Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35974 * 117.00310 * 2 1 4 4 C 1.38706 * 119.99351 * 179.97438 * 3 2 1 5 5 C 1.38165 * 120.03893 * 180.02562 * 4 3 2 6 6 C 1.38631 * 120.02493 * 359.97371 * 5 4 3 7 7 O 1.36039 * 120.00695 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00291 * 5.30727 * 7 6 5 9 9 H 1.09006 * 110.77845 * 38.46581 * 8 7 6 10 10 C 1.55158 * 110.72025 * 161.70557 * 8 7 6 11 11 C 1.54913 * 101.57957 * 153.87039 * 10 8 7 12 12 N 1.47418 * 104.82911 * 322.98721 * 11 10 8 13 13 C 1.36937 * 125.64510 * 204.09461 * 12 11 10 14 14 H 1.08001 * 120.00215 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00054 * 0.04268 * 13 12 11 16 16 N 1.31619 * 120.00331 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00091 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46630 * 90.00091 * 17 15 13 19 19 H 1.48497 * 109.47239 * 210.00114 * 17 15 13 20 20 H 1.48497 * 109.46794 * 330.00592 * 17 15 13 21 21 C 1.47021 * 108.70807 * 24.13455 * 12 11 10 22 22 C 1.38885 * 119.98164 * 0.25701 * 6 5 4 23 23 F 1.35098 * 120.01583 * 179.72071 * 22 6 5 24 24 C 1.38312 * 119.96000 * 359.48987 * 22 6 5 25 25 H 1.08997 * 109.47005 * 300.00753 * 1 2 3 26 26 H 1.09000 * 109.46672 * 60.00486 * 1 2 3 27 27 H 1.08996 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.97987 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.98785 * 179.97438 * 5 4 3 30 30 H 1.09008 * 111.00146 * 271.94261 * 10 8 7 31 31 H 1.08993 * 111.00176 * 35.78828 * 10 8 7 32 32 H 1.08998 * 110.36214 * 204.15206 * 11 10 8 33 33 H 1.08997 * 110.36766 * 81.83045 * 11 10 8 34 34 H 0.96990 * 120.00504 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.88449 * 239.52294 * 21 12 11 36 36 H 1.08996 * 110.01135 * 118.42461 * 21 12 11 37 37 H 1.08003 * 120.00699 * 180.25133 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4315 1.2839 0.0005 5 6 4.0598 2.5144 0.0011 6 6 3.3063 3.6780 0.0005 7 8 3.9253 4.8894 0.0016 8 6 5.3495 4.8903 -0.1145 9 1 5.6812 4.1202 -0.8110 10 6 5.8635 6.2866 -0.5545 11 6 7.2998 6.2863 0.0259 12 7 7.1858 5.5798 1.3147 13 6 8.0349 5.7206 2.3798 14 1 7.8651 5.1553 3.2842 15 6 9.1137 6.5902 2.2971 16 7 9.3203 7.2799 1.1953 17 14 10.2717 6.7828 3.7504 18 1 11.3763 5.7967 3.6371 19 1 10.8338 8.1573 3.7567 20 1 9.5254 6.5473 5.0124 21 6 6.0102 4.6983 1.2669 22 6 1.9193 3.6067 0.0048 23 9 1.1843 4.7402 0.0100 24 6 1.2910 2.3745 -0.0010 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0193 0.3778 0.0005 29 1 5.1385 2.5698 0.0019 30 1 5.8812 6.3719 -1.6411 31 1 5.2632 7.0812 -0.1116 32 1 7.6458 7.3080 0.1826 33 1 7.9781 5.7533 -0.6404 34 1 10.0738 7.8878 1.1377 35 1 5.3086 4.9729 2.0546 36 1 6.3174 3.6598 1.3897 37 1 0.2125 2.3182 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229994266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -59.002030 kcal Electronic energy + Delta-G solvation = -21756.479846 eV Core-core repulsion = 18222.386628 eV Total energy + Delta-G solvation = -3534.093218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.77394 -40.42246 -39.26244 -37.06936 -35.77008 -32.35029 -30.92019 -29.74369 -29.04935 -27.75090 -26.96934 -24.58167 -22.99445 -22.36578 -20.30502 -20.19593 -18.73326 -17.71687 -17.24851 -16.89108 -16.15021 -15.99250 -15.60000 -15.25978 -14.80705 -14.65739 -14.50538 -14.11549 -13.62801 -13.28458 -12.81184 -12.73381 -12.44573 -12.41942 -11.86312 -11.82983 -11.61663 -11.24529 -11.03261 -10.96275 -10.81572 -10.46013 -10.18525 -9.99474 -9.86824 -9.64102 -9.07717 -8.70913 -7.76222 -6.91848 -5.71067 -3.13590 0.97129 1.26143 3.01682 3.32070 3.38450 3.43510 3.45760 3.47743 4.16088 4.45030 4.57444 4.74330 4.87758 4.88263 4.91765 5.16619 5.20825 5.25580 5.31528 5.45325 5.53672 5.66049 5.69666 5.89127 5.97344 6.10333 6.22096 6.32240 6.42874 6.46715 6.55186 6.64908 7.11415 7.39787 7.56080 7.58801 7.77950 8.28349 9.15389 9.75639 10.38494 11.33334 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.003667 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.732996 B = 7633.444214 C = 8085.029366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.109 3.891 4 C -0.117 4.117 5 C -0.141 4.141 6 C 0.078 3.922 7 O -0.297 6.297 8 C 0.068 3.932 9 H 0.078 0.922 10 C -0.134 4.134 11 C 0.152 3.848 12 N -0.601 5.601 13 C -0.225 4.225 14 H 0.079 0.921 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.917 3.083 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.281 1.281 21 C 0.117 3.883 22 C 0.100 3.900 23 F -0.130 7.130 24 C -0.209 4.209 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.017 0.983 34 H 0.254 0.746 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -11.734 -5.097 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.064 3.936 4 C -0.136 4.136 5 C -0.160 4.160 6 C 0.031 3.969 7 O -0.210 6.210 8 C 0.012 3.988 9 H 0.096 0.904 10 C -0.173 4.173 11 C 0.028 3.972 12 N -0.328 5.328 13 C -0.353 4.353 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.747 3.253 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.010 4.010 22 C 0.080 3.920 23 F -0.109 7.109 24 C -0.228 4.228 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.664 -11.556 -5.013 20.101 hybrid contribution 0.327 0.200 0.714 0.811 sum -15.337 -11.356 -4.299 19.561 Atomic orbital electron populations 1.23065 0.78490 1.03944 1.01443 1.86095 1.21272 1.26190 1.89203 1.18531 0.91934 0.83655 0.99458 1.20289 0.91155 0.98337 1.03818 1.21194 1.01108 0.90450 1.03249 1.18984 0.90583 0.86688 1.00683 1.86248 1.22660 1.24659 1.87417 1.23733 0.76066 1.00665 0.98328 0.90419 1.23201 1.00146 0.93844 1.00089 1.22013 0.88588 1.01607 0.85011 1.44372 1.27776 1.47175 1.13471 1.19087 1.03586 1.20381 0.92213 0.90328 1.24802 0.98761 0.99198 0.97758 1.69748 1.31056 1.30568 1.25764 0.86032 0.80676 0.77143 0.81408 1.21541 1.21563 1.20618 1.21754 0.90688 0.94534 0.93984 1.16614 0.86040 0.82298 1.07047 1.91500 1.76539 1.48788 1.94036 1.20927 1.00876 0.90382 1.10655 0.92590 0.92627 0.88196 0.84253 0.83184 0.91377 0.90701 0.86794 0.96458 0.93559 0.94647 0.95525 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.50 -19.66 -0.21 -3.54 16 3 C 0.11 1.30 6.68 -39.25 -0.26 1.04 16 4 C -0.12 -1.42 9.98 -39.44 -0.39 -1.82 16 5 C -0.14 -1.95 8.77 -39.46 -0.35 -2.29 16 6 C 0.08 1.23 6.63 -39.20 -0.26 0.97 16 7 O -0.30 -5.39 9.74 -19.86 -0.19 -5.58 16 8 C 0.07 1.25 2.76 -24.90 -0.07 1.18 16 9 H 0.08 1.27 6.61 -51.93 -0.34 0.93 16 10 C -0.13 -2.61 6.81 -24.58 -0.17 -2.77 16 11 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 12 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 17 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.12 2.49 6.50 -3.07 -0.02 2.47 16 22 C 0.10 1.48 7.31 -39.32 -0.29 1.19 16 23 F -0.13 -2.05 17.11 2.25 0.04 -2.01 16 24 C -0.21 -2.51 9.01 -39.39 -0.35 -2.86 16 25 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.15 2.01 5.29 -52.48 -0.28 1.74 16 30 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.11 3.06 5.87 -51.93 -0.30 2.76 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.03 0.54 7.41 -51.93 -0.38 0.16 16 37 H 0.14 1.34 6.29 -52.48 -0.33 1.01 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -30.88 309.23 -6.69 -37.57 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.51 Total: -1.10 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.43 Total: -4.87 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.02 Total: -42.04 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.40 Total: -9.12 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.88 -6.69 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229994266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.435 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds