Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35974 * 117.00310 * 2 1 4 4 C 1.38706 * 119.99351 * 179.97438 * 3 2 1 5 5 C 1.38165 * 120.03893 * 180.02562 * 4 3 2 6 6 C 1.38631 * 120.02493 * 359.97371 * 5 4 3 7 7 O 1.36039 * 120.00695 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00291 * 5.30727 * 7 6 5 9 9 H 1.09006 * 110.77845 * 38.46581 * 8 7 6 10 10 C 1.55158 * 110.72025 * 161.70557 * 8 7 6 11 11 C 1.54913 * 101.57957 * 153.87039 * 10 8 7 12 12 N 1.47418 * 104.82911 * 322.98721 * 11 10 8 13 13 C 1.36937 * 125.64510 * 204.09461 * 12 11 10 14 14 H 1.08001 * 120.00215 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00054 * 0.04268 * 13 12 11 16 16 N 1.31619 * 120.00331 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00091 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46630 * 90.00091 * 17 15 13 19 19 H 1.48497 * 109.47239 * 210.00114 * 17 15 13 20 20 H 1.48497 * 109.46794 * 330.00592 * 17 15 13 21 21 C 1.47021 * 108.70807 * 24.13455 * 12 11 10 22 22 C 1.38885 * 119.98164 * 0.25701 * 6 5 4 23 23 F 1.35098 * 120.01583 * 179.72071 * 22 6 5 24 24 C 1.38312 * 119.96000 * 359.48987 * 22 6 5 25 25 H 1.08997 * 109.47005 * 300.00753 * 1 2 3 26 26 H 1.09000 * 109.46672 * 60.00486 * 1 2 3 27 27 H 1.08996 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.97987 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.98785 * 179.97438 * 5 4 3 30 30 H 1.09008 * 111.00146 * 271.94261 * 10 8 7 31 31 H 1.08993 * 111.00176 * 35.78828 * 10 8 7 32 32 H 1.08998 * 110.36214 * 204.15206 * 11 10 8 33 33 H 1.08997 * 110.36766 * 81.83045 * 11 10 8 34 34 H 0.96990 * 120.00504 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.88449 * 239.52294 * 21 12 11 36 36 H 1.08996 * 110.01135 * 118.42461 * 21 12 11 37 37 H 1.08003 * 120.00699 * 180.25133 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4315 1.2839 0.0005 5 6 4.0598 2.5144 0.0011 6 6 3.3063 3.6780 0.0005 7 8 3.9253 4.8894 0.0016 8 6 5.3495 4.8903 -0.1145 9 1 5.6812 4.1202 -0.8110 10 6 5.8635 6.2866 -0.5545 11 6 7.2998 6.2863 0.0259 12 7 7.1858 5.5798 1.3147 13 6 8.0349 5.7206 2.3798 14 1 7.8651 5.1553 3.2842 15 6 9.1137 6.5902 2.2971 16 7 9.3203 7.2799 1.1953 17 14 10.2717 6.7828 3.7504 18 1 11.3763 5.7967 3.6371 19 1 10.8338 8.1573 3.7567 20 1 9.5254 6.5473 5.0124 21 6 6.0102 4.6983 1.2669 22 6 1.9193 3.6067 0.0048 23 9 1.1843 4.7402 0.0100 24 6 1.2910 2.3745 -0.0010 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.0193 0.3778 0.0005 29 1 5.1385 2.5698 0.0019 30 1 5.8812 6.3719 -1.6411 31 1 5.2632 7.0812 -0.1116 32 1 7.6458 7.3080 0.1826 33 1 7.9781 5.7533 -0.6404 34 1 10.0738 7.8878 1.1377 35 1 5.3086 4.9729 2.0546 36 1 6.3174 3.6598 1.3897 37 1 0.2125 2.3182 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229994266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -77.682187 kcal Electronic energy + Delta-G solvation = -21757.289878 eV Core-core repulsion = 18222.386628 eV Total energy + Delta-G solvation = -3534.903251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.92154 -41.49453 -40.39793 -38.49311 -37.07100 -34.29917 -31.93203 -31.36184 -30.27769 -29.21768 -27.93375 -26.47723 -24.08029 -23.49186 -22.15226 -21.62969 -19.77740 -19.06628 -18.82572 -18.11212 -17.19642 -17.05653 -16.87795 -16.59078 -16.33998 -15.99202 -15.56582 -15.39676 -15.12602 -14.78266 -14.32671 -13.90056 -13.72671 -13.56134 -13.38386 -13.13343 -12.94110 -12.75737 -12.64441 -12.31498 -12.14349 -12.06051 -12.01821 -11.77744 -11.44723 -11.25733 -10.77905 -10.08251 -8.96434 -8.82919 -7.81086 -5.26661 -0.03077 0.21980 1.47364 1.49233 1.58042 1.99688 2.31445 2.45499 2.49372 3.11588 3.30051 3.55631 3.59583 3.67800 3.86631 3.91145 3.97831 4.01311 4.32934 4.37369 4.42930 4.54446 4.60325 4.67171 4.78583 4.84707 4.90328 4.94339 4.94993 5.04749 5.13965 5.42481 5.43371 5.55125 5.73587 6.20778 6.26500 6.39703 7.06274 7.71348 8.34046 9.21232 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030603 B = 0.003667 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.732996 B = 7633.444214 C = 8085.029366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.116 4.116 5 C -0.141 4.141 6 C 0.046 3.954 7 O -0.314 6.314 8 C 0.085 3.915 9 H 0.102 0.898 10 C -0.123 4.123 11 C 0.156 3.844 12 N -0.623 5.623 13 C -0.245 4.245 14 H 0.080 0.920 15 C -0.063 4.063 16 N -0.947 5.947 17 Si 0.983 3.017 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.116 3.884 22 C 0.084 3.916 23 F -0.142 7.142 24 C -0.200 4.200 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.005 0.995 34 H 0.250 0.750 35 H 0.021 0.979 36 H 0.040 0.960 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 -13.788 -5.177 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.135 4.135 5 C -0.160 4.160 6 C 0.000 4.000 7 O -0.228 6.228 8 C 0.029 3.971 9 H 0.120 0.880 10 C -0.161 4.161 11 C 0.031 3.969 12 N -0.351 5.351 13 C -0.373 4.373 14 H 0.098 0.902 15 C -0.255 4.255 16 N -0.597 5.597 17 Si 0.811 3.189 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.196 1.196 21 C -0.010 4.010 22 C 0.064 3.936 23 F -0.120 7.120 24 C -0.219 4.219 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.179 0.821 29 H 0.169 0.831 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.030 -13.641 -5.095 22.407 hybrid contribution 0.594 0.687 0.742 1.172 sum -16.437 -12.953 -4.354 21.375 Atomic orbital electron populations 1.23422 0.76290 1.05969 1.02399 1.86106 1.23530 1.25227 1.88700 1.18639 0.92036 0.84209 0.97922 1.20544 0.91749 0.98440 1.02729 1.21217 1.01097 0.90463 1.03188 1.19242 0.91167 0.86395 1.03162 1.86191 1.21931 1.26374 1.88261 1.23450 0.76618 1.00327 0.96688 0.88036 1.23012 0.96927 0.94545 1.01650 1.21779 0.91160 0.99324 0.84664 1.44659 1.28598 1.48328 1.13495 1.19439 1.04265 1.20499 0.93108 0.90192 1.25648 1.00396 0.99107 1.00398 1.69990 1.31302 1.30968 1.27399 0.85014 0.78561 0.76722 0.78615 1.21011 1.21792 1.19641 1.21861 0.89195 0.94271 0.95648 1.16904 0.85801 0.82873 1.08035 1.91466 1.76698 1.49583 1.94278 1.21152 1.02259 0.89242 1.09287 0.91737 0.91503 0.85830 0.82136 0.83068 0.88271 0.91619 0.90078 0.97716 0.94026 0.96094 0.94190 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.76 10.50 -93.25 -0.98 -6.74 16 3 C 0.12 2.48 6.68 22.49 0.15 2.63 16 4 C -0.12 -2.53 9.98 22.36 0.22 -2.31 16 5 C -0.14 -3.67 8.77 22.35 0.20 -3.47 16 6 C 0.05 1.42 6.63 22.52 0.15 1.57 16 7 O -0.31 -11.26 9.74 -93.99 -0.92 -12.18 16 8 C 0.09 3.08 2.76 31.78 0.09 3.17 16 9 H 0.10 3.17 6.61 -2.38 -0.02 3.15 16 10 C -0.12 -4.76 6.81 31.99 0.22 -4.54 16 11 C 0.16 7.64 5.89 86.86 0.51 8.15 16 12 N -0.62 -32.63 3.39 -692.01 -2.35 -34.98 16 13 C -0.24 -13.85 10.27 84.03 0.86 -12.99 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 16 N -0.95 -55.93 10.09 21.65 0.22 -55.71 16 17 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C 0.12 4.96 6.50 86.73 0.56 5.52 16 22 C 0.08 2.38 7.31 22.44 0.16 2.54 16 23 F -0.14 -4.40 17.11 44.97 0.77 -3.63 16 24 C -0.20 -4.32 9.01 22.39 0.20 -4.12 16 25 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 26 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.15 3.82 5.29 -2.91 -0.02 3.81 16 30 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 31 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.08 4.54 5.87 -2.39 -0.01 4.52 16 33 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.25 14.27 8.31 -92.72 -0.77 13.50 16 35 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.04 1.60 7.41 -2.39 -0.02 1.58 16 37 H 0.17 2.63 6.29 -2.91 -0.02 2.61 16 Total: -1.00 -67.49 309.23 4.77 -62.72 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.09 Total: 8.65 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 4.91 Total: -5.69 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.13 Total: -90.69 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.89 Total: -18.92 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -67.49 4.77 -62.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229994266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.958 kcal (2) G-P(sol) polarization free energy of solvation -67.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds