Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35975 * 117.00425 * 2 1 4 4 C 1.38706 * 119.99403 * 0.02562 * 3 2 1 5 5 C 1.38169 * 120.04202 * 179.70380 * 4 3 2 6 6 C 1.38620 * 120.01995 * 0.54929 * 5 4 3 7 7 O 1.36039 * 120.00859 * 179.72118 * 6 5 4 8 8 C 1.42903 * 116.99577 * 354.57912 * 7 6 5 9 9 H 1.09005 * 110.88710 * 326.50165 * 8 7 6 10 10 C 1.55161 * 111.00362 * 202.62490 * 8 7 6 11 11 C 1.54326 * 102.94069 * 206.38225 * 10 8 7 12 12 N 1.47024 * 107.26918 * 22.19371 * 11 10 8 13 13 C 1.36938 * 125.64398 * 181.01991 * 12 11 10 14 14 H 1.08006 * 120.00118 * 188.22066 * 13 12 11 15 15 C 1.38813 * 120.00337 * 8.22198 * 13 12 11 16 16 N 1.31621 * 119.99757 * 195.41714 * 15 13 12 17 17 Si 1.86795 * 119.99792 * 15.69275 * 15 13 12 18 18 H 1.48500 * 109.47249 * 173.52870 * 17 15 13 19 19 H 1.48504 * 109.47025 * 293.52351 * 17 15 13 20 20 H 1.48499 * 109.47301 * 53.52412 * 17 15 13 21 21 C 1.47425 * 108.70452 * 1.28584 * 12 11 10 22 22 C 1.38883 * 119.98815 * 359.45334 * 6 5 4 23 23 F 1.35102 * 120.02031 * 180.29395 * 22 6 5 24 24 C 1.38311 * 119.95962 * 0.27376 * 22 6 5 25 25 H 1.09000 * 109.47493 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47384 * 300.00488 * 1 2 3 27 27 H 1.09008 * 109.46970 * 60.00101 * 1 2 3 28 28 H 1.08003 * 119.97566 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.98670 * 180.29904 * 5 4 3 30 30 H 1.08993 * 110.72269 * 88.02257 * 10 8 7 31 31 H 1.09001 * 110.71830 * 324.74823 * 10 8 7 32 32 H 1.08993 * 109.88580 * 262.77444 * 11 10 8 33 33 H 1.09008 * 109.87861 * 141.60557 * 11 10 8 34 34 H 0.96993 * 120.00545 * 5.43265 * 16 15 13 35 35 H 1.09000 * 110.36690 * 94.48718 * 21 12 11 36 36 H 1.09008 * 110.36239 * 216.80355 * 21 12 11 37 37 H 1.07998 * 120.01286 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2908 2.3748 0.0005 5 6 1.9172 3.6063 0.0067 6 6 3.3014 3.6805 0.0009 7 8 3.9178 4.8932 0.0012 8 6 3.0811 6.0461 -0.1125 9 1 2.2134 5.8364 -0.7380 10 6 3.8787 7.2605 -0.6572 11 6 3.1036 8.4670 -0.0869 12 7 2.3555 7.9903 1.0856 13 6 1.5247 8.7503 1.8651 14 1 1.1233 8.3442 2.7819 15 6 1.1985 10.0425 1.4770 16 7 0.6629 10.8748 2.3447 17 14 1.5124 10.5977 -0.2787 18 1 0.9388 11.9527 -0.4794 19 1 2.9753 10.6372 -0.5312 20 1 0.8729 9.6448 -1.2211 21 6 2.6527 6.5605 1.2868 22 6 4.0589 2.5164 0.0003 23 9 5.4080 2.5879 0.0006 24 6 3.4313 1.2839 -0.0002 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.2123 2.3178 0.0005 29 1 1.3281 4.5114 0.0120 30 1 3.8649 7.2736 -1.7469 31 1 4.9026 7.2483 -0.2835 32 1 2.4122 8.8514 -0.8366 33 1 3.8022 9.2487 0.2118 34 1 0.5686 10.6126 3.2738 35 1 3.4650 6.4391 2.0034 36 1 1.7623 6.0324 1.6285 37 1 4.0195 0.3782 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229994262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = -49.303125 kcal Electronic energy + Delta-G solvation = -21880.828214 eV Core-core repulsion = 18347.155572 eV Total energy + Delta-G solvation = -3533.672642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.85463 -40.53149 -39.37913 -37.39535 -36.01566 -32.55201 -31.12478 -30.04158 -29.17223 -28.18278 -27.36404 -24.27504 -23.19992 -22.19543 -21.00569 -20.35703 -18.86497 -17.93937 -17.63431 -17.06699 -16.21498 -16.14589 -15.76134 -15.47125 -15.18550 -14.93731 -14.38940 -14.30284 -13.70639 -13.41577 -13.19057 -12.89603 -12.65053 -12.60142 -12.43271 -12.17091 -11.93818 -11.43478 -11.29303 -11.11131 -11.05875 -10.66064 -10.19525 -10.00350 -9.44267 -9.11549 -9.06313 -8.77599 -7.87965 -7.13777 -6.37829 -3.29556 0.89328 1.17123 2.88078 3.14327 3.36961 3.38594 3.42874 3.66511 4.18462 4.49812 4.56316 4.69779 4.82117 4.85544 4.87706 4.88552 5.01734 5.11155 5.19022 5.22549 5.26724 5.34418 5.43730 5.66755 5.79083 5.81834 5.98654 6.04347 6.08720 6.26980 6.30063 6.37948 6.48853 6.65085 7.04109 7.40269 7.56695 8.25833 8.96484 9.46871 10.12350 11.12746 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.004228 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.099510 B = 6620.150166 C = 7295.486304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.112 3.888 4 C -0.174 4.174 5 C -0.141 4.141 6 C 0.075 3.925 7 O -0.296 6.296 8 C 0.061 3.939 9 H 0.085 0.915 10 C -0.120 4.120 11 C 0.109 3.891 12 N -0.609 5.609 13 C -0.326 4.326 14 H 0.080 0.920 15 C -0.020 4.020 16 N -0.925 5.925 17 Si 1.070 2.930 18 H -0.300 1.300 19 H -0.285 1.285 20 H -0.298 1.298 21 C 0.121 3.879 22 C 0.104 3.896 23 F -0.127 7.127 24 C -0.153 4.153 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.263 0.737 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -20.168 -7.527 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.067 3.933 4 C -0.193 4.193 5 C -0.159 4.159 6 C 0.028 3.972 7 O -0.209 6.209 8 C 0.005 3.995 9 H 0.103 0.897 10 C -0.158 4.158 11 C -0.016 4.016 12 N -0.339 5.339 13 C -0.452 4.452 14 H 0.098 0.902 15 C -0.219 4.219 16 N -0.566 5.566 17 Si 0.904 3.096 18 H -0.228 1.228 19 H -0.213 1.213 20 H -0.227 1.227 21 C -0.006 4.006 22 C 0.084 3.916 23 F -0.105 7.105 24 C -0.172 4.172 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.182 -18.979 -8.480 20.902 hybrid contribution -0.095 -1.153 1.094 1.592 sum 2.087 -20.132 -7.387 21.546 Atomic orbital electron populations 1.23084 0.78114 1.04012 1.01631 1.86052 1.21497 1.26284 1.89123 1.18438 0.91260 0.84473 0.99109 1.21121 1.00518 0.91320 1.06346 1.21132 0.92643 0.99223 1.02948 1.18916 0.91322 0.85605 1.01319 1.86169 1.35717 1.11367 1.87674 1.23982 0.93317 0.82894 0.99357 0.89695 1.22666 1.00124 0.92565 1.00401 1.22055 0.94115 0.95361 0.90028 1.44681 1.52601 1.04688 1.31897 1.20180 1.25257 0.96466 1.03337 0.90229 1.25829 0.98123 0.91802 1.06164 1.70888 1.46205 1.35612 1.03881 0.83837 0.75836 0.74507 0.75436 1.22810 1.21282 1.22665 1.22046 0.98678 0.86504 0.93365 1.16500 0.77038 0.91092 1.06972 1.91513 1.28023 1.96977 1.94029 1.20009 0.92471 0.96699 1.08024 0.88158 0.92416 0.92504 0.84528 0.83501 0.90480 0.89861 0.94754 0.92848 0.92742 0.94382 0.93264 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.25 10.50 -19.66 -0.21 -3.45 16 3 C 0.11 1.29 6.68 -39.24 -0.26 1.03 16 4 C -0.17 -1.95 9.03 -39.43 -0.36 -2.31 16 5 C -0.14 -1.85 8.92 -39.47 -0.35 -2.20 16 6 C 0.08 1.12 6.68 -39.20 -0.26 0.85 16 7 O -0.30 -4.93 9.81 -19.87 -0.19 -5.13 16 8 C 0.06 1.04 2.81 -24.46 -0.07 0.98 16 9 H 0.09 1.34 6.30 -51.93 -0.33 1.01 16 10 C -0.12 -2.04 6.68 -24.89 -0.17 -2.20 16 11 C 0.11 2.34 4.63 -3.06 -0.01 2.32 16 12 N -0.61 -14.85 3.34 -169.93 -0.57 -15.42 16 13 C -0.33 -9.26 10.56 -15.06 -0.16 -9.42 16 14 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 15 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 16 N -0.92 -28.84 13.70 55.49 0.76 -28.08 16 17 Si 1.07 26.31 24.52 -169.99 -4.17 22.14 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.29 -6.40 5.48 56.52 0.31 -6.10 16 20 H -0.30 -6.96 6.77 56.52 0.38 -6.58 16 21 C 0.12 2.44 6.83 -2.41 -0.02 2.43 16 22 C 0.10 1.46 7.31 -39.32 -0.29 1.17 16 23 F -0.13 -1.88 17.11 2.25 0.04 -1.85 16 24 C -0.15 -1.83 9.96 -39.39 -0.39 -2.22 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.06 0.32 7.66 -51.92 -0.40 -0.07 16 28 H 0.14 1.20 6.29 -52.48 -0.33 0.87 16 29 H 0.15 1.93 5.59 -52.49 -0.29 1.63 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.77 3.75 -51.93 -0.19 0.57 16 33 H 0.05 1.19 6.74 -51.92 -0.35 0.84 16 34 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.97 7.73 -51.92 -0.40 0.57 16 37 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -32.28 302.87 -5.71 -37.99 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.49 Total: -1.69 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.44 Total: -9.08 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.19 Total: -43.50 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.40 Total: -8.58 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.17 Total: 22.14 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.28 -5.71 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229994262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.316 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds