Wall clock time and date at job start Tue Mar 31 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21285 * 120.00317 * 2 1 4 4 N 1.34779 * 119.99404 * 180.02562 * 2 1 3 5 5 C 1.39643 * 119.99520 * 185.43456 * 4 2 1 6 6 C 1.39112 * 119.92199 * 219.27815 * 5 4 2 7 7 C 1.37718 * 120.07981 * 179.72364 * 6 5 4 8 8 C 1.39769 * 119.91683 * 0.25617 * 7 6 5 9 9 C 1.47748 * 120.07273 * 179.97438 * 8 7 6 10 10 C 1.39251 * 120.34408 * 309.72272 * 9 8 7 11 11 C 1.38019 * 119.97865 * 179.77000 * 10 9 8 12 12 C 1.38970 * 120.68287 * 0.51166 * 11 10 9 13 13 C 1.36398 * 120.70382 * 359.74682 * 12 11 10 14 14 C 1.40766 * 119.98803 * 359.97438 * 13 12 11 15 15 C 1.40841 * 120.33250 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00001 * 155.55445 * 15 14 13 17 17 C 1.40040 * 119.99722 * 335.54560 * 15 14 13 18 18 N 1.30786 * 120.00561 * 332.13049 * 17 15 14 19 19 Si 1.86807 * 119.99627 * 152.12491 * 17 15 14 20 20 H 1.48501 * 109.47230 * 94.99075 * 19 17 15 21 21 H 1.48498 * 109.46894 * 214.98954 * 19 17 15 22 22 H 1.48494 * 109.47119 * 334.99090 * 19 17 15 23 23 C 1.39762 * 119.84716 * 359.97438 * 8 7 6 24 24 C 1.37712 * 119.92131 * 0.02562 * 23 8 7 25 25 H 1.08996 * 109.46994 * 270.00472 * 1 2 3 26 26 H 1.09000 * 109.46642 * 29.99802 * 1 2 3 27 27 H 1.08997 * 109.47212 * 149.99851 * 1 2 3 28 28 H 0.97001 * 120.00323 * 5.43594 * 4 2 1 29 29 H 1.08002 * 119.96410 * 0.02562 * 6 5 4 30 30 H 1.07998 * 120.03878 * 180.23094 * 7 6 5 31 31 H 1.08003 * 120.00850 * 0.02700 * 10 9 8 32 32 H 1.08006 * 119.65827 * 180.25332 * 11 10 9 33 33 H 1.07995 * 119.64677 * 179.76213 * 12 11 10 34 34 H 1.07998 * 120.00594 * 179.97438 * 13 12 11 35 35 H 0.97003 * 120.00370 * 179.97438 * 18 17 15 36 36 H 1.08004 * 120.03924 * 179.97438 * 23 8 7 37 37 H 1.07998 * 119.95868 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5725 -1.1701 0.1140 6 6 4.3285 -2.0672 -0.6335 7 6 5.7016 -2.0690 -0.5274 8 6 6.3351 -1.1715 0.3368 9 6 7.8079 -1.1707 0.4538 10 6 8.4963 -2.3600 0.6795 11 6 9.8726 -2.3513 0.7828 12 6 10.5843 -1.1626 0.6744 13 6 9.9380 0.0190 0.4587 14 6 8.5353 0.0427 0.3429 15 6 7.8605 1.2588 0.1205 16 1 6.8881 1.2587 -0.3494 17 6 8.4503 2.4680 0.5091 18 7 9.2934 2.4931 1.5086 19 14 8.0330 4.0454 -0.4005 20 1 6.9429 4.7559 0.3152 21 1 9.2351 4.9152 -0.4602 22 1 7.5892 3.7190 -1.7795 23 6 5.5721 -0.2748 1.0899 24 6 4.1995 -0.2787 0.9787 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6990 -2.0054 -0.0805 29 1 3.8384 -2.7600 -1.3016 30 1 6.2881 -2.7632 -1.1108 31 1 7.9537 -3.2895 0.7695 32 1 10.4016 -3.2773 0.9538 33 1 11.6607 -1.1746 0.7618 34 1 10.5023 0.9361 0.3767 35 1 9.7022 3.3306 1.7775 36 1 6.0584 0.4198 1.7589 37 1 3.6093 0.4136 1.5607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239755733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:56 Heat of formation + Delta-G solvation = -0.211552 kcal Electronic energy + Delta-G solvation = -20814.811950 eV Core-core repulsion = 17714.037303 eV Total energy + Delta-G solvation = -3100.774647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12072 -38.39583 -37.01526 -34.47336 -33.75670 -31.30286 -30.44040 -29.75430 -29.48810 -27.10687 -25.21268 -22.71294 -22.02411 -20.90429 -20.26414 -19.57219 -17.52476 -17.22220 -16.71831 -15.79218 -15.36222 -15.06622 -14.28236 -14.13594 -14.01659 -13.43201 -13.35911 -12.97902 -12.81438 -12.67146 -12.49312 -12.32615 -11.91398 -11.70209 -11.43804 -11.19467 -11.06185 -10.71534 -10.58737 -10.45272 -9.98999 -9.77855 -9.45078 -9.42213 -9.09551 -8.25530 -7.88957 -7.48341 -7.09379 -6.84557 -4.34020 1.74723 2.11945 2.66454 2.81206 3.06714 3.08086 3.13378 3.26447 3.28520 3.92215 4.48839 4.56020 4.74320 5.02092 5.21387 5.44438 5.55886 5.61215 5.67097 5.91755 6.07363 6.16812 6.18965 6.23168 6.39454 6.59912 6.74411 6.83432 6.94407 6.99836 7.12441 7.14753 7.30271 7.48765 7.55460 7.56472 7.67884 7.91454 8.02206 8.08011 8.23646 8.27595 8.56897 8.81230 8.92581 10.02854 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.005933 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.340701 B = 4718.318450 C = 6319.992569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.502 3.498 3 O -0.525 6.525 4 N -0.672 5.672 5 C 0.104 3.896 6 C -0.143 4.143 7 C -0.118 4.118 8 C 0.016 3.984 9 C -0.194 4.194 10 C -0.065 4.065 11 C -0.253 4.253 12 C -0.095 4.095 13 C -0.169 4.169 14 C 0.134 3.866 15 C -0.454 4.454 16 H 0.087 0.913 17 C 0.086 3.914 18 N -0.771 5.771 19 Si 0.895 3.105 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.083 4.083 24 C -0.117 4.117 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.404 0.596 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.284 0.716 36 H 0.133 0.867 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -5.815 -1.787 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.289 3.711 3 O -0.400 6.400 4 N -0.318 5.318 5 C 0.011 3.989 6 C -0.163 4.163 7 C -0.136 4.136 8 C 0.016 3.984 9 C -0.196 4.196 10 C -0.083 4.083 11 C -0.272 4.272 12 C -0.114 4.114 13 C -0.188 4.188 14 C 0.131 3.869 15 C -0.481 4.481 16 H 0.105 0.895 17 C -0.135 4.135 18 N -0.394 5.394 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.101 4.101 24 C -0.137 4.137 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.239 0.761 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.625 -4.863 -1.609 12.703 hybrid contribution -0.327 0.344 -0.378 0.607 sum -11.951 -4.518 -1.988 12.931 Atomic orbital electron populations 1.21869 0.91480 1.04812 1.04763 1.20928 0.90578 0.83590 0.75968 1.90798 1.70494 1.31124 1.47569 1.43458 1.05822 1.09142 1.73390 1.17588 0.81847 1.00398 0.99034 1.20632 0.94033 1.01329 1.00284 1.21077 0.93090 1.00156 0.99308 1.18860 0.93227 0.93056 0.93304 1.18523 0.89814 0.94163 1.17095 1.20555 0.93749 0.95365 0.98633 1.20211 0.93855 0.96489 1.16637 1.20421 0.97411 0.93485 1.00085 1.20831 0.94438 0.96377 1.07169 1.17470 0.91352 0.91265 0.86767 1.19585 1.04517 0.89977 1.34052 0.89493 1.25943 0.93170 1.01361 0.93037 1.69870 1.21654 1.29510 1.18385 0.86500 0.79040 0.80802 0.81848 1.19239 1.19902 1.18058 1.21347 0.91941 0.98021 0.98807 1.20873 0.95011 0.99358 0.98412 0.88785 0.88845 0.90270 0.76102 0.86915 0.86377 0.89269 0.89513 0.89591 0.87532 0.90533 0.84928 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.31 36.01 0.37 -0.95 16 2 C 0.50 6.82 7.63 -10.98 -0.08 6.73 16 3 O -0.52 -10.00 15.22 5.55 0.08 -9.91 16 4 N -0.67 -8.58 5.31 -9.81 -0.05 -8.63 16 5 C 0.10 1.75 6.16 -83.65 -0.51 1.24 16 6 C -0.14 -2.33 9.95 -39.45 -0.39 -2.72 16 7 C -0.12 -2.20 9.52 -39.20 -0.37 -2.58 16 8 C 0.02 0.35 4.93 -104.87 -0.52 -0.17 16 9 C -0.19 -4.68 5.52 -104.23 -0.58 -5.26 16 10 C -0.06 -1.45 9.51 -39.29 -0.37 -1.83 16 11 C -0.25 -5.64 10.03 -39.39 -0.40 -6.04 16 12 C -0.10 -2.23 9.96 -39.97 -0.40 -2.63 16 13 C -0.17 -4.33 8.69 -39.29 -0.34 -4.67 16 14 C 0.13 3.51 5.55 -106.55 -0.59 2.91 16 15 C -0.45 -11.86 7.11 -37.92 -0.27 -12.12 16 16 H 0.09 2.31 6.60 -52.48 -0.35 1.96 16 17 C 0.09 2.15 4.88 -17.32 -0.08 2.06 16 18 N -0.77 -19.51 11.62 55.55 0.65 -18.86 16 19 Si 0.89 19.01 29.64 -169.99 -5.04 13.98 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.08 -1.79 7.94 -39.20 -0.31 -2.10 16 24 C -0.12 -2.28 8.63 -39.45 -0.34 -2.62 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.40 3.44 8.83 -40.82 -0.36 3.08 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 2.05 8.05 -52.49 -0.42 1.63 16 31 H 0.09 1.77 8.05 -52.48 -0.42 1.35 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.11 2.78 6.53 -52.49 -0.34 2.44 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.13 3.09 7.31 -52.48 -0.38 2.70 16 37 H 0.12 2.29 6.87 -52.49 -0.36 1.93 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -30.53 318.53 -9.06 -39.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.31 Total: 9.77 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -5.19 Total: -30.73 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.59 Total: -27.49 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.04 Total: 13.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.53 -9.06 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239755733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.376 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds