Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36046 * 116.99924 * 2 1 4 4 C 1.38755 * 120.08090 * 269.97709 * 3 2 1 5 5 F 1.35099 * 120.01633 * 0.04240 * 4 3 2 6 6 C 1.38412 * 119.96345 * 180.02562 * 4 3 2 7 7 C 1.38258 * 120.12076 * 0.02562 * 6 4 3 8 8 C 1.38221 * 120.16011 * 359.73969 * 7 6 4 9 9 C 1.38624 * 120.03460 * 0.51592 * 8 7 6 10 10 O 1.35998 * 120.06012 * 179.76836 * 9 8 7 11 11 C 1.42901 * 116.99997 * 353.93987 * 10 9 8 12 12 C 1.53515 * 114.17337 * 201.76895 * 11 10 9 13 13 N 1.47477 * 87.93183 * 220.32890 * 12 11 10 14 14 C 1.46903 * 110.99925 * 138.69992 * 13 12 11 15 15 C 1.50692 * 109.47139 * 169.99767 * 14 13 12 16 16 H 1.08004 * 120.00253 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00226 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00052 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47104 * 269.99779 * 19 17 15 21 21 H 1.48495 * 109.47263 * 30.00112 * 19 17 15 22 22 H 1.48501 * 109.46903 * 149.99850 * 19 17 15 23 23 C 1.47480 * 87.83512 * 27.00907 * 13 12 11 24 24 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47229 * 300.00286 * 1 2 3 26 26 H 1.08994 * 109.46999 * 60.00447 * 1 2 3 27 27 H 1.08006 * 119.94138 * 179.97438 * 6 4 3 28 28 H 1.08002 * 119.92760 * 180.02562 * 7 6 4 29 29 H 1.07998 * 119.98412 * 180.25237 * 8 7 6 30 30 H 1.09002 * 113.25354 * 334.71703 * 11 10 9 31 31 H 1.09001 * 113.47739 * 105.56118 * 12 11 10 32 32 H 1.09004 * 113.52663 * 335.10732 * 12 11 10 33 33 H 1.09009 * 109.46840 * 50.00003 * 14 13 12 34 34 H 1.08993 * 109.47101 * 290.00328 * 14 13 12 35 35 H 0.96999 * 119.99808 * 180.02562 * 18 17 15 36 36 H 1.08999 * 113.47614 * 87.75865 * 23 13 12 37 37 H 1.08997 * 113.47484 * 218.21898 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3628 1.8316 -1.2007 5 9 2.0567 1.2317 -2.3718 6 6 2.9917 3.0647 -1.1978 7 6 3.3061 3.6804 -0.0005 8 6 2.9891 3.0701 1.1985 9 6 2.3641 1.8328 1.2033 10 8 2.0562 1.2297 2.3827 11 6 2.5230 1.8622 3.5761 12 6 2.6211 0.9244 4.7875 13 7 2.0893 2.0238 5.6142 14 6 1.1089 1.5241 6.5874 15 6 0.7726 2.6174 7.5683 16 1 1.2400 3.5868 7.4777 17 6 -0.1319 2.3803 8.5816 18 7 -0.4257 3.3347 9.4374 19 14 -0.9399 0.7034 8.7388 20 1 -2.1971 0.6837 7.9488 21 1 -0.0168 -0.3408 8.2263 22 1 -1.2480 0.4343 10.1663 23 6 1.4192 2.5350 4.4039 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 3.2380 3.5463 -2.1326 28 1 3.7964 4.6427 -0.0020 29 1 3.2323 3.5555 2.1320 30 1 3.4064 2.4808 3.4179 31 1 3.6445 0.6470 5.0402 32 1 1.9539 0.0645 4.7272 33 1 1.5297 0.6726 7.1224 34 1 0.2041 1.2137 6.0649 35 1 -1.0617 3.1677 10.1505 36 1 0.4309 2.1054 4.2405 37 1 1.4240 3.6226 4.3315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230833370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = -41.253757 kcal Electronic energy + Delta-G solvation = -21652.135239 eV Core-core repulsion = 18118.811643 eV Total energy + Delta-G solvation = -3533.323595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.13117 -40.81421 -39.45770 -37.69591 -36.75635 -32.86647 -30.55631 -30.23191 -29.54136 -26.97703 -25.89789 -25.56100 -23.15239 -22.80200 -21.14453 -19.72551 -18.91646 -17.65186 -17.26838 -16.85498 -16.47044 -16.37300 -15.47403 -15.30673 -15.09344 -14.90261 -14.71811 -14.50735 -14.13301 -13.49227 -13.31685 -12.81396 -12.54115 -12.42833 -12.30421 -12.13760 -11.99924 -11.74796 -11.35294 -11.10836 -10.74561 -10.22195 -10.19360 -10.11574 -9.85526 -9.44638 -8.94588 -8.65285 -8.42250 -8.23884 -6.11961 -4.10352 0.73355 0.96693 2.86006 3.09997 3.22644 3.31030 3.31842 3.60068 4.10692 4.35171 4.41999 4.57836 4.63748 4.65451 4.75467 4.93024 5.08061 5.15365 5.18216 5.24485 5.37455 5.52886 5.54512 5.72491 5.73049 5.81919 5.90621 6.00771 6.04960 6.07226 6.24980 6.33531 6.60061 7.02429 7.17035 7.41540 7.54389 7.68135 8.53244 8.97375 9.48506 11.01184 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.003680 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.727704 B = 7605.981539 C = 8150.628004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.020 3.980 4 C 0.118 3.882 5 F -0.129 7.129 6 C -0.187 4.187 7 C -0.052 4.052 8 C -0.208 4.208 9 C 0.151 3.849 10 O -0.287 6.287 11 C 0.039 3.961 12 C 0.001 3.999 13 N -0.447 5.447 14 C 0.130 3.870 15 C -0.510 4.510 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.267 1.267 22 H -0.284 1.284 23 C -0.004 4.004 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.031 0.969 34 H -0.001 1.001 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -2.405 -21.423 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C -0.026 4.026 4 C 0.098 3.902 5 F -0.108 7.108 6 C -0.206 4.206 7 C -0.070 4.070 8 C -0.227 4.227 9 C 0.104 3.896 10 O -0.199 6.199 11 C -0.017 4.017 12 C -0.128 4.128 13 N -0.171 5.171 14 C 0.003 3.997 15 C -0.548 4.548 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.192 1.192 22 H -0.209 1.209 23 C -0.133 4.133 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.749 -2.343 -20.813 21.719 hybrid contribution -1.332 -1.161 -0.262 1.786 sum 4.418 -3.504 -21.076 21.817 Atomic orbital electron populations 1.23062 0.78913 1.03464 1.00713 1.86147 1.20082 1.23080 1.94001 1.17864 1.05835 0.89699 0.89165 1.17705 1.00174 0.92043 0.80257 1.91499 1.90997 1.83249 1.45023 1.20976 1.04713 0.94717 1.00183 1.20847 0.96246 0.99342 0.90607 1.21409 1.05276 0.95628 1.00382 1.19169 0.93773 0.90792 0.85905 1.86272 1.71871 1.49892 1.11858 1.24635 0.98912 0.97260 0.80913 1.24093 1.02611 0.95894 0.90164 1.68991 1.25982 1.17412 1.04732 1.20753 0.89345 0.97250 0.92317 1.20919 1.24475 0.99058 1.10357 0.90087 1.24910 0.96270 0.96649 0.95454 1.69886 1.34561 1.32581 1.16627 0.86874 0.80178 0.85148 0.77659 1.20218 1.19199 1.20941 1.24321 0.96702 1.01848 0.90459 0.88609 0.92981 0.93780 0.84230 0.84246 0.83657 0.86932 0.89178 0.90830 0.95097 0.98331 0.92540 0.90665 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.13 101.05 1.13 1.49 16 2 O -0.32 -4.52 10.07 -34.43 -0.35 -4.87 16 3 C 0.02 0.27 5.74 -39.09 -0.22 0.05 16 4 C 0.12 1.41 7.31 -39.33 -0.29 1.13 16 5 F -0.13 -1.60 17.11 2.25 0.04 -1.56 16 6 C -0.19 -1.76 10.02 -39.51 -0.40 -2.15 16 7 C -0.05 -0.46 10.04 -39.58 -0.40 -0.86 16 8 C -0.21 -2.24 9.02 -39.44 -0.36 -2.60 16 9 C 0.15 2.01 6.69 -39.13 -0.26 1.75 16 10 O -0.29 -4.27 9.97 -34.28 -0.34 -4.61 16 11 C 0.04 0.56 4.01 -26.20 -0.11 0.46 16 12 C 0.00 0.02 7.52 -7.55 -0.06 -0.03 16 13 N -0.45 -9.02 6.32 -246.14 -1.55 -10.58 16 14 C 0.13 3.10 3.64 -4.98 -0.02 3.08 16 15 C -0.51 -14.44 9.94 -34.44 -0.34 -14.78 16 16 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 19 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.00 -0.07 7.55 -7.56 -0.06 -0.13 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.15 1.40 5.92 -52.49 -0.31 1.09 16 30 H 0.11 1.39 6.00 -51.93 -0.31 1.08 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 33 H 0.03 0.74 7.14 -51.92 -0.37 0.37 16 34 H 0.00 -0.02 6.73 -51.93 -0.35 -0.37 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 1.35 7.42 -51.93 -0.39 0.96 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -31.84 318.04 -7.47 -39.31 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.69 Total: -1.77 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.47 Total: -10.71 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.78 Total: -37.11 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.69 Total: -9.48 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.84 -7.47 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230833370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.942 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds