Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35951 * 117.00125 * 2 1 4 4 C 1.38605 * 120.03374 * 359.97438 * 3 2 1 5 5 C 1.38629 * 119.91713 * 180.02562 * 4 3 2 6 6 O 1.35944 * 120.00492 * 179.97438 * 5 4 3 7 7 C 1.42910 * 116.99708 * 185.17387 * 6 5 4 8 8 H 1.09002 * 110.63746 * 39.26599 * 7 6 5 9 9 C 1.55157 * 110.71639 * 162.60085 * 7 6 5 10 10 C 1.54906 * 101.57978 * 153.86639 * 9 7 6 11 11 N 1.47423 * 104.83437 * 322.99187 * 10 9 7 12 12 C 1.36936 * 125.65100 * 204.09423 * 11 10 9 13 13 H 1.07994 * 120.00243 * 168.02867 * 12 11 10 14 14 C 1.38812 * 119.99837 * 348.02819 * 12 11 10 15 15 N 1.31621 * 119.99924 * 350.85123 * 14 12 11 16 16 Si 1.86797 * 120.00105 * 170.85244 * 14 12 11 17 17 H 1.48502 * 109.47140 * 94.89892 * 16 14 12 18 18 H 1.48496 * 109.47388 * 214.89785 * 16 14 12 19 19 H 1.48498 * 109.47171 * 334.89955 * 16 14 12 20 20 C 1.47026 * 108.70397 * 24.12534 * 11 10 9 21 21 C 1.38731 * 119.98644 * 0.02562 * 5 4 3 22 22 C 1.38214 * 120.06962 * 359.97438 * 21 5 4 23 23 C 1.38328 * 120.08112 * 359.97438 * 22 21 5 24 24 F 1.35101 * 119.99135 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47211 * 299.99961 * 1 2 3 27 27 H 1.09001 * 109.47333 * 60.00215 * 1 2 3 28 28 H 1.08003 * 120.03903 * 0.05003 * 4 3 2 29 29 H 1.09006 * 111.00481 * 271.93746 * 9 7 6 30 30 H 1.08998 * 111.00708 * 35.79066 * 9 7 6 31 31 H 1.09001 * 110.36665 * 204.14603 * 10 9 7 32 32 H 1.09003 * 110.36390 * 81.82897 * 10 9 7 33 33 H 0.97005 * 119.99734 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.88080 * 239.52902 * 20 11 10 35 35 H 1.09003 * 109.87877 * 118.35713 * 20 11 10 36 36 H 1.08001 * 119.97101 * 179.72221 * 21 5 4 37 37 H 1.07997 * 119.96108 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3742 -0.0005 5 6 1.9239 3.6081 -0.0011 6 8 1.1859 4.7498 -0.0021 7 6 1.8989 5.9830 -0.1175 8 1 2.7238 5.8853 -0.8232 9 6 0.9444 7.1316 -0.5382 10 6 1.6722 8.3694 0.0429 11 7 2.2408 7.9068 1.3220 12 6 2.5575 8.7040 2.3894 13 1 2.7860 8.2593 3.3466 14 6 2.5849 10.0839 2.2410 15 7 2.4854 10.6191 1.0426 16 14 2.7631 11.1814 3.7420 17 1 4.1943 11.5269 3.9356 18 1 1.9764 12.4249 3.5423 19 1 2.2603 10.4649 4.9416 20 6 2.4123 6.4479 1.2616 21 6 3.3095 3.6775 -0.0016 22 6 4.0610 2.5176 -0.0011 23 6 3.4334 1.2848 0.0005 24 9 4.1698 0.1521 0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2134 2.3191 -0.0001 29 1 0.8671 7.1976 -1.6235 30 1 -0.0392 7.0081 -0.0849 31 1 0.9641 9.1803 0.2136 32 1 2.4661 8.6932 -0.6301 33 1 2.5049 11.5834 0.9389 34 1 1.8316 5.9733 2.0526 35 1 3.4668 6.1938 1.3695 36 1 3.8015 4.6389 -0.0066 37 1 5.1395 2.5737 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228981572.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -81.275841 kcal Electronic energy + Delta-G solvation = -21695.388901 eV Core-core repulsion = 18160.329818 eV Total energy + Delta-G solvation = -3535.059083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.76364 -41.59543 -40.33806 -38.55462 -37.17788 -34.31878 -31.78122 -31.24733 -30.47207 -29.10409 -28.11915 -26.51376 -23.84519 -23.65673 -22.19861 -21.66429 -19.85515 -19.03248 -18.38121 -18.03183 -17.71532 -17.20729 -16.82608 -16.51552 -16.02861 -16.01576 -15.52890 -15.33783 -15.21610 -14.92534 -14.32822 -13.87069 -13.80397 -13.61992 -13.40673 -13.06424 -12.80215 -12.72180 -12.61997 -12.27915 -12.26640 -12.12550 -12.01475 -11.81301 -11.50053 -11.41838 -10.72331 -9.79211 -9.03468 -8.90078 -7.92141 -5.28195 0.08745 0.14817 1.47103 1.47950 1.57807 1.91950 2.21551 2.45265 2.49395 3.23555 3.28877 3.53326 3.63568 3.72295 3.88152 3.90957 4.04545 4.08327 4.20051 4.38256 4.40099 4.48399 4.58608 4.67211 4.73568 4.85192 4.88231 4.96418 4.98294 5.07568 5.21006 5.40277 5.45287 5.53821 5.66532 6.13164 6.16773 6.34470 7.04256 7.69907 8.35297 9.20023 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.003544 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.081823 B = 7898.789672 C = 8202.316716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.131 3.869 4 C -0.220 4.220 5 C 0.155 3.845 6 O -0.304 6.304 7 C 0.086 3.914 8 H 0.100 0.900 9 C -0.121 4.121 10 C 0.178 3.822 11 N -0.622 5.622 12 C -0.251 4.251 13 H 0.076 0.924 14 C -0.056 4.056 15 N -0.944 5.944 16 Si 0.977 3.023 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.271 1.271 20 C 0.114 3.886 21 C -0.220 4.220 22 C -0.066 4.066 23 C 0.005 3.995 24 F -0.144 7.144 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.162 0.838 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.251 0.749 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.146 0.854 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -18.433 -5.000 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.084 3.916 4 C -0.239 4.239 5 C 0.108 3.892 6 O -0.217 6.217 7 C 0.030 3.970 8 H 0.118 0.882 9 C -0.159 4.159 10 C 0.053 3.947 11 N -0.350 5.350 12 C -0.379 4.379 13 H 0.094 0.906 14 C -0.250 4.250 15 N -0.592 5.592 16 Si 0.805 3.195 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.196 1.196 20 C -0.011 4.011 21 C -0.239 4.239 22 C -0.084 4.084 23 C -0.014 4.014 24 F -0.123 7.123 25 H 0.144 0.856 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.179 0.821 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.163 0.837 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.226 -18.452 -4.940 19.373 hybrid contribution 0.342 0.924 0.786 1.260 sum -2.884 -17.529 -4.154 18.244 Atomic orbital electron populations 1.23476 0.75592 1.06113 1.02766 1.86131 1.24216 1.25083 1.88244 1.18692 0.90525 0.85423 0.96912 1.20375 1.01709 0.88214 1.13596 1.18953 0.90354 0.86466 0.93377 1.86133 1.35900 1.12622 1.87023 1.23431 0.95745 0.81164 0.96682 0.88247 1.22992 0.98489 0.92464 1.01962 1.21235 0.94488 0.93312 0.85627 1.44633 1.74064 1.01831 1.14455 1.19351 1.40931 0.88418 0.89240 0.90588 1.25649 1.01834 0.98003 0.99540 1.70108 1.56929 1.10359 1.21780 0.85094 0.77416 0.78085 0.78889 1.21160 1.21676 1.19570 1.21888 0.98013 0.85418 0.95794 1.21304 0.92536 1.00081 1.09996 1.20982 1.02014 0.88783 0.96666 1.17051 0.86282 0.83157 1.14957 1.91446 1.76599 1.49281 1.94986 0.85613 0.91495 0.91154 0.82050 0.87975 0.90664 0.94101 0.96894 0.93983 0.95427 0.94825 0.83670 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.28 10.36 -93.00 -0.96 -8.25 16 3 C 0.13 3.25 6.69 22.52 0.15 3.41 16 4 C -0.22 -5.27 8.97 22.45 0.20 -5.07 16 5 C 0.15 4.23 6.61 22.48 0.15 4.38 16 6 O -0.30 -9.30 9.88 -92.92 -0.92 -10.22 16 7 C 0.09 2.84 2.78 31.78 0.09 2.93 16 8 H 0.10 2.93 6.64 -2.39 -0.02 2.91 16 9 C -0.12 -4.21 6.81 31.99 0.22 -3.99 16 10 C 0.18 8.37 5.39 86.85 0.47 8.84 16 11 N -0.62 -31.55 3.39 -692.00 -2.35 -33.90 16 12 C -0.25 -13.96 10.23 84.03 0.86 -13.10 16 13 H 0.08 4.11 7.84 -2.91 -0.02 4.09 16 14 C -0.06 -3.14 5.40 84.86 0.46 -2.68 16 15 N -0.94 -55.14 10.75 21.65 0.23 -54.90 16 16 Si 0.98 44.89 29.56 68.60 2.03 46.92 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.11 4.66 6.46 86.73 0.56 5.22 16 21 C -0.22 -5.64 8.75 22.38 0.20 -5.44 16 22 C -0.07 -1.53 10.01 22.29 0.22 -1.31 16 23 C 0.01 0.14 7.31 22.45 0.16 0.30 16 24 F -0.14 -3.94 17.11 44.97 0.77 -3.17 16 25 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 27 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.16 3.18 6.30 -2.91 -0.02 3.16 16 29 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.04 2.16 7.06 -2.39 -0.02 2.14 16 32 H 0.01 0.66 8.03 -2.39 -0.02 0.64 16 33 H 0.25 14.19 8.31 -92.70 -0.77 13.41 16 34 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.03 1.34 7.36 -2.39 -0.02 1.32 16 36 H 0.15 3.69 5.25 -2.91 -0.02 3.67 16 37 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -65.90 310.25 4.73 -61.16 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.09 Total: 7.57 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.85 Total: -5.21 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.12 Total: -88.80 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.88 Total: -18.47 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.77 Total: -3.17 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.90 4.73 -61.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228981572.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.112 kcal (2) G-P(sol) polarization free energy of solvation -65.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds