Wall clock time and date at job start Tue Mar 31 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35975 * 117.00425 * 2 1 4 4 C 1.38706 * 119.99403 * 0.02562 * 3 2 1 5 5 C 1.38169 * 120.04202 * 179.70380 * 4 3 2 6 6 C 1.38620 * 120.01995 * 0.54929 * 5 4 3 7 7 O 1.36039 * 120.00859 * 179.72118 * 6 5 4 8 8 C 1.42903 * 116.99577 * 354.57912 * 7 6 5 9 9 H 1.09005 * 110.88710 * 326.50165 * 8 7 6 10 10 C 1.55161 * 111.00362 * 202.62490 * 8 7 6 11 11 C 1.54326 * 102.94069 * 206.38225 * 10 8 7 12 12 N 1.47024 * 107.26918 * 22.19371 * 11 10 8 13 13 C 1.36938 * 125.64398 * 181.01991 * 12 11 10 14 14 H 1.08006 * 120.00118 * 188.22066 * 13 12 11 15 15 C 1.38813 * 120.00337 * 8.22198 * 13 12 11 16 16 N 1.31621 * 119.99757 * 195.41714 * 15 13 12 17 17 Si 1.86795 * 119.99792 * 15.69275 * 15 13 12 18 18 H 1.48500 * 109.47249 * 173.52870 * 17 15 13 19 19 H 1.48504 * 109.47025 * 293.52351 * 17 15 13 20 20 H 1.48499 * 109.47301 * 53.52412 * 17 15 13 21 21 C 1.47425 * 108.70452 * 1.28584 * 12 11 10 22 22 C 1.38883 * 119.98815 * 359.45334 * 6 5 4 23 23 F 1.35102 * 120.02031 * 180.29395 * 22 6 5 24 24 C 1.38311 * 119.95962 * 0.27376 * 22 6 5 25 25 H 1.09000 * 109.47493 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47384 * 300.00488 * 1 2 3 27 27 H 1.09008 * 109.46970 * 60.00101 * 1 2 3 28 28 H 1.08003 * 119.97566 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.98670 * 180.29904 * 5 4 3 30 30 H 1.08993 * 110.72269 * 88.02257 * 10 8 7 31 31 H 1.09001 * 110.71830 * 324.74823 * 10 8 7 32 32 H 1.08993 * 109.88580 * 262.77444 * 11 10 8 33 33 H 1.09008 * 109.87861 * 141.60557 * 11 10 8 34 34 H 0.96993 * 120.00545 * 5.43265 * 16 15 13 35 35 H 1.09000 * 110.36690 * 94.48718 * 21 12 11 36 36 H 1.09008 * 110.36239 * 216.80355 * 21 12 11 37 37 H 1.07998 * 120.01286 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2908 2.3748 0.0005 5 6 1.9172 3.6063 0.0067 6 6 3.3014 3.6805 0.0009 7 8 3.9178 4.8932 0.0012 8 6 3.0811 6.0461 -0.1125 9 1 2.2134 5.8364 -0.7380 10 6 3.8787 7.2605 -0.6572 11 6 3.1036 8.4670 -0.0869 12 7 2.3555 7.9903 1.0856 13 6 1.5247 8.7503 1.8651 14 1 1.1233 8.3442 2.7819 15 6 1.1985 10.0425 1.4770 16 7 0.6629 10.8748 2.3447 17 14 1.5124 10.5977 -0.2787 18 1 0.9388 11.9527 -0.4794 19 1 2.9753 10.6372 -0.5312 20 1 0.8729 9.6448 -1.2211 21 6 2.6527 6.5605 1.2868 22 6 4.0589 2.5164 0.0003 23 9 5.4080 2.5879 0.0006 24 6 3.4313 1.2839 -0.0002 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.2123 2.3178 0.0005 29 1 1.3281 4.5114 0.0120 30 1 3.8649 7.2736 -1.7469 31 1 4.9026 7.2483 -0.2835 32 1 2.4122 8.8514 -0.8366 33 1 3.8022 9.2487 0.2118 34 1 0.5686 10.6126 3.2738 35 1 3.4650 6.4391 2.0034 36 1 1.7623 6.0324 1.6285 37 1 4.0195 0.3782 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229994262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:15 Heat of formation + Delta-G solvation = -71.034130 kcal Electronic energy + Delta-G solvation = -21881.770541 eV Core-core repulsion = 18347.155572 eV Total energy + Delta-G solvation = -3534.614969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.93509 -41.55203 -40.46318 -38.77765 -37.16703 -34.60786 -32.06434 -31.68200 -30.40509 -29.62153 -28.03636 -26.04410 -24.39037 -23.19303 -22.67155 -21.85007 -19.88896 -19.64304 -18.94891 -18.15141 -17.46049 -17.09396 -17.02916 -16.51778 -16.43142 -15.91634 -15.76532 -15.55125 -15.31700 -15.16599 -14.61064 -14.15954 -13.76390 -13.68445 -13.57175 -13.21885 -13.14781 -13.06692 -12.97422 -12.41462 -12.14415 -11.94201 -11.64484 -11.44634 -11.32099 -11.09662 -10.73420 -10.07536 -9.18712 -8.88677 -8.68808 -5.52617 -0.06427 0.18483 1.41544 1.50787 1.72269 1.88888 2.19569 2.41998 2.55058 3.06010 3.18686 3.32298 3.43308 3.61718 3.68544 3.83983 3.88561 4.00980 4.17060 4.20689 4.28554 4.42833 4.43362 4.51557 4.61227 4.74948 4.78165 4.81267 4.85408 4.90249 5.04231 5.07896 5.12024 5.37282 5.46791 6.03423 6.16963 6.34634 6.76019 7.35862 8.00532 8.83459 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.004228 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.099510 B = 6620.150166 C = 7295.486304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.119 3.881 4 C -0.168 4.168 5 C -0.144 4.144 6 C 0.048 3.952 7 O -0.307 6.307 8 C 0.078 3.922 9 H 0.102 0.898 10 C -0.110 4.110 11 C 0.099 3.901 12 N -0.629 5.629 13 C -0.318 4.318 14 H 0.046 0.954 15 C -0.076 4.076 16 N -0.961 5.961 17 Si 1.108 2.892 18 H -0.312 1.312 19 H -0.250 1.250 20 H -0.274 1.274 21 C 0.117 3.883 22 C 0.091 3.909 23 F -0.137 7.137 24 C -0.152 4.152 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.164 0.836 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.248 0.752 35 H 0.027 0.973 36 H 0.049 0.951 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -22.248 -9.902 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.073 3.927 4 C -0.187 4.187 5 C -0.162 4.162 6 C 0.002 3.998 7 O -0.220 6.220 8 C 0.021 3.979 9 H 0.120 0.880 10 C -0.148 4.148 11 C -0.025 4.025 12 N -0.359 5.359 13 C -0.446 4.446 14 H 0.064 0.936 15 C -0.269 4.269 16 N -0.605 5.605 17 Si 0.935 3.065 18 H -0.241 1.241 19 H -0.176 1.176 20 H -0.202 1.202 21 C -0.009 4.009 22 C 0.071 3.929 23 F -0.115 7.115 24 C -0.171 4.171 25 H 0.141 0.859 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.164 0.836 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.291 -21.128 -10.859 23.866 hybrid contribution -0.193 -0.730 1.959 2.100 sum 2.098 -21.859 -8.900 23.694 Atomic orbital electron populations 1.23422 0.76034 1.05938 1.02509 1.86062 1.23620 1.25489 1.88676 1.18536 0.91218 0.85136 0.97809 1.21389 1.01896 0.90455 1.04929 1.21180 0.91967 1.00023 1.03049 1.19135 0.92182 0.85062 1.03409 1.86136 1.35807 1.11793 1.88307 1.23683 0.94050 0.83407 0.96772 0.87984 1.22653 0.99574 0.90145 1.02408 1.22214 0.94038 0.97313 0.88953 1.44709 1.52321 1.06361 1.32478 1.20059 1.24960 0.96929 1.02632 0.93568 1.27192 0.98124 0.92250 1.09323 1.71001 1.49171 1.36755 1.03526 0.83431 0.78005 0.73856 0.71247 1.24120 1.17554 1.20167 1.22116 0.98298 0.84696 0.95783 1.16694 0.76710 0.91616 1.07842 1.91483 1.28754 1.97065 1.94242 1.20204 0.93112 0.96562 1.07229 0.85919 0.91725 0.91349 0.81901 0.83589 0.86789 0.89185 0.94283 0.93837 0.94337 0.95517 0.93310 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -5.69 10.50 -93.27 -0.98 -6.67 16 3 C 0.12 2.41 6.68 22.49 0.15 2.56 16 4 C -0.17 -3.31 9.03 22.37 0.20 -3.11 16 5 C -0.14 -3.49 8.92 22.34 0.20 -3.29 16 6 C 0.05 1.36 6.68 22.52 0.15 1.51 16 7 O -0.31 -9.73 9.81 -94.00 -0.92 -10.65 16 8 C 0.08 2.48 2.81 32.06 0.09 2.57 16 9 H 0.10 2.92 6.30 -2.38 -0.02 2.90 16 10 C -0.11 -3.39 6.68 31.79 0.21 -3.18 16 11 C 0.10 4.00 4.63 86.73 0.40 4.40 16 12 N -0.63 -30.40 3.34 -691.53 -2.31 -32.71 16 13 C -0.32 -18.47 10.56 84.03 0.89 -17.59 16 14 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 15 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 16 N -0.96 -61.84 13.70 21.65 0.30 -61.55 16 17 Si 1.11 52.17 24.52 68.60 1.68 53.86 16 18 H -0.31 -15.23 7.11 99.48 0.71 -14.53 16 19 H -0.25 -10.35 5.48 99.48 0.55 -9.80 16 20 H -0.27 -11.80 6.77 99.48 0.67 -11.13 16 21 C 0.12 4.68 6.83 86.93 0.59 5.28 16 22 C 0.09 2.44 7.31 22.44 0.16 2.60 16 23 F -0.14 -3.95 17.11 44.97 0.77 -3.18 16 24 C -0.15 -3.33 9.96 22.39 0.22 -3.11 16 25 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 27 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 28 H 0.16 2.27 6.29 -2.91 -0.02 2.25 16 29 H 0.15 3.54 5.59 -2.91 -0.02 3.53 16 30 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.04 1.59 3.75 -2.39 -0.01 1.58 16 33 H 0.04 1.85 6.74 -2.38 -0.02 1.83 16 34 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.92 7.73 -2.38 -0.02 1.90 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -71.57 302.87 4.25 -67.32 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.86 Total: 7.73 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.85 Total: -14.14 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -2.01 Total: -94.26 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.90 Total: -17.32 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.77 Total: -3.18 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 1.68 Total: 53.86 kcal Total: -71.57 4.25 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229994262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.714 kcal (2) G-P(sol) polarization free energy of solvation -71.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds