Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.46665 * 126.92909 * 111.64048 * 3 2 1 5 5 C 1.34525 * 106.36419 * 179.97438 * 4 3 2 6 6 N 1.36417 * 108.86152 * 359.77345 * 5 4 3 7 7 H 0.97001 * 124.87119 * 180.23071 * 6 5 4 8 8 C 1.34877 * 110.25730 * 0.38087 * 6 5 4 9 9 C 1.50702 * 125.80665 * 179.88412 * 8 6 5 10 10 N 1.46503 * 109.47044 * 212.48516 * 9 8 6 11 11 C 1.36934 * 119.99834 * 263.60978 * 10 9 8 12 12 H 1.08008 * 119.99784 * 167.72728 * 11 10 9 13 13 C 1.38814 * 120.00325 * 347.73110 * 11 10 9 14 14 N 1.31615 * 119.99849 * 311.98140 * 13 11 10 15 15 Si 1.86800 * 120.00095 * 131.97932 * 13 11 10 16 16 H 1.48505 * 109.47212 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46693 * 120.00081 * 15 13 11 18 18 H 1.48494 * 109.47121 * 240.00170 * 15 13 11 19 19 C 1.46503 * 119.99935 * 83.60378 * 10 9 8 20 20 C 1.50700 * 109.46439 * 90.00497 * 19 10 9 21 21 C 1.38234 * 120.00369 * 90.00212 * 20 19 10 22 22 C 1.38233 * 120.00175 * 179.97438 * 21 20 19 23 23 C 1.38240 * 120.00029 * 0.06665 * 22 21 20 24 24 C 1.38232 * 119.99883 * 359.90716 * 23 22 21 25 25 C 1.38234 * 119.99935 * 0.05170 * 24 23 22 26 26 H 1.07993 * 126.81770 * 359.97241 * 4 3 2 27 27 H 1.07998 * 125.57190 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47000 * 92.49010 * 9 8 6 29 29 H 1.08992 * 109.47451 * 332.48563 * 9 8 6 30 30 H 0.96995 * 119.99824 * 185.09020 * 14 13 11 31 31 H 1.08996 * 109.47265 * 330.00564 * 19 10 9 32 32 H 1.08994 * 109.47237 * 210.00205 * 19 10 9 33 33 H 1.07996 * 119.99597 * 359.69751 * 21 20 19 34 34 H 1.07998 * 120.00100 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.99768 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.99792 * 180.02562 * 24 23 22 37 37 H 1.08003 * 119.99994 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4490 0.4334 -1.0898 5 6 4.7086 0.2602 -0.6503 6 7 4.6683 -0.2376 0.6191 7 1 5.4473 -0.4460 1.1581 8 6 3.3897 -0.4014 1.0161 9 6 2.9430 -0.9314 2.3542 10 7 1.6895 -1.6723 2.1923 11 6 0.4923 -1.0535 2.4349 12 1 -0.4306 -1.5246 2.1302 13 6 0.4647 0.1793 3.0724 14 7 1.1635 0.3675 4.1717 15 14 -0.5642 1.5713 2.3699 16 1 -1.2504 1.1065 1.1377 17 1 -1.5769 1.9922 3.3712 18 1 0.3164 2.7213 2.0429 19 6 1.7169 -3.0751 1.7708 20 6 1.7913 -3.9632 2.9859 21 6 0.6298 -4.4079 3.5893 22 6 0.6980 -5.2230 4.7036 23 6 1.9279 -5.5924 5.2155 24 6 3.0894 -5.1483 4.6118 25 6 3.0211 -4.3338 3.4970 26 1 3.1466 0.8152 -2.0536 27 1 5.6053 0.4831 -1.2095 28 1 2.7871 -0.0994 3.0409 29 1 3.7082 -1.5956 2.7559 30 1 1.0871 1.2033 4.6578 31 1 2.5891 -3.2480 1.1403 32 1 0.8113 -3.3033 1.2088 33 1 -0.3310 -4.1147 3.1927 34 1 -0.2094 -5.5700 5.1753 35 1 1.9812 -6.2296 6.0859 36 1 4.0502 -5.4372 5.0115 37 1 3.9286 -3.9864 3.0256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233047876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = 145.316265 kcal Electronic energy + Delta-G solvation = -21676.223651 eV Core-core repulsion = 18614.052315 eV Total energy + Delta-G solvation = -3062.171336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55642 -38.63436 -36.02829 -34.80513 -32.09151 -30.79260 -30.45767 -30.29987 -28.98252 -25.70359 -25.46971 -22.32959 -21.95792 -21.27867 -20.21044 -20.15487 -17.55621 -16.63011 -15.99553 -15.59308 -14.94497 -14.50336 -14.49789 -14.15679 -13.95101 -13.28666 -13.14273 -12.85567 -12.82070 -12.64093 -12.31948 -11.98548 -11.89191 -11.71419 -11.53074 -11.04444 -10.98189 -10.58718 -10.52032 -10.47817 -10.26739 -10.01195 -9.20646 -8.45409 -8.32792 -8.18405 -8.12320 -7.42779 -7.08453 -6.06671 -3.06005 1.96934 2.00435 2.59855 2.92464 3.44127 3.56606 3.65045 3.83970 4.22446 4.36408 4.61493 4.89660 5.08441 5.22404 5.38331 5.43052 5.49466 5.55419 5.64218 5.67738 5.75527 5.99928 6.01822 6.11195 6.18684 6.25938 6.43670 6.54957 6.63819 6.67708 6.72776 7.01448 7.06587 7.14062 7.32687 7.35715 7.53219 7.62581 7.87785 7.94657 8.17413 8.99424 9.06532 9.72167 10.17402 10.98925 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.007483 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.274510 B = 3740.838607 C = 4817.280526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.292 3.708 3 C -0.117 4.117 4 C -0.166 4.166 5 C -0.031 4.031 6 N -0.559 5.559 7 H 0.412 0.588 8 C 0.094 3.906 9 C 0.186 3.814 10 N -0.559 5.559 11 C -0.268 4.268 12 H 0.079 0.921 13 C 0.026 3.974 14 N -0.857 5.857 15 Si 0.825 3.175 16 H -0.216 1.216 17 H -0.303 1.303 18 H -0.292 1.292 19 C 0.179 3.821 20 C -0.078 4.078 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.117 4.117 26 H 0.138 0.862 27 H 0.162 0.838 28 H 0.126 0.874 29 H 0.041 0.959 30 H 0.257 0.743 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -6.181 -3.970 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.021 4.021 3 C -0.127 4.127 4 C -0.193 4.193 5 C -0.158 4.158 6 N -0.155 5.155 7 H 0.247 0.753 8 C -0.028 4.028 9 C 0.057 3.943 10 N -0.276 5.276 11 C -0.394 4.394 12 H 0.097 0.903 13 C -0.175 4.175 14 N -0.496 5.496 15 Si 0.653 3.347 16 H -0.139 1.139 17 H -0.232 1.232 18 H -0.218 1.218 19 C 0.053 3.947 20 C -0.082 4.082 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.136 4.136 26 H 0.156 0.844 27 H 0.179 0.821 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.155 -6.042 -3.874 10.864 hybrid contribution 0.470 0.905 0.329 1.071 sum 8.625 -5.138 -3.545 10.647 Atomic orbital electron populations 1.81097 1.11734 1.09782 1.07976 1.24146 0.91244 0.93223 0.93493 1.15984 0.85590 1.14808 0.96288 1.21819 0.91294 1.07294 0.98869 1.21511 0.98699 1.08686 0.86940 1.41581 1.07434 1.52639 1.13831 0.75274 1.22522 0.82186 0.99318 0.98776 1.19777 0.87324 0.98188 0.88983 1.44091 1.02417 1.04243 1.76809 1.18941 0.85331 0.99913 1.35250 0.90305 1.24543 0.97658 1.00027 0.95323 1.70318 1.43226 1.25088 1.11010 0.87534 0.81133 0.83706 0.82322 1.13939 1.23177 1.21829 1.19969 1.00112 0.83356 0.91241 1.21019 0.92562 0.94444 1.00130 1.20989 0.98394 0.96474 0.95777 1.21046 0.97153 0.99119 0.96832 1.20904 0.92912 1.01857 1.00195 1.20960 0.97614 0.99255 0.96676 1.20900 0.97140 0.98632 0.96967 0.84437 0.82110 0.85755 0.94112 0.93346 0.93291 0.92376 0.86572 0.87111 0.87287 0.87247 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.51 12.87 41.84 0.54 -9.97 16 2 C 0.29 6.68 11.53 -22.47 -0.26 6.42 16 3 C -0.12 -2.31 6.07 -105.12 -0.64 -2.95 16 4 C -0.17 -2.60 11.10 -37.49 -0.42 -3.02 16 5 C -0.03 -0.40 11.89 -16.83 -0.20 -0.60 16 6 N -0.56 -7.64 5.91 -9.07 -0.05 -7.69 16 7 H 0.41 4.20 8.96 -40.82 -0.37 3.83 16 8 C 0.09 1.73 6.98 -81.80 -0.57 1.16 16 9 C 0.19 3.87 5.90 -5.19 -0.03 3.84 16 10 N -0.56 -12.57 1.76 -175.98 -0.31 -12.88 16 11 C -0.27 -6.96 6.24 -15.06 -0.09 -7.05 16 12 H 0.08 2.19 8.03 -52.48 -0.42 1.77 16 13 C 0.03 0.71 4.29 -17.43 -0.07 0.64 16 14 N -0.86 -23.92 11.74 55.49 0.65 -23.26 16 15 Si 0.83 21.73 26.60 -169.99 -4.52 17.21 16 16 H -0.22 -5.70 5.24 56.52 0.30 -5.40 16 17 H -0.30 -8.19 7.11 56.52 0.40 -7.78 16 18 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 19 C 0.18 3.53 5.81 -5.19 -0.03 3.50 16 20 C -0.08 -1.48 5.46 -104.62 -0.57 -2.05 16 21 C -0.10 -1.84 9.70 -39.58 -0.38 -2.22 16 22 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 23 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 24 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 25 C -0.12 -2.00 9.70 -39.58 -0.38 -2.39 16 26 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 27 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 3.04 5.12 -51.93 -0.27 2.78 16 29 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.26 7.01 8.32 -40.82 -0.34 6.68 16 31 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 32 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -31.16 314.08 -8.31 -39.47 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.51 Total: 4.57 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.85 Total: -12.17 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.83 Total: -53.81 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.52 Total: 17.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.16 -8.31 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233047876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.790 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds