Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.38237 * 120.00351 * 299.72362 * 4 2 1 6 6 C 1.38223 * 120.01256 * 179.79360 * 5 4 2 7 7 C 1.50700 * 119.98621 * 180.20786 * 6 5 4 8 8 N 1.46895 * 109.46975 * 270.25088 * 7 6 5 9 9 C 1.46897 * 111.00074 * 293.95378 * 8 7 6 10 10 C 1.46903 * 110.99933 * 170.00273 * 8 7 6 11 11 C 1.50702 * 109.47081 * 189.99964 * 10 8 7 12 12 H 1.08001 * 119.99956 * 359.97438 * 11 10 8 13 13 C 1.37876 * 119.99590 * 179.97438 * 11 10 8 14 14 N 1.31506 * 120.00471 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99527 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46829 * 60.00585 * 15 13 11 17 17 H 1.48502 * 109.46627 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47211 * 300.00208 * 15 13 11 19 19 C 1.38260 * 120.02420 * 0.45938 * 6 5 4 20 20 C 1.38198 * 120.01656 * 359.78915 * 19 6 5 21 21 C 1.38329 * 120.00892 * 120.00007 * 4 2 1 22 22 Cl 1.73598 * 120.01120 * 359.97438 * 21 4 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08000 * 119.99020 * 359.97438 * 5 4 2 31 31 H 1.09000 * 109.47223 * 30.25445 * 7 6 5 32 32 H 1.09001 * 109.47056 * 150.25021 * 7 6 5 33 33 H 1.09003 * 109.47152 * 60.00245 * 9 8 7 34 34 H 1.09000 * 109.47368 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.47622 * 300.00337 * 9 8 7 36 36 H 1.09002 * 109.46737 * 309.99755 * 10 8 7 37 37 H 1.09001 * 109.47168 * 69.99696 * 10 8 7 38 38 H 0.96998 * 120.00498 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.99257 * 179.77163 * 19 6 5 40 40 H 1.07994 * 120.01080 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.7032 -0.2350 2.4861 6 6 2.1603 -0.8890 3.6147 7 6 1.7972 -0.3729 4.9832 8 7 2.8103 0.5941 5.4265 9 6 4.1086 -0.0611 5.6332 10 6 2.3740 1.2935 6.6425 11 6 3.3119 2.4381 6.9275 12 1 4.1487 2.6269 6.2712 13 6 3.1018 3.2443 8.0261 14 7 2.0832 3.0142 8.8254 15 14 4.2648 4.6627 8.3798 16 1 4.2557 5.6077 7.2343 17 1 3.8237 5.3697 9.6089 18 1 5.6398 4.1379 8.5776 19 6 2.9548 -2.0135 3.4886 20 6 3.2889 -2.4868 2.2339 21 6 2.8277 -1.8352 1.1037 22 17 3.2468 -2.4290 -0.4728 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.0863 0.6459 2.5851 31 1 0.8233 0.1148 4.9410 32 1 1.7568 -1.2048 5.6864 33 1 4.4412 -0.5118 4.6981 34 1 4.8404 0.6775 5.9606 35 1 4.0080 -0.8353 6.3940 36 1 1.3645 1.6783 6.4978 37 1 2.3814 0.5997 7.4831 38 1 1.9352 3.5816 9.5981 39 1 3.3148 -2.5219 4.3709 40 1 3.9098 -3.3649 2.1355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238217554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = 2.307221 kcal Electronic energy + Delta-G solvation = -19680.085320 eV Core-core repulsion = 16712.820140 eV Total energy + Delta-G solvation = -2967.265180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81700 -37.00335 -36.23858 -35.19164 -32.67274 -31.07682 -29.79666 -27.20488 -27.15787 -26.60275 -23.99829 -23.45670 -21.50043 -20.37503 -19.61449 -16.87360 -16.36372 -15.99254 -15.07373 -14.86840 -14.47610 -14.21447 -13.83851 -13.77833 -13.64935 -13.55389 -12.74066 -12.70878 -12.23018 -12.18222 -11.94051 -11.79274 -11.46342 -11.33476 -11.20008 -11.18084 -10.94870 -10.89605 -10.69450 -10.60930 -10.48198 -10.31551 -9.87418 -9.26530 -8.73169 -8.48567 -8.38557 -7.28723 -6.04544 -4.06003 1.25424 1.39336 2.15956 3.32720 3.36673 3.39777 3.68908 4.41965 4.56296 4.71650 4.93497 5.12599 5.15357 5.20181 5.29843 5.31755 5.40289 5.46282 5.60670 5.72905 5.76833 5.81596 5.84119 5.98115 6.07526 6.11248 6.15319 6.20301 6.23729 6.30016 6.33313 6.52075 6.72556 6.78695 6.93143 7.24086 7.29940 7.76767 8.04061 8.15603 8.50629 9.01265 9.58272 11.06296 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.003825 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.525943 B = 7318.049344 C = 7725.038438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.069 4.069 5 C -0.083 4.083 6 C -0.051 4.051 7 C 0.087 3.913 8 N -0.533 5.533 9 C 0.034 3.966 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.042 4.042 22 Cl -0.082 7.082 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.010 0.990 36 H 0.030 0.970 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -10.048 -16.619 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.102 4.102 6 C -0.052 4.052 7 C -0.041 4.041 8 N -0.257 5.257 9 C -0.114 4.114 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.069 4.069 22 Cl -0.053 7.053 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.110 -9.664 -16.939 19.533 hybrid contribution 0.605 0.073 0.893 1.081 sum -0.505 -9.591 -16.046 18.700 Atomic orbital electron populations 1.21841 0.94146 1.01881 1.02115 1.20233 0.96150 0.96405 0.95373 1.21847 1.01394 0.94695 1.02167 1.19678 0.97281 0.94285 0.95686 1.20841 0.99925 0.99245 0.90161 1.20082 0.95388 0.93724 0.95977 1.21082 0.97107 0.95005 0.90932 1.62162 1.01364 1.25287 1.36922 1.22292 0.93217 0.97735 0.98194 1.19760 0.96769 0.92777 0.83898 1.21111 1.11831 1.12382 1.09298 0.91892 1.24976 0.95642 0.97865 0.96044 1.69940 1.29030 1.39448 1.15464 0.86561 0.81009 0.82285 0.77570 1.20132 1.21342 1.20278 1.21025 0.98262 0.96772 0.96627 1.20913 1.00743 1.00266 0.91017 1.20717 1.02712 0.97736 0.85692 1.98324 1.92468 1.87683 1.26810 0.92377 0.92143 0.92682 0.89788 0.91895 0.92484 0.92457 0.85027 0.90311 0.94788 0.93328 0.90711 0.97105 0.95161 0.99060 0.92845 0.85528 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.01 37.16 0.33 -1.06 16 2 C -0.06 -0.70 2.99 -91.77 -0.27 -0.97 16 3 C -0.14 -1.56 9.00 37.15 0.33 -1.23 16 4 C -0.07 -0.88 4.78 -104.59 -0.50 -1.38 16 5 C -0.08 -1.18 8.37 -39.59 -0.33 -1.51 16 6 C -0.05 -0.77 4.88 -104.62 -0.51 -1.28 16 7 C 0.09 1.51 5.12 -4.98 -0.03 1.49 16 8 N -0.53 -11.28 4.74 -245.82 -1.17 -12.45 16 9 C 0.03 0.66 8.95 60.06 0.54 1.20 16 10 C 0.19 4.94 4.72 -4.97 -0.02 4.92 16 11 C -0.51 -14.12 8.46 -34.44 -0.29 -14.41 16 12 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.11 -1.46 7.97 -39.59 -0.32 -1.78 16 20 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 21 C -0.04 -0.54 6.31 -39.50 -0.25 -0.79 16 22 Cl -0.08 -0.93 27.01 -51.86 -1.40 -2.33 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.60 7.41 -51.93 -0.38 0.22 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 27 H 0.06 0.73 7.37 -51.93 -0.38 0.34 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.13 1.83 7.10 -52.49 -0.37 1.45 16 31 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 32 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 34 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 37 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 1.57 8.03 -52.49 -0.42 1.15 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -28.99 336.95 -9.83 -38.83 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.26 Total: -2.79 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.80 Total: -17.09 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.43 Total: -38.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.40 Total: -2.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.99 -9.83 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238217554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.136 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds