Wall clock time and date at job start Tue Mar 31 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 120.00333 * 2 1 4 4 N 1.34781 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.39938 * 119.99790 * 175.56218 * 4 2 1 6 6 C 1.39037 * 120.00092 * 35.52793 * 5 4 2 7 7 C 1.38241 * 120.22533 * 179.97438 * 6 5 4 8 8 C 1.38012 * 120.21707 * 0.03712 * 7 6 5 9 9 C 1.39620 * 119.99158 * 0.23622 * 8 7 6 10 10 C 1.47996 * 120.10747 * 179.72140 * 9 8 7 11 11 C 1.39936 * 119.87945 * 179.72459 * 10 9 8 12 12 C 1.36258 * 120.11881 * 179.71542 * 11 10 9 13 13 C 1.40928 * 119.87661 * 0.56094 * 12 11 10 14 14 C 1.41030 * 120.11834 * 179.69690 * 13 12 11 15 15 H 1.08003 * 119.99978 * 25.54708 * 14 13 12 16 16 C 1.40005 * 119.99967 * 205.55389 * 14 13 12 17 17 N 1.30799 * 120.00341 * 17.11622 * 16 14 13 18 18 Si 1.86801 * 119.99818 * 197.11458 * 16 14 13 19 19 H 1.48500 * 109.47163 * 90.00353 * 18 16 14 20 20 H 1.48507 * 109.47073 * 209.99642 * 18 16 14 21 21 H 1.48498 * 109.47284 * 329.99680 * 18 16 14 22 22 C 1.40933 * 119.76339 * 359.71153 * 13 12 11 23 23 C 1.36249 * 119.87890 * 0.02562 * 22 13 12 24 24 C 1.38564 * 120.00081 * 215.49665 * 5 4 2 25 25 H 1.08998 * 109.47293 * 239.99850 * 1 2 3 26 26 H 1.08998 * 109.47364 * 0.02562 * 1 2 3 27 27 H 1.09011 * 109.47062 * 120.00111 * 1 2 3 28 28 H 0.96999 * 120.00099 * 355.56727 * 4 2 1 29 29 H 1.08005 * 119.88867 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.89626 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.00234 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.94038 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.05819 * 180.27368 * 12 11 10 34 34 H 0.96998 * 120.00049 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.06024 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.94265 * 180.02562 * 23 22 13 37 37 H 1.08002 * 120.10802 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5770 -1.1691 -0.0933 6 6 4.3163 -0.1635 0.5194 7 6 5.6958 -0.1611 0.4302 8 6 6.3484 -1.1565 -0.2683 9 6 5.6147 -2.1676 -0.8919 10 6 6.3116 -3.2329 -1.6467 11 6 5.5718 -4.2472 -2.2650 12 6 6.2080 -5.2271 -2.9661 13 6 7.6143 -5.2245 -3.0580 14 6 8.2784 -6.2399 -3.7770 15 1 7.7673 -6.7601 -4.5737 16 6 9.6001 -6.5737 -3.4579 17 7 10.1090 -6.2053 -2.3107 18 14 10.6368 -7.5454 -4.6706 19 1 11.3534 -6.6076 -5.5718 20 1 11.6239 -8.3701 -3.9284 21 1 9.7573 -8.4308 -5.4754 22 6 8.3546 -4.2038 -2.4286 23 6 7.7081 -3.2257 -1.7345 24 6 4.2229 -2.1735 -0.7961 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3634 -0.5139 -0.8901 28 1 1.6980 -2.0060 0.0658 29 1 3.8110 0.6185 1.0669 30 1 6.2648 0.6224 0.9085 31 1 7.4262 -1.1510 -0.3362 32 1 4.4944 -4.2505 -2.1905 33 1 5.6358 -6.0070 -3.4465 34 1 11.0248 -6.4362 -2.0898 35 1 9.4325 -4.1973 -2.4956 36 1 8.2744 -2.4427 -1.2522 37 1 3.6504 -2.9556 -1.2726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239528784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:44 Heat of formation + Delta-G solvation = -16.121761 kcal Electronic energy + Delta-G solvation = -20117.158820 eV Core-core repulsion = 17015.694255 eV Total energy + Delta-G solvation = -3101.464566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44065 -40.01268 -38.74986 -36.06205 -35.45422 -33.00478 -32.00043 -31.31274 -30.37670 -29.24817 -26.96704 -24.09134 -23.96714 -22.34171 -22.00743 -20.91822 -19.36614 -18.62250 -17.89418 -17.43660 -16.99960 -16.45115 -16.04544 -15.71167 -15.53070 -14.90871 -14.67527 -14.57703 -14.38661 -14.06256 -13.87832 -13.53815 -13.37119 -13.19651 -13.03369 -12.82678 -12.60756 -12.56973 -12.29119 -12.05373 -11.58554 -11.38859 -11.14238 -11.10774 -10.82136 -10.14275 -9.49230 -9.21792 -8.79951 -8.62848 -6.34038 0.09845 0.41311 1.13365 1.20289 1.38278 1.51560 1.52929 1.67832 2.16562 2.17891 2.63617 3.08025 3.77620 3.82937 4.00510 4.05494 4.22258 4.41220 4.47361 4.53249 4.54084 4.62956 4.68585 4.72351 4.97008 5.08398 5.09748 5.16846 5.23875 5.35542 5.39577 5.45299 5.60310 5.64714 5.73589 5.95443 6.06432 6.19977 6.28193 6.30356 6.49236 6.62904 6.85329 6.97832 7.16707 8.24387 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.003175 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.791757 B = 8816.598841 C = 9367.080228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.501 3.499 3 O -0.579 6.579 4 N -0.663 5.663 5 C 0.144 3.856 6 C -0.160 4.160 7 C -0.095 4.095 8 C -0.162 4.162 9 C 0.011 3.989 10 C -0.199 4.199 11 C -0.067 4.067 12 C -0.244 4.244 13 C 0.087 3.913 14 C -0.486 4.486 15 H 0.082 0.918 16 C 0.034 3.966 17 N -0.815 5.815 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.256 1.256 22 C -0.194 4.194 23 C -0.083 4.083 24 C -0.164 4.164 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.427 0.573 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.292 0.708 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 5.837 4.406 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.292 3.708 3 O -0.458 6.458 4 N -0.310 5.310 5 C 0.050 3.950 6 C -0.180 4.180 7 C -0.113 4.113 8 C -0.181 4.181 9 C 0.010 3.990 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.263 4.263 13 C 0.085 3.915 14 C -0.515 4.515 15 H 0.100 0.900 16 C -0.183 4.183 17 N -0.439 5.439 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.179 1.179 22 C -0.213 4.213 23 C -0.102 4.102 24 C -0.185 4.185 25 H 0.136 0.864 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.266 0.734 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.791 6.554 4.556 15.078 hybrid contribution 0.731 -0.886 -0.386 1.211 sum -12.061 5.668 4.171 13.964 Atomic orbital electron populations 1.21946 0.86492 1.06619 1.06893 1.21979 0.92774 0.82296 0.73732 1.90709 1.71890 1.33018 1.50162 1.43578 1.04133 1.10889 1.72378 1.17677 0.83704 0.96500 0.97139 1.21208 0.94022 1.00176 1.02586 1.21123 0.94027 0.98063 0.98128 1.21353 1.00221 0.95680 1.00821 1.18781 0.92691 0.93282 0.94247 1.18377 0.92655 0.99611 1.09411 1.20699 0.98717 0.93324 0.95726 1.20908 0.94381 1.02347 1.08696 1.18086 0.92263 0.91433 0.89730 1.19943 0.98104 1.17001 1.16408 0.90029 1.26863 0.98819 0.96123 0.96454 1.69860 1.16387 1.37101 1.20580 0.85147 0.77705 0.78309 0.78268 1.18681 1.19127 1.17935 1.20974 0.99346 0.96066 1.04963 1.20768 0.93858 0.97599 0.97930 1.21004 0.93793 1.01115 1.02540 0.86362 0.88740 0.86806 0.73385 0.85440 0.84046 0.85962 0.85835 0.87793 0.89762 0.87971 0.87299 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.32 71.23 0.74 -0.80 16 2 C 0.50 10.80 7.78 87.65 0.68 11.48 16 3 O -0.58 -18.26 14.55 -3.04 -0.04 -18.31 16 4 N -0.66 -13.95 5.33 -303.60 -1.62 -15.57 16 5 C 0.14 4.28 6.28 38.12 0.24 4.52 16 6 C -0.16 -5.06 8.69 22.46 0.20 -4.87 16 7 C -0.09 -2.97 10.03 22.22 0.22 -2.75 16 8 C -0.16 -5.72 9.43 22.55 0.21 -5.51 16 9 C 0.01 0.41 5.88 -20.05 -0.12 0.29 16 10 C -0.20 -8.78 5.90 -19.87 -0.12 -8.90 16 11 C -0.07 -2.89 9.36 22.22 0.21 -2.68 16 12 C -0.24 -11.74 9.73 22.47 0.22 -11.52 16 13 C 0.09 4.67 5.57 -21.28 -0.12 4.55 16 14 C -0.49 -25.58 9.03 23.38 0.21 -25.37 16 15 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 16 C 0.03 1.66 5.14 85.28 0.44 2.10 16 17 N -0.81 -41.69 10.97 21.84 0.24 -41.46 16 18 Si 0.99 36.94 29.59 68.60 2.03 38.97 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 C -0.19 -10.22 8.62 22.47 0.19 -10.03 16 23 C -0.08 -3.93 9.36 22.22 0.21 -3.73 16 24 C -0.16 -5.33 9.34 22.65 0.21 -5.12 16 25 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 27 H 0.11 0.62 8.14 -2.38 -0.02 0.61 16 28 H 0.43 5.62 8.82 -92.71 -0.82 4.81 16 29 H 0.13 4.07 6.25 -2.91 -0.02 4.05 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.12 4.17 6.17 -2.91 -0.02 4.15 16 32 H 0.12 4.41 6.17 -2.91 -0.02 4.39 16 33 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 35 H 0.10 5.59 6.19 -2.91 -0.02 5.57 16 36 H 0.11 4.63 6.17 -2.91 -0.02 4.61 16 37 H 0.14 3.90 6.18 -2.91 -0.02 3.88 16 Total: -1.00 -67.03 314.90 4.53 -62.50 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.30 Total: 32.19 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.62 Total: -58.33 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.38 Total: -57.03 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.04 Total: -18.31 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -67.03 4.53 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239528784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.380 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds