Wall clock time and date at job start Tue Mar 31 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36049 * 117.00007 * 2 1 4 4 C 1.38757 * 120.08079 * 269.97672 * 3 2 1 5 5 F 1.35098 * 120.01887 * 0.02562 * 4 3 2 6 6 C 1.38409 * 119.96011 * 180.02562 * 4 3 2 7 7 C 1.38263 * 120.12241 * 359.97438 * 6 4 3 8 8 C 1.38217 * 120.15842 * 359.77189 * 7 6 4 9 9 C 1.38628 * 120.03550 * 0.50519 * 8 7 6 10 10 O 1.35999 * 120.05764 * 179.74726 * 9 8 7 11 11 C 1.42897 * 117.00143 * 5.30695 * 10 9 8 12 12 H 1.09004 * 110.88500 * 38.43598 * 11 10 9 13 13 C 1.55163 * 111.03703 * 162.33473 * 11 10 9 14 14 C 1.54332 * 103.01723 * 153.39600 * 13 11 10 15 15 N 1.47015 * 107.26868 * 338.14287 * 14 13 11 16 16 C 1.36942 * 125.64631 * 178.84872 * 15 14 13 17 17 H 1.08002 * 119.99793 * 179.69038 * 16 15 14 18 18 C 1.38809 * 120.00330 * 359.69362 * 16 15 14 19 19 N 1.31617 * 119.99921 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47154 * 269.99547 * 20 18 16 22 22 H 1.48497 * 109.47365 * 29.99912 * 20 18 16 23 23 H 1.48504 * 109.47236 * 149.99991 * 20 18 16 24 24 C 1.47420 * 108.70370 * 358.58378 * 15 14 13 25 25 H 1.08998 * 109.47460 * 59.99924 * 1 2 3 26 26 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46946 * 299.99923 * 1 2 3 28 28 H 1.08001 * 119.93814 * 180.02562 * 6 4 3 29 29 H 1.07997 * 119.92043 * 180.02562 * 7 6 4 30 30 H 1.07996 * 119.98636 * 180.27255 * 8 7 6 31 31 H 1.08994 * 110.72218 * 271.95880 * 13 11 10 32 32 H 1.09004 * 110.71986 * 35.05513 * 13 11 10 33 33 H 1.09007 * 109.98921 * 218.66518 * 14 13 11 34 34 H 1.09000 * 109.77927 * 97.50141 * 14 13 11 35 35 H 0.96997 * 120.00408 * 180.02562 * 19 18 16 36 36 H 1.09001 * 110.36714 * 143.19829 * 24 15 14 37 37 H 1.09002 * 110.36714 * 265.40598 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3628 1.8317 -1.2007 5 9 2.0571 1.2316 -2.3718 6 6 2.9917 3.0646 -1.1978 7 6 3.3051 3.6809 -0.0004 8 6 2.9877 3.0707 1.1985 9 6 2.3631 1.8332 1.2033 10 8 2.0552 1.2301 2.3827 11 6 2.2972 1.9777 3.5762 12 1 2.0489 3.0293 3.4331 13 6 1.5154 1.3801 4.7759 14 6 2.3686 1.8009 5.9912 15 7 3.7260 2.0749 5.4975 16 6 4.7821 2.4983 6.2596 17 1 5.7452 2.6676 5.8012 18 6 4.6147 2.7097 7.6212 19 7 3.4409 2.5038 8.1798 20 14 6.0555 3.2865 8.6608 21 1 6.7899 2.1077 9.1866 22 1 6.9697 4.1080 7.8275 23 1 5.5523 4.1023 9.7951 24 6 3.7636 1.8124 4.0473 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.2372 3.5467 -2.1325 29 1 3.7954 4.6431 -0.0019 30 1 3.2299 3.5566 2.1321 31 1 0.5153 1.8091 4.8367 32 1 1.4635 0.2939 4.6999 33 1 2.3964 0.9945 6.7241 34 1 1.9496 2.7003 6.4423 35 1 3.3238 2.6519 9.1312 36 1 4.4067 2.5366 3.5472 37 1 4.1139 0.7984 3.8544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230833045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:21 Heat of formation + Delta-G solvation = -59.493356 kcal Electronic energy + Delta-G solvation = -22076.469336 eV Core-core repulsion = 18542.354812 eV Total energy + Delta-G solvation = -3534.114524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.00178 -40.45774 -38.45473 -37.17758 -36.13218 -32.38367 -30.26952 -30.00944 -29.13144 -27.48939 -26.83147 -24.67052 -22.81682 -22.62494 -20.43361 -20.16287 -18.63523 -17.53466 -17.30552 -16.71769 -16.34290 -16.15691 -15.16347 -14.94007 -14.77809 -14.74196 -14.45752 -14.31833 -13.89485 -13.32999 -12.70747 -12.61614 -12.28654 -12.24094 -12.10728 -11.85585 -11.51620 -11.24142 -11.02014 -10.84796 -10.43070 -10.31603 -10.13277 -10.04278 -9.95573 -9.75765 -8.78717 -8.68364 -8.23277 -6.94769 -5.79517 -3.14456 0.89553 1.14713 3.10515 3.25842 3.36540 3.41768 3.43351 3.72098 4.26895 4.44091 4.74401 4.86454 4.93837 5.13937 5.16802 5.22709 5.26157 5.32524 5.45507 5.51512 5.53866 5.62475 5.65811 5.88793 6.03185 6.10044 6.21472 6.27400 6.35244 6.49060 6.50873 6.60071 7.22466 7.45360 7.48599 7.60844 7.73332 8.15200 9.12341 9.71992 10.35940 11.32298 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030598 B = 0.004024 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.864001 B = 6957.149760 C = 7612.732503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.316 6.316 3 C 0.017 3.983 4 C 0.117 3.883 5 F -0.131 7.131 6 C -0.189 4.189 7 C -0.053 4.053 8 C -0.207 4.207 9 C 0.155 3.845 10 O -0.290 6.290 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.134 4.134 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.118 3.882 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.254 0.746 36 H 0.044 0.956 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 0.870 -16.597 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.232 6.232 3 C -0.028 4.028 4 C 0.097 3.903 5 F -0.109 7.109 6 C -0.208 4.208 7 C -0.071 4.071 8 C -0.226 4.226 9 C 0.107 3.893 10 O -0.201 6.201 11 C 0.005 3.995 12 H 0.100 0.900 13 C -0.172 4.172 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.360 4.360 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.216 1.216 24 C -0.009 4.009 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.666 0.523 -16.351 17.313 hybrid contribution 0.595 0.500 0.446 0.896 sum -5.071 1.023 -15.904 16.724 Atomic orbital electron populations 1.23029 0.79261 1.03291 1.00492 1.86160 1.19860 1.23170 1.93994 1.17806 1.05907 0.89963 0.89160 1.17676 1.00392 0.92082 0.80180 1.91487 1.91062 1.83288 1.45099 1.20938 1.05000 0.94844 1.00061 1.20847 0.96198 0.99389 0.90639 1.21524 1.04680 0.95927 1.00485 1.19172 0.93267 0.90788 0.86040 1.86209 1.79188 1.42871 1.11861 1.23980 0.98836 0.95103 0.81607 0.89993 1.23028 0.98857 1.01192 0.94121 1.21217 0.82838 1.00092 0.90464 1.44337 1.08239 1.79122 1.01283 1.19061 0.89204 1.38071 0.89660 0.90253 1.24813 0.97218 1.01553 0.96614 1.69934 1.21467 1.54590 1.10926 0.86082 0.81227 0.78238 0.79985 1.21483 1.20610 1.21591 1.21981 0.92671 0.98904 0.87321 0.93952 0.88728 0.93134 0.84375 0.84374 0.83568 0.91297 0.91018 0.93172 0.92930 0.93582 0.93745 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.13 101.05 1.13 1.52 16 2 O -0.32 -4.88 10.07 -34.44 -0.35 -5.23 16 3 C 0.02 0.26 5.74 -39.09 -0.22 0.04 16 4 C 0.12 1.56 7.31 -39.33 -0.29 1.27 16 5 F -0.13 -1.77 17.11 2.25 0.04 -1.73 16 6 C -0.19 -2.09 10.02 -39.51 -0.40 -2.49 16 7 C -0.05 -0.57 10.04 -39.58 -0.40 -0.97 16 8 C -0.21 -2.78 8.72 -39.44 -0.34 -3.12 16 9 C 0.16 2.40 6.65 -39.13 -0.26 2.14 16 10 O -0.29 -4.99 9.74 -34.28 -0.33 -5.32 16 11 C 0.06 1.09 2.82 -24.58 -0.07 1.02 16 12 H 0.08 1.36 6.61 -51.93 -0.34 1.02 16 13 C -0.13 -2.48 6.69 -24.89 -0.17 -2.64 16 14 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16 15 N -0.60 -15.10 3.39 -170.07 -0.58 -15.67 16 16 C -0.23 -6.34 10.28 -15.06 -0.15 -6.50 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 19 N -0.92 -26.43 10.31 55.49 0.57 -25.86 16 20 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.12 2.44 6.60 -2.53 -0.02 2.43 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.15 1.98 5.30 -52.49 -0.28 1.70 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.31 7.52 -51.92 -0.39 0.92 16 34 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.04 0.87 7.24 -51.93 -0.38 0.50 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -30.46 313.51 -6.95 -37.41 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.70 Total: -1.59 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.30 Total: -3.37 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.00 Total: -41.53 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.68 Total: -10.55 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.46 -6.95 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230833045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.083 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds