Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35482 * 117.00087 * 2 1 4 4 C 1.39206 * 120.45026 * 359.97438 * 3 2 1 5 5 C 1.38185 * 118.68102 * 180.02562 * 4 3 2 6 6 C 1.40488 * 119.55005 * 359.97438 * 5 4 3 7 7 C 1.47116 * 119.55355 * 180.02562 * 6 5 4 8 8 C 1.34508 * 120.00051 * 180.02562 * 7 6 5 9 9 C 1.47286 * 120.00349 * 179.97438 * 8 7 6 10 10 C 1.39808 * 120.16388 * 359.71923 * 9 8 7 11 11 C 1.37902 * 119.82889 * 179.76845 * 10 9 8 12 12 C 1.38403 * 120.16609 * 0.51000 * 11 10 9 13 13 C 1.38390 * 120.33501 * 359.74464 * 12 11 10 14 14 C 1.37906 * 120.17398 * 359.97438 * 13 12 11 15 15 N 1.32544 * 120.89295 * 0.02562 * 6 5 4 16 16 C 1.33525 * 121.40944 * 359.97438 * 15 6 5 17 17 C 1.40954 * 119.81693 * 179.97438 * 16 15 6 18 18 H 1.07997 * 120.00160 * 179.97438 * 17 16 15 19 19 C 1.39977 * 119.99599 * 0.02562 * 17 16 15 20 20 N 1.30793 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99648 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47338 * 59.99782 * 21 19 17 23 23 H 1.48501 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47198 * 299.99686 * 21 19 17 25 25 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46881 * 300.00406 * 1 2 3 27 27 H 1.08999 * 109.46682 * 60.00623 * 1 2 3 28 28 H 1.08002 * 120.65394 * 0.27583 * 4 3 2 29 29 H 1.08001 * 120.22145 * 180.02562 * 5 4 3 30 30 H 1.07993 * 120.00410 * 359.97438 * 7 6 5 31 31 H 1.08001 * 119.99806 * 359.97438 * 8 7 6 32 32 H 1.08002 * 120.08176 * 0.02562 * 10 9 8 33 33 H 1.07992 * 119.91463 * 180.27643 * 11 10 9 34 34 H 1.07992 * 119.82660 * 179.76551 * 12 11 10 35 35 H 1.08004 * 119.91675 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.08749 * 180.02562 * 14 13 12 37 37 H 0.97005 * 120.00045 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2071 0.0000 4 6 1.2952 2.3806 -0.0005 5 6 1.9602 3.5918 -0.0011 6 6 3.3650 3.6109 -0.0005 7 6 4.0731 4.9005 -0.0005 8 6 5.4179 4.9293 -0.0005 9 6 6.1269 6.2202 -0.0010 10 6 5.4056 7.4179 -0.0075 11 6 6.0765 8.6227 -0.0031 12 6 7.4603 8.6482 -0.0030 13 6 8.1812 7.4669 -0.0020 14 6 7.5245 6.2542 -0.0005 15 7 4.0609 2.4829 0.0000 16 6 3.4565 1.2923 0.0005 17 6 4.2296 0.1138 0.0005 18 1 3.7438 -0.8508 0.0014 19 6 5.6271 0.1936 0.0005 20 7 6.2155 1.3617 0.0000 21 14 6.6518 -1.3684 0.0013 22 1 6.3380 -2.1668 -1.2109 23 1 8.0939 -1.0142 0.0005 24 1 6.3380 -2.1656 1.2141 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 0.2157 2.3448 0.0035 29 1 1.4039 4.5175 -0.0011 30 1 3.5133 5.8240 -0.0013 31 1 5.9778 4.0057 0.0000 32 1 4.3258 7.3994 -0.0117 33 1 5.5207 9.5486 -0.0036 34 1 7.9801 9.5948 -0.0034 35 1 9.2608 7.4946 -0.0015 36 1 8.0884 5.3331 0.0008 37 1 7.1839 1.4170 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239592975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = 19.250578 kcal Electronic energy + Delta-G solvation = -20415.236887 eV Core-core repulsion = 17315.306181 eV Total energy + Delta-G solvation = -3099.930706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69867 -39.94083 -38.51264 -35.79988 -34.84156 -32.30392 -31.87856 -31.74377 -29.51419 -28.05874 -27.35952 -24.51924 -23.41870 -23.34196 -22.23245 -20.14227 -19.43216 -18.44925 -17.75169 -17.35081 -16.64927 -16.33999 -16.27682 -15.83023 -15.39422 -14.74019 -14.64804 -14.35064 -14.18568 -14.15981 -14.02225 -13.74460 -13.12333 -12.96566 -12.88385 -12.75022 -12.35388 -12.15287 -12.12971 -11.90021 -11.69321 -11.56321 -11.37622 -10.92400 -10.03481 -9.80977 -9.62417 -9.49048 -8.39078 -8.29075 -6.35463 -0.19126 0.56233 0.84459 1.03936 1.40563 1.51053 1.52296 1.97299 2.24892 2.83662 2.89932 3.11712 3.83974 3.92595 3.97553 4.13564 4.19579 4.24526 4.35526 4.38572 4.46561 4.54276 4.60159 4.64542 4.68457 4.72153 4.89373 5.03491 5.17052 5.22817 5.30628 5.39884 5.54311 5.62087 5.64630 5.71325 5.88727 6.02361 6.15972 6.21766 6.32446 6.41696 6.81829 7.15016 8.12663 8.46453 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.005029 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.116610 B = 5565.978272 C = 7412.949876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.048 4.048 4 C -0.148 4.148 5 C -0.266 4.266 6 C 0.111 3.889 7 C -0.102 4.102 8 C -0.103 4.103 9 C -0.068 4.068 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.125 4.125 13 C -0.123 4.123 14 C -0.128 4.128 15 N -0.478 5.478 16 C 0.214 3.786 17 C -0.454 4.454 18 H 0.083 0.917 19 C 0.026 3.974 20 N -0.749 5.749 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.262 1.262 25 H 0.114 0.886 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 9.772 -0.003 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C -0.096 4.096 4 C -0.172 4.172 5 C -0.289 4.289 6 C -0.028 4.028 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.068 4.068 10 C -0.146 4.146 11 C -0.139 4.139 12 C -0.143 4.143 13 C -0.141 4.141 14 C -0.146 4.146 15 N -0.193 5.193 16 C 0.085 3.915 17 C -0.486 4.486 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.371 5.371 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.186 1.186 25 H 0.132 0.868 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.135 0.865 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.026 9.702 -0.002 9.756 hybrid contribution -0.955 -0.883 0.001 1.300 sum 0.071 8.819 -0.001 8.819 Atomic orbital electron populations 1.23122 0.78524 1.04430 1.00972 1.85867 1.21620 1.27225 1.90019 1.20465 0.93472 0.84768 1.10913 1.21253 0.99465 0.91842 1.04646 1.21509 0.93951 0.97642 1.15766 1.20609 0.91066 0.93554 0.97601 1.21990 0.94338 0.94245 1.01475 1.22453 0.95331 0.96417 0.98097 1.19296 0.94045 0.92879 1.00577 1.21600 1.00579 0.91953 1.00444 1.21417 0.95087 0.97903 0.99485 1.21597 0.94278 0.98935 0.99492 1.21371 1.01082 0.91870 0.99793 1.21525 0.93454 0.99137 1.00474 1.69040 1.35898 0.95976 1.18400 1.18607 0.86808 0.92793 0.93286 1.19658 0.91999 0.92841 1.44098 0.89898 1.26861 0.99136 1.00692 0.92864 1.70185 1.10852 1.26516 1.29567 0.85245 0.76902 0.77583 0.79844 1.18639 1.18952 1.18632 0.86763 0.92999 0.93008 0.84343 0.85072 0.84135 0.86251 0.85029 0.83212 0.83061 0.83771 0.86520 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.83 113.37 1.11 1.90 16 2 O -0.33 -15.46 9.60 -87.82 -0.84 -16.30 16 3 C -0.05 -2.45 6.74 23.30 0.16 -2.29 16 4 C -0.15 -6.61 9.11 22.49 0.20 -6.40 16 5 C -0.27 -11.87 9.83 22.81 0.22 -11.65 16 6 C 0.11 5.55 6.71 41.92 0.28 5.83 16 7 C -0.10 -4.29 9.28 23.75 0.22 -4.07 16 8 C -0.10 -4.35 9.44 23.80 0.22 -4.13 16 9 C -0.07 -2.34 5.87 -20.14 -0.12 -2.46 16 10 C -0.13 -3.62 9.41 22.57 0.21 -3.41 16 11 C -0.12 -2.70 10.03 22.23 0.22 -2.47 16 12 C -0.13 -2.60 10.04 22.35 0.22 -2.38 16 13 C -0.12 -2.96 10.03 22.23 0.22 -2.74 16 14 C -0.13 -3.98 9.80 22.57 0.22 -3.75 16 15 N -0.48 -27.17 6.79 -178.34 -1.21 -28.38 16 16 C 0.21 12.38 6.56 40.35 0.26 12.65 16 17 C -0.45 -25.94 8.94 23.36 0.21 -25.73 16 18 H 0.08 4.62 7.31 -2.91 -0.02 4.60 16 19 C 0.03 1.37 5.50 85.27 0.47 1.83 16 20 N -0.75 -40.59 11.05 21.83 0.24 -40.34 16 21 Si 0.98 39.75 29.56 68.60 2.03 41.77 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.05 1.52 7.68 -2.39 -0.02 1.50 16 27 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 28 H 0.14 5.03 6.42 -2.91 -0.02 5.01 16 29 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.14 4.77 6.07 -2.91 -0.02 4.75 16 31 H 0.12 5.93 6.98 -2.91 -0.02 5.91 16 32 H 0.13 3.37 6.17 -2.91 -0.02 3.36 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.28 13.65 8.30 -92.70 -0.77 12.88 16 Total: -1.00 -68.95 320.48 5.65 -63.30 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 1.08 Total: 29.23 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 4.35 Total: -49.27 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -0.97 Total: -68.73 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.84 Total: -16.30 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Total: -68.95 5.65 -63.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239592975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.555 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds