.091 4.091 23 C 0.000 4.000 24 F -0.117 7.117 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.163 0.837 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.888 -17.013 -4.855 17.927 hybrid contribution 0.258 0.635 0.749 1.016 sum -2.630 -16.378 -4.106 17.089 Atomic orbital electron populations 1.23140 0.77824 1.04123 1.01932 1.86134 1.21880 1.25578 1.88534 1.18600 0.90475 0.84894 0.97478 1.20245 1.00767 0.88959 1.14401 1.18746 0.89899 0.86667 0.92047 1.86167 1.35927 1.12674 1.86448 1.23729 0.95630 0.80741 0.98616 0.90144 1.23180 0.99148 0.94769 1.00321 1.21436 0.95538 0.91836 0.86264 1.44348 1.73838 1.00032 1.14456 1.19017 1.41243 0.87579 0.88273 0.90540 1.24855 1.01598 0.96774 0.96884 1.69933 1.55949 1.10512 1.20040 0.86095 0.77616 0.80169 0.81846 1.21492 1.21510 1.20491 1.21781 0.97681 0.87819 0.93709 1.21268 0.92728 0.99719 1.09682 1.20786 1.00881 0.89587 0.97879 1.16773 0.85799 0.82977 1.14432 1.91463 1.76434 1.48932 1.94890 0.88018 0.92167 0.92227 0.83805 0.91184 0.90741 0.90786 0.94838 0.93541 0.94680 0.95347 0.83667 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.77 10.36 -19.59 -0.20 -3.97 16 3 C 0.13 1.75 6.69 -39.19 -0.26 1.49 16 4 C -0.22 -2.92 8.97 -39.30 -0.35 -3.28 16 5 C 0.17 2.54 6.61 -39.25 -0.26 2.28 16 6 O -0.30 -4.89 9.88 -19.56 -0.19 -5.08 16 7 C 0.07 1.19 2.78 -24.90 -0.07 1.12 16 8 H 0.08 1.28 6.64 -51.93 -0.34 0.93 16 9 C -0.14 -2.45 6.81 -24.58 -0.17 -2.62 16 10 C 0.17 4.03 5.39 -2.53 -0.01 4.02 16 11 N -0.60 -15.04 3.39 -170.08 -0.58 -15.62 16 12 C -0.23 -6.41 10.23 -15.06 -0.15 -6.57 16 13 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 14 C 0.00 -0.11 5.40 -17.43 -0.09 -0.21 16 15 N -0.92 -26.24 10.75 55.49 0.60 -25.64 16 16 Si 0.91 21.66 29.56 -169.99 -5.03 16.64 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.12 2.40 6.46 -3.06 -0.02 2.38 16 21 C -0.22 -2.94 8.75 -39.41 -0.34 -3.29 16 22 C -0.07 -0.91 10.01 -39.56 -0.40 -1.31 16 23 C 0.02 0.28 7.31 -39.30 -0.29 -0.01 16 24 F -0.14 -1.98 17.11 2.25 0.04 -1.94 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 28 H 0.14 1.60 6.30 -52.48 -0.33 1.27 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.90 7.06 -51.93 -0.37 1.53 16 32 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.03 0.58 7.36 -51.93 -0.38 0.19 16 36 H 0.15 1.97 5.25 -52.49 -0.28 1.69 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 310.25 15.07 4.68 4.68 Total: -1.00 -30.54 310.25 -6.69 -37.22 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.57 Total: -1.47 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.43 Total: -4.80 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.02 Total: -41.26 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.40 Total: -9.06 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.54 -6.69 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228981572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.839 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds