Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.46665 * 126.92909 * 111.64048 * 3 2 1 5 5 C 1.34525 * 106.36419 * 179.97438 * 4 3 2 6 6 N 1.36417 * 108.86152 * 359.77345 * 5 4 3 7 7 H 0.97001 * 124.87119 * 180.23071 * 6 5 4 8 8 C 1.34877 * 110.25730 * 0.38087 * 6 5 4 9 9 C 1.50702 * 125.80665 * 179.88412 * 8 6 5 10 10 N 1.46503 * 109.47044 * 212.48516 * 9 8 6 11 11 C 1.36934 * 119.99834 * 263.60978 * 10 9 8 12 12 H 1.08008 * 119.99784 * 167.72728 * 11 10 9 13 13 C 1.38814 * 120.00325 * 347.73110 * 11 10 9 14 14 N 1.31615 * 119.99849 * 311.98140 * 13 11 10 15 15 Si 1.86800 * 120.00095 * 131.97932 * 13 11 10 16 16 H 1.48505 * 109.47212 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46693 * 120.00081 * 15 13 11 18 18 H 1.48494 * 109.47121 * 240.00170 * 15 13 11 19 19 C 1.46503 * 119.99935 * 83.60378 * 10 9 8 20 20 C 1.50700 * 109.46439 * 90.00497 * 19 10 9 21 21 C 1.38234 * 120.00369 * 90.00212 * 20 19 10 22 22 C 1.38233 * 120.00175 * 179.97438 * 21 20 19 23 23 C 1.38240 * 120.00029 * 0.06665 * 22 21 20 24 24 C 1.38232 * 119.99883 * 359.90716 * 23 22 21 25 25 C 1.38234 * 119.99935 * 0.05170 * 24 23 22 26 26 H 1.07993 * 126.81770 * 359.97241 * 4 3 2 27 27 H 1.07998 * 125.57190 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47000 * 92.49010 * 9 8 6 29 29 H 1.08992 * 109.47451 * 332.48563 * 9 8 6 30 30 H 0.96995 * 119.99824 * 185.09020 * 14 13 11 31 31 H 1.08996 * 109.47265 * 330.00564 * 19 10 9 32 32 H 1.08994 * 109.47237 * 210.00205 * 19 10 9 33 33 H 1.07996 * 119.99597 * 359.69751 * 21 20 19 34 34 H 1.07998 * 120.00100 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.99768 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.99792 * 180.02562 * 24 23 22 37 37 H 1.08003 * 119.99994 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4490 0.4334 -1.0898 5 6 4.7086 0.2602 -0.6503 6 7 4.6683 -0.2376 0.6191 7 1 5.4473 -0.4460 1.1581 8 6 3.3897 -0.4014 1.0161 9 6 2.9430 -0.9314 2.3542 10 7 1.6895 -1.6723 2.1923 11 6 0.4923 -1.0535 2.4349 12 1 -0.4306 -1.5246 2.1302 13 6 0.4647 0.1793 3.0724 14 7 1.1635 0.3675 4.1717 15 14 -0.5642 1.5713 2.3699 16 1 -1.2504 1.1065 1.1377 17 1 -1.5769 1.9922 3.3712 18 1 0.3164 2.7213 2.0429 19 6 1.7169 -3.0751 1.7708 20 6 1.7913 -3.9632 2.9859 21 6 0.6298 -4.4079 3.5893 22 6 0.6980 -5.2230 4.7036 23 6 1.9279 -5.5924 5.2155 24 6 3.0894 -5.1483 4.6118 25 6 3.0211 -4.3338 3.4970 26 1 3.1466 0.8152 -2.0536 27 1 5.6053 0.4831 -1.2095 28 1 2.7871 -0.0994 3.0409 29 1 3.7082 -1.5956 2.7559 30 1 1.0871 1.2033 4.6578 31 1 2.5891 -3.2480 1.1403 32 1 0.8113 -3.3033 1.2088 33 1 -0.3310 -4.1147 3.1927 34 1 -0.2094 -5.5700 5.1753 35 1 1.9812 -6.2296 6.0859 36 1 4.0502 -5.4372 5.0115 37 1 3.9286 -3.9864 3.0256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233047876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = 127.799010 kcal Electronic energy + Delta-G solvation = -21676.983257 eV Core-core repulsion = 18614.052315 eV Total energy + Delta-G solvation = -3062.930941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82927 -39.98926 -37.74164 -36.59014 -33.90875 -32.32405 -31.75187 -31.61185 -30.47985 -27.36526 -27.08268 -23.98828 -23.28557 -22.73408 -21.65130 -21.36905 -19.21797 -18.15142 -17.34512 -17.09390 -16.74847 -16.12387 -15.92017 -15.78242 -15.45996 -14.91941 -14.62544 -14.21079 -14.12673 -14.05648 -13.93803 -13.56246 -13.53491 -13.34326 -13.25768 -12.77031 -12.61380 -12.38395 -12.19402 -12.13805 -11.83654 -11.66243 -11.21730 -10.42250 -9.64369 -9.50505 -9.45017 -8.98534 -8.79761 -8.13572 -5.09457 0.64201 0.67817 1.07029 1.29168 1.41153 1.70831 1.80053 2.34390 2.46235 2.63607 2.97748 3.08294 3.19383 3.75232 3.94680 4.09805 4.15371 4.25389 4.31882 4.38636 4.54128 4.58179 4.66784 4.78592 4.83915 4.92466 5.02893 5.18619 5.29865 5.32687 5.37313 5.49007 5.72357 5.73121 5.75410 5.95949 5.99845 6.13785 6.29511 6.32168 6.90983 7.02803 7.32374 7.78590 8.19783 8.91130 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.007483 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.274510 B = 3740.838607 C = 4817.280526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.300 3.700 3 C -0.158 4.158 4 C -0.188 4.188 5 C 0.012 3.988 6 N -0.538 5.538 7 H 0.432 0.568 8 C 0.085 3.915 9 C 0.190 3.810 10 N -0.569 5.569 11 C -0.233 4.233 12 H 0.050 0.950 13 C -0.004 4.004 14 N -0.877 5.877 15 Si 0.848 3.152 16 H -0.222 1.222 17 H -0.317 1.317 18 H -0.304 1.304 19 C 0.185 3.815 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.122 4.122 26 H 0.154 0.846 27 H 0.217 0.783 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.253 0.747 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.761 -7.664 -4.180 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.012 4.012 3 C -0.169 4.169 4 C -0.213 4.213 5 C -0.116 4.116 6 N -0.136 5.136 7 H 0.272 0.728 8 C -0.038 4.038 9 C 0.062 3.938 10 N -0.287 5.287 11 C -0.362 4.362 12 H 0.068 0.932 13 C -0.203 4.203 14 N -0.520 5.520 15 Si 0.678 3.322 16 H -0.146 1.146 17 H -0.247 1.247 18 H -0.232 1.232 19 C 0.060 3.940 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.143 4.143 25 C -0.141 4.141 26 H 0.171 0.829 27 H 0.234 0.766 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.212 -7.556 -4.098 14.934 hybrid contribution -0.661 1.211 0.301 1.412 sum 11.552 -6.345 -3.797 13.716 Atomic orbital electron populations 1.81075 1.13272 1.11903 1.09735 1.24925 0.92314 0.91882 0.92046 1.16436 0.84386 1.17093 0.98984 1.22087 0.91583 1.08730 0.98941 1.22280 0.99422 1.04272 0.85664 1.41524 1.06377 1.51227 1.14431 0.72805 1.21811 0.84150 1.00415 0.97444 1.19587 0.87003 0.97347 0.89858 1.44061 1.01996 1.05863 1.76785 1.18678 0.85925 0.99351 1.32257 0.93171 1.24583 0.98560 1.00758 0.96361 1.70330 1.44763 1.25092 1.11825 0.87170 0.80133 0.83281 0.81573 1.14621 1.24716 1.23151 1.19912 1.00090 0.82133 0.91860 1.20921 0.93678 0.95698 0.99879 1.21052 0.97845 0.98194 0.97324 1.21312 0.98918 0.98616 0.96185 1.21352 0.92223 1.01242 1.00683 1.21402 0.99253 0.97914 0.95739 1.21158 0.96825 0.98610 0.97472 0.82868 0.76607 0.89102 0.91767 0.93780 0.91105 0.94344 0.88559 0.85370 0.83991 0.83737 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -24.73 12.87 19.00 0.24 -24.49 16 2 C 0.30 14.09 11.53 88.33 1.02 15.11 16 3 C -0.16 -6.13 6.07 -20.19 -0.12 -6.25 16 4 C -0.19 -5.31 11.10 23.62 0.26 -5.05 16 5 C 0.01 0.23 11.89 83.13 0.99 1.22 16 6 N -0.54 -12.37 5.91 -182.61 -1.08 -13.45 16 7 H 0.43 6.57 8.96 -92.71 -0.83 5.73 16 8 C 0.09 2.97 6.98 41.74 0.29 3.26 16 9 C 0.19 7.75 5.90 85.63 0.51 8.25 16 10 N -0.57 -25.92 1.76 -710.69 -1.25 -27.17 16 11 C -0.23 -12.63 6.24 84.03 0.52 -12.10 16 12 H 0.05 2.97 8.03 -2.91 -0.02 2.94 16 13 C 0.00 -0.22 4.29 84.86 0.36 0.14 16 14 N -0.88 -50.41 11.74 21.65 0.25 -50.16 16 15 Si 0.85 46.67 26.60 68.60 1.82 48.49 16 16 H -0.22 -12.38 5.24 99.48 0.52 -11.86 16 17 H -0.32 -17.87 7.11 99.48 0.71 -17.16 16 18 H -0.30 -17.06 7.11 99.48 0.71 -16.36 16 19 C 0.19 7.33 5.81 85.63 0.50 7.83 16 20 C -0.10 -3.70 5.46 -19.87 -0.11 -3.80 16 21 C -0.13 -4.78 9.70 22.27 0.22 -4.57 16 22 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 23 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 24 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 25 C -0.12 -3.83 9.70 22.27 0.22 -3.61 16 26 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 27 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.09 4.47 5.12 -2.39 -0.01 4.46 16 29 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 30 H 0.25 14.28 8.32 -92.71 -0.77 13.51 16 31 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 32 H 0.04 1.63 7.97 -2.39 -0.02 1.61 16 33 H 0.10 3.93 8.06 -2.91 -0.02 3.90 16 34 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -72.53 314.08 5.39 -67.14 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.08 Total: 10.06 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.32 Total: -10.43 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -1.83 Total: -115.26 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.82 Total: 48.49 kcal Total: -72.53 5.39 -67.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233047876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.938 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds