Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 120.00333 * 2 1 4 4 N 1.34781 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.39938 * 119.99790 * 175.56218 * 4 2 1 6 6 C 1.39037 * 120.00092 * 35.52793 * 5 4 2 7 7 C 1.38241 * 120.22533 * 179.97438 * 6 5 4 8 8 C 1.38012 * 120.21707 * 0.03712 * 7 6 5 9 9 C 1.39620 * 119.99158 * 0.23622 * 8 7 6 10 10 C 1.47996 * 120.10747 * 179.72140 * 9 8 7 11 11 C 1.39936 * 119.87945 * 179.72459 * 10 9 8 12 12 C 1.36258 * 120.11881 * 179.71542 * 11 10 9 13 13 C 1.40928 * 119.87661 * 0.56094 * 12 11 10 14 14 C 1.41030 * 120.11834 * 179.69690 * 13 12 11 15 15 H 1.08003 * 119.99978 * 25.54708 * 14 13 12 16 16 C 1.40005 * 119.99967 * 205.55389 * 14 13 12 17 17 N 1.30799 * 120.00341 * 17.11622 * 16 14 13 18 18 Si 1.86801 * 119.99818 * 197.11458 * 16 14 13 19 19 H 1.48500 * 109.47163 * 90.00353 * 18 16 14 20 20 H 1.48507 * 109.47073 * 209.99642 * 18 16 14 21 21 H 1.48498 * 109.47284 * 329.99680 * 18 16 14 22 22 C 1.40933 * 119.76339 * 359.71153 * 13 12 11 23 23 C 1.36249 * 119.87890 * 0.02562 * 22 13 12 24 24 C 1.38564 * 120.00081 * 215.49665 * 5 4 2 25 25 H 1.08998 * 109.47293 * 239.99850 * 1 2 3 26 26 H 1.08998 * 109.47364 * 0.02562 * 1 2 3 27 27 H 1.09011 * 109.47062 * 120.00111 * 1 2 3 28 28 H 0.96999 * 120.00099 * 355.56727 * 4 2 1 29 29 H 1.08005 * 119.88867 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.89626 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.00234 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.94038 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.05819 * 180.27368 * 12 11 10 34 34 H 0.96998 * 120.00049 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.06024 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.94265 * 180.02562 * 23 22 13 37 37 H 1.08002 * 120.10802 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5770 -1.1691 -0.0933 6 6 4.3163 -0.1635 0.5194 7 6 5.6958 -0.1611 0.4302 8 6 6.3484 -1.1565 -0.2683 9 6 5.6147 -2.1676 -0.8919 10 6 6.3116 -3.2329 -1.6467 11 6 5.5718 -4.2472 -2.2650 12 6 6.2080 -5.2271 -2.9661 13 6 7.6143 -5.2245 -3.0580 14 6 8.2784 -6.2399 -3.7770 15 1 7.7673 -6.7601 -4.5737 16 6 9.6001 -6.5737 -3.4579 17 7 10.1090 -6.2053 -2.3107 18 14 10.6368 -7.5454 -4.6706 19 1 11.3534 -6.6076 -5.5718 20 1 11.6239 -8.3701 -3.9284 21 1 9.7573 -8.4308 -5.4754 22 6 8.3546 -4.2038 -2.4286 23 6 7.7081 -3.2257 -1.7345 24 6 4.2229 -2.1735 -0.7961 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3634 -0.5139 -0.8901 28 1 1.6980 -2.0060 0.0658 29 1 3.8110 0.6185 1.0669 30 1 6.2648 0.6224 0.9085 31 1 7.4262 -1.1510 -0.3362 32 1 4.4944 -4.2505 -2.1905 33 1 5.6358 -6.0070 -3.4465 34 1 11.0248 -6.4362 -2.0898 35 1 9.4325 -4.1973 -2.4956 36 1 8.2744 -2.4427 -1.2522 37 1 3.6504 -2.9556 -1.2726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239528784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -0.283143 kcal Electronic energy + Delta-G solvation = -20116.472006 eV Core-core repulsion = 17015.694255 eV Total energy + Delta-G solvation = -3100.777751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30694 -38.53531 -37.18633 -34.74532 -33.86099 -31.44476 -30.81151 -29.80428 -28.77966 -28.07876 -25.25295 -22.63022 -22.54165 -20.94934 -20.36749 -19.57095 -17.63236 -17.35008 -16.79667 -15.97585 -15.56039 -15.23872 -14.58472 -14.25010 -14.05841 -13.66719 -13.26483 -13.02386 -12.91757 -12.77768 -12.60424 -12.35861 -12.17807 -11.82918 -11.54049 -11.24689 -11.14852 -10.97620 -10.73860 -10.53195 -10.12830 -9.88856 -9.68016 -9.42545 -9.32106 -8.58995 -7.92078 -7.65962 -7.08466 -6.91280 -4.47337 1.59120 1.73045 2.55396 2.78337 2.97595 3.00774 3.04486 3.10617 3.20762 3.78748 4.24440 4.59090 4.68386 4.99682 5.09812 5.32269 5.48827 5.56551 5.61814 5.67592 5.79187 5.94060 5.97708 6.15527 6.24652 6.52520 6.67290 6.72080 6.80339 6.86394 6.93982 7.03165 7.14531 7.32252 7.42332 7.49193 7.50044 7.81696 7.90546 8.04165 8.10517 8.12643 8.46586 8.69155 8.81268 9.96907 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.003175 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.791757 B = 8816.598841 C = 9367.080228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.529 6.529 4 N -0.672 5.672 5 C 0.142 3.858 6 C -0.158 4.158 7 C -0.096 4.096 8 C -0.154 4.154 9 C 0.040 3.960 10 C -0.205 4.205 11 C -0.063 4.063 12 C -0.230 4.230 13 C 0.120 3.880 14 C -0.447 4.447 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.779 5.779 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.172 4.172 23 C -0.073 4.073 24 C -0.169 4.169 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.408 0.592 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.109 5.383 3.955 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.405 6.405 4 N -0.318 5.318 5 C 0.050 3.950 6 C -0.178 4.178 7 C -0.114 4.114 8 C -0.173 4.173 9 C 0.039 3.961 10 C -0.207 4.207 11 C -0.081 4.081 12 C -0.250 4.250 13 C 0.117 3.883 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.147 4.147 17 N -0.402 5.402 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.191 4.191 23 C -0.092 4.092 24 C -0.189 4.189 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.243 0.757 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.520 6.119 4.092 12.840 hybrid contribution 0.264 -0.981 -0.416 1.097 sum -10.256 5.138 3.677 12.046 Atomic orbital electron populations 1.21919 0.91179 1.05693 1.04410 1.20935 0.90693 0.83372 0.75550 1.90727 1.70498 1.31338 1.47959 1.43549 1.05721 1.09533 1.72950 1.17599 0.81633 0.97485 0.98316 1.20974 0.93711 1.00124 1.02984 1.20858 0.93796 0.98031 0.98764 1.21235 0.99934 0.95480 1.00630 1.18765 0.91488 0.93052 0.92802 1.18043 0.92901 0.99258 1.10465 1.20378 0.97021 0.94082 0.96597 1.20686 0.94839 1.01360 1.08103 1.17741 0.91046 0.90802 0.88732 1.19725 0.96578 1.15862 1.15387 0.89979 1.26031 0.98230 0.95379 0.95030 1.69811 1.15714 1.35672 1.19035 0.86233 0.79526 0.79803 0.80800 1.19028 1.20096 1.18416 1.21002 0.99910 0.94896 1.03275 1.20538 0.92867 0.97648 0.98127 1.20884 0.94586 1.00527 1.02890 0.89274 0.88798 0.89172 0.75655 0.85564 0.86588 0.86151 0.89078 0.88750 0.90414 0.86364 0.88854 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.32 36.00 0.37 -0.81 16 2 C 0.51 6.19 7.78 -10.99 -0.09 6.11 16 3 O -0.53 -8.82 14.55 5.55 0.08 -8.74 16 4 N -0.67 -8.15 5.33 -9.89 -0.05 -8.21 16 5 C 0.14 2.29 6.28 -83.74 -0.53 1.77 16 6 C -0.16 -2.66 8.69 -39.28 -0.34 -3.00 16 7 C -0.10 -1.58 10.03 -39.66 -0.40 -1.98 16 8 C -0.15 -2.80 9.43 -39.15 -0.37 -3.17 16 9 C 0.04 0.78 5.88 -104.91 -0.62 0.16 16 10 C -0.21 -4.54 5.90 -104.63 -0.62 -5.16 16 11 C -0.06 -1.37 9.36 -39.66 -0.37 -1.74 16 12 C -0.23 -5.45 9.73 -39.28 -0.38 -5.83 16 13 C 0.12 3.07 5.57 -106.80 -0.59 2.48 16 14 C -0.45 -11.30 9.03 -37.86 -0.34 -11.65 16 15 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 16 C 0.07 1.75 5.14 -17.33 -0.09 1.66 16 17 N -0.78 -19.18 10.97 55.55 0.61 -18.58 16 18 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 C -0.17 -4.32 8.62 -39.28 -0.34 -4.66 16 23 C -0.07 -1.69 9.36 -39.66 -0.37 -2.06 16 24 C -0.17 -2.93 9.34 -38.99 -0.36 -3.29 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.41 3.49 8.82 -40.82 -0.36 3.13 16 29 H 0.13 2.13 6.25 -52.48 -0.33 1.80 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.08 6.17 -52.49 -0.32 1.76 16 32 H 0.09 1.73 6.17 -52.48 -0.32 1.40 16 33 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 34 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 35 H 0.12 3.05 6.19 -52.49 -0.33 2.72 16 36 H 0.09 1.94 6.17 -52.49 -0.32 1.62 16 37 H 0.12 1.91 6.18 -52.49 -0.32 1.59 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -29.70 314.90 -9.05 -38.75 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.97 Total: 10.56 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -5.43 Total: -31.19 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.56 Total: -26.78 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.70 -9.05 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239528784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.467 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds