Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35482 * 117.00087 * 2 1 4 4 C 1.39206 * 120.45026 * 359.97438 * 3 2 1 5 5 C 1.38185 * 118.68102 * 180.02562 * 4 3 2 6 6 C 1.40488 * 119.55005 * 359.97438 * 5 4 3 7 7 C 1.47116 * 119.55355 * 180.02562 * 6 5 4 8 8 C 1.34508 * 120.00051 * 180.02562 * 7 6 5 9 9 C 1.47286 * 120.00349 * 179.97438 * 8 7 6 10 10 C 1.39808 * 120.16388 * 359.71923 * 9 8 7 11 11 C 1.37902 * 119.82889 * 179.76845 * 10 9 8 12 12 C 1.38403 * 120.16609 * 0.51000 * 11 10 9 13 13 C 1.38390 * 120.33501 * 359.74464 * 12 11 10 14 14 C 1.37906 * 120.17398 * 359.97438 * 13 12 11 15 15 N 1.32544 * 120.89295 * 0.02562 * 6 5 4 16 16 C 1.33525 * 121.40944 * 359.97438 * 15 6 5 17 17 C 1.40954 * 119.81693 * 179.97438 * 16 15 6 18 18 H 1.07997 * 120.00160 * 179.97438 * 17 16 15 19 19 C 1.39977 * 119.99599 * 0.02562 * 17 16 15 20 20 N 1.30793 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99648 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47338 * 59.99782 * 21 19 17 23 23 H 1.48501 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47198 * 299.99686 * 21 19 17 25 25 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46881 * 300.00406 * 1 2 3 27 27 H 1.08999 * 109.46682 * 60.00623 * 1 2 3 28 28 H 1.08002 * 120.65394 * 0.27583 * 4 3 2 29 29 H 1.08001 * 120.22145 * 180.02562 * 5 4 3 30 30 H 1.07993 * 120.00410 * 359.97438 * 7 6 5 31 31 H 1.08001 * 119.99806 * 359.97438 * 8 7 6 32 32 H 1.08002 * 120.08176 * 0.02562 * 10 9 8 33 33 H 1.07992 * 119.91463 * 180.27643 * 11 10 9 34 34 H 1.07992 * 119.82660 * 179.76551 * 12 11 10 35 35 H 1.08004 * 119.91675 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.08749 * 180.02562 * 14 13 12 37 37 H 0.97005 * 120.00045 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2071 0.0000 4 6 1.2952 2.3806 -0.0005 5 6 1.9602 3.5918 -0.0011 6 6 3.3650 3.6109 -0.0005 7 6 4.0731 4.9005 -0.0005 8 6 5.4179 4.9293 -0.0005 9 6 6.1269 6.2202 -0.0010 10 6 5.4056 7.4179 -0.0075 11 6 6.0765 8.6227 -0.0031 12 6 7.4603 8.6482 -0.0030 13 6 8.1812 7.4669 -0.0020 14 6 7.5245 6.2542 -0.0005 15 7 4.0609 2.4829 0.0000 16 6 3.4565 1.2923 0.0005 17 6 4.2296 0.1138 0.0005 18 1 3.7438 -0.8508 0.0014 19 6 5.6271 0.1936 0.0005 20 7 6.2155 1.3617 0.0000 21 14 6.6518 -1.3684 0.0013 22 1 6.3380 -2.1668 -1.2109 23 1 8.0939 -1.0142 0.0005 24 1 6.3380 -2.1656 1.2141 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 0.2157 2.3448 0.0035 29 1 1.4039 4.5175 -0.0011 30 1 3.5133 5.8240 -0.0013 31 1 5.9778 4.0057 0.0000 32 1 4.3258 7.3994 -0.0117 33 1 5.5207 9.5486 -0.0036 34 1 7.9801 9.5948 -0.0034 35 1 9.2608 7.4946 -0.0015 36 1 8.0884 5.3331 0.0008 37 1 7.1839 1.4170 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239592975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = 34.328344 kcal Electronic energy + Delta-G solvation = -20414.583066 eV Core-core repulsion = 17315.306181 eV Total energy + Delta-G solvation = -3099.276885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.99948 -38.73561 -36.81019 -34.08300 -33.26522 -30.73436 -30.45186 -30.28341 -28.00079 -26.50853 -25.63337 -23.11621 -22.22478 -21.56622 -20.72711 -18.63723 -17.59895 -16.80243 -16.51709 -15.65978 -15.10373 -14.77587 -14.75255 -14.55401 -14.01950 -13.25557 -13.17718 -12.94459 -12.76708 -12.70727 -12.45982 -12.29494 -11.58235 -11.34001 -11.26104 -11.21553 -10.72100 -10.68092 -10.62841 -10.51280 -10.34247 -9.83382 -9.76010 -9.33157 -8.72753 -8.21746 -7.95781 -7.77234 -6.71878 -6.45352 -4.41238 1.14777 1.64805 2.43564 2.82870 3.09918 3.13198 3.15151 3.54022 3.96338 4.28030 4.39628 4.80379 5.09348 5.13348 5.19367 5.34885 5.67457 5.68754 5.69733 5.71809 5.83265 5.87692 5.88084 5.98339 6.07420 6.22289 6.24552 6.40781 6.61247 6.66079 6.70033 6.73552 6.89911 7.16317 7.24799 7.33391 7.42770 7.56268 7.61527 7.91277 8.18648 8.28718 8.69371 8.98362 9.98877 10.28836 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.005029 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.116610 B = 5565.978272 C = 7412.949876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.028 4.028 4 C -0.149 4.149 5 C -0.269 4.269 6 C 0.138 3.862 7 C -0.081 4.081 8 C -0.113 4.113 9 C -0.035 4.035 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.112 4.112 15 N -0.449 5.449 16 C 0.253 3.747 17 C -0.414 4.414 18 H 0.090 0.910 19 C 0.069 3.931 20 N -0.718 5.718 21 Si 0.910 3.090 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 7.473 -0.002 7.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.077 4.077 4 C -0.173 4.173 5 C -0.292 4.292 6 C -0.003 4.003 7 C -0.099 4.099 8 C -0.133 4.133 9 C -0.035 4.035 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.139 4.139 14 C -0.130 4.130 15 N -0.164 5.164 16 C 0.124 3.876 17 C -0.445 4.445 18 H 0.108 0.892 19 C -0.156 4.156 20 N -0.340 5.340 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.173 0.827 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.199 7.385 -0.002 7.482 hybrid contribution -0.950 -0.360 0.001 1.016 sum 0.249 7.025 0.000 7.029 Atomic orbital electron populations 1.22760 0.81690 1.01900 0.99949 1.85927 1.18335 1.27902 1.89985 1.20405 0.93711 0.83200 1.10352 1.20861 0.97729 0.92699 1.06041 1.21065 0.94256 0.96136 1.17773 1.19932 0.89666 0.92901 0.97772 1.21883 0.94148 0.94587 0.99315 1.22529 0.95240 0.95899 0.99620 1.19379 0.93336 0.93562 0.97218 1.21423 0.99983 0.91988 1.00850 1.21006 0.94466 0.97575 1.00885 1.21096 0.94245 0.97838 1.02366 1.21041 0.99547 0.92592 1.00759 1.21406 0.93779 0.98030 0.99787 1.69084 1.34525 0.95286 1.17551 1.18147 0.84942 0.92217 0.92255 1.19467 0.90639 0.92995 1.41429 0.89210 1.26026 0.98640 0.97281 0.93679 1.70082 1.10409 1.24594 1.28906 0.86342 0.78325 0.81963 0.79935 1.18960 1.20268 1.18957 0.89846 0.94170 0.94174 0.87887 0.88499 0.87437 0.82664 0.85913 0.86538 0.86738 0.86444 0.85639 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.03 9.60 -18.14 -0.17 -7.20 16 3 C -0.03 -0.70 6.74 -37.98 -0.26 -0.96 16 4 C -0.15 -3.37 9.11 -39.24 -0.36 -3.73 16 5 C -0.27 -6.06 9.83 -38.75 -0.38 -6.44 16 6 C 0.14 3.33 6.71 -83.11 -0.56 2.77 16 7 C -0.08 -1.66 9.28 -37.30 -0.35 -2.00 16 8 C -0.11 -2.28 9.44 -37.22 -0.35 -2.63 16 9 C -0.03 -0.60 5.87 -105.05 -0.62 -1.22 16 10 C -0.12 -1.88 9.41 -39.12 -0.37 -2.24 16 11 C -0.12 -1.58 10.03 -39.64 -0.40 -1.97 16 12 C -0.14 -1.71 10.04 -39.46 -0.40 -2.11 16 13 C -0.12 -1.61 10.03 -39.65 -0.40 -2.00 16 14 C -0.11 -1.74 9.80 -39.12 -0.38 -2.12 16 15 N -0.45 -12.09 6.79 -7.72 -0.05 -12.14 16 16 C 0.25 6.93 6.56 -84.86 -0.56 6.38 16 17 C -0.41 -11.13 8.94 -37.90 -0.34 -11.47 16 18 H 0.09 2.35 7.31 -52.49 -0.38 1.96 16 19 C 0.07 1.72 5.50 -17.34 -0.10 1.62 16 20 N -0.72 -18.32 11.05 55.55 0.61 -17.71 16 21 Si 0.91 18.61 29.56 -169.99 -5.02 13.58 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 27 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 28 H 0.10 1.99 6.42 -52.49 -0.34 1.65 16 29 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.11 1.87 6.07 -52.49 -0.32 1.55 16 31 H 0.16 3.55 6.98 -52.49 -0.37 3.19 16 32 H 0.12 1.70 6.17 -52.49 -0.32 1.38 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.27 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -29.37 320.48 -8.81 -38.19 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.20 Total: 7.04 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -4.81 Total: -26.59 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.56 Total: -29.85 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.17 Total: -7.20 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.37 -8.81 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239592975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.514 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds