Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21290 * 120.00217 * 2 1 4 4 N 1.34778 * 120.00392 * 179.97438 * 2 1 3 5 5 C 1.39833 * 120.00126 * 185.09022 * 4 2 1 6 6 C 1.38972 * 119.94659 * 33.16585 * 5 4 2 7 7 C 1.37867 * 120.04601 * 180.02562 * 6 5 4 8 8 C 1.39393 * 119.95056 * 359.96931 * 7 6 5 9 9 C 1.48367 * 120.05088 * 179.97438 * 8 7 6 10 10 C 1.39755 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.38384 * 120.38015 * 179.70147 * 10 9 8 12 12 C 1.37726 * 120.37713 * 0.27311 * 11 10 9 13 13 C 1.40760 * 119.99602 * 359.97438 * 12 11 10 14 14 C 1.41421 * 120.18398 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99992 * 209.19635 * 14 13 12 16 16 C 1.39930 * 120.00225 * 29.19222 * 14 13 12 17 17 N 1.30830 * 119.99959 * 15.66416 * 16 14 13 18 18 Si 1.86800 * 120.00091 * 195.66172 * 16 14 13 19 19 H 1.48504 * 109.46883 * 90.00139 * 18 16 14 20 20 H 1.48493 * 109.47091 * 210.00008 * 18 16 14 21 21 H 1.48503 * 109.46971 * 329.99969 * 18 16 14 22 22 C 1.38756 * 120.00602 * 180.25950 * 9 8 7 23 23 C 1.39393 * 119.90240 * 0.26116 * 8 7 6 24 24 C 1.37868 * 119.94765 * 359.50767 * 23 8 7 25 25 H 1.09008 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47430 * 299.99856 * 1 2 3 27 27 H 1.08999 * 109.47046 * 60.00868 * 1 2 3 28 28 H 0.97001 * 119.99831 * 5.09126 * 4 2 1 29 29 H 1.07999 * 119.97991 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.02696 * 180.02562 * 7 6 5 31 31 H 1.08007 * 119.81105 * 359.97008 * 10 9 8 32 32 H 1.07995 * 119.81170 * 180.29473 * 11 10 9 33 33 H 1.08003 * 119.99603 * 179.97438 * 12 11 10 34 34 H 0.96994 * 120.00207 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.18712 * 359.97438 * 22 9 8 36 36 H 1.07993 * 120.02517 * 179.71942 * 23 8 7 37 37 H 1.08001 * 119.97456 * 180.23498 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5751 -1.1694 0.1080 6 6 4.2144 -0.1925 0.8617 7 6 5.5889 -0.1925 0.9686 8 6 6.3373 -1.1737 0.3205 9 6 7.8167 -1.1755 0.4336 10 6 8.4609 -0.1932 1.1907 11 6 9.8399 -0.1910 1.3065 12 6 10.5935 -1.1536 0.6723 13 6 9.9615 -2.1474 -0.0986 14 6 10.7315 -3.1374 -0.7520 15 1 10.3731 -3.5830 -1.6682 16 6 11.9580 -3.5397 -0.2115 17 7 12.2550 -3.2443 1.0279 18 14 13.1710 -4.4986 -1.2596 19 1 14.0738 -3.5521 -1.9628 20 1 13.9743 -5.3960 -0.3910 21 1 12.4293 -5.3097 -2.2582 22 6 8.5611 -2.1495 -0.2164 23 6 5.6942 -2.1498 -0.4389 24 6 4.3192 -2.1487 -0.5391 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6988 -2.0056 -0.0737 29 1 3.6341 0.5673 1.3641 30 1 6.0854 0.5667 1.5548 31 1 7.8788 0.5661 1.6919 32 1 10.3278 0.5696 1.8978 33 1 11.6694 -1.1459 0.7665 34 1 13.1049 -3.5235 1.4027 35 1 8.0668 -2.9080 -0.8051 36 1 6.2724 -2.9082 -0.9456 37 1 3.8203 -2.9071 -1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239757224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = 1.320238 kcal Electronic energy + Delta-G solvation = -20080.123872 eV Core-core repulsion = 16979.415648 eV Total energy + Delta-G solvation = -3100.708224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43389 -38.63363 -37.13760 -34.85596 -33.57380 -31.36729 -30.85732 -29.77111 -29.74051 -27.00204 -25.32978 -23.01341 -22.54957 -20.89413 -20.18323 -19.85440 -17.81443 -17.30556 -16.94931 -15.65094 -15.53864 -14.95335 -14.90292 -14.34571 -14.16947 -13.38109 -13.28240 -13.22091 -13.06063 -12.88288 -12.72057 -12.41329 -12.29638 -11.66030 -11.43034 -11.39371 -11.07433 -10.94934 -10.70095 -10.39176 -10.19397 -9.92396 -9.64228 -9.36355 -9.19918 -8.61365 -8.30083 -7.47368 -6.86363 -6.73081 -4.37893 1.32377 1.76906 2.42561 2.79812 2.99309 3.07674 3.10256 3.11443 3.23183 3.94690 4.24444 4.52911 4.71432 4.82396 5.07370 5.15562 5.28122 5.44190 5.49633 5.68259 5.70827 5.78459 5.83766 6.18934 6.34718 6.43880 6.49583 6.58177 6.75186 6.88257 6.90011 7.02725 7.18635 7.31315 7.35573 7.37251 7.56499 7.82854 7.99570 8.00590 8.03528 8.24836 8.59953 8.88046 8.92763 10.22958 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.003208 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.899150 B = 8725.908425 C = 9316.464418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.505 3.495 3 O -0.528 6.528 4 N -0.670 5.670 5 C 0.115 3.885 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.021 4.021 9 C -0.043 4.043 10 C -0.216 4.216 11 C -0.109 4.109 12 C -0.149 4.149 13 C 0.108 3.892 14 C -0.469 4.469 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.198 4.198 23 C -0.102 4.102 24 C -0.141 4.141 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.407 0.593 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.280 0.720 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 0.819 -0.955 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.293 3.707 3 O -0.404 6.404 4 N -0.316 5.316 5 C 0.022 3.978 6 C -0.137 4.137 7 C -0.122 4.122 8 C -0.022 4.022 9 C -0.043 4.043 10 C -0.235 4.235 11 C -0.128 4.128 12 C -0.168 4.168 13 C 0.106 3.894 14 C -0.499 4.499 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.427 5.427 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.218 4.218 23 C -0.120 4.120 24 C -0.161 4.161 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.243 0.757 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.412 1.548 -0.762 16.502 hybrid contribution 0.371 -0.960 -0.377 1.096 sum -16.041 0.588 -1.139 16.092 Atomic orbital electron populations 1.21845 0.91123 1.04348 1.05512 1.20963 0.90729 0.83399 0.75620 1.90762 1.70431 1.31249 1.47923 1.43601 1.05663 1.09482 1.72833 1.17674 0.82069 0.98666 0.99409 1.20950 0.94655 0.99099 0.99009 1.21172 0.92734 0.98608 0.99718 1.19171 0.93637 0.93870 0.95477 1.18325 0.89281 0.97013 0.99658 1.20472 0.94243 1.01645 1.07136 1.20639 0.93614 0.98579 0.99947 1.21362 0.99423 0.94510 1.01545 1.17540 0.90614 0.91040 0.90194 1.19515 1.02357 1.19243 1.08828 0.90450 1.25855 0.98326 0.95341 0.94536 1.69806 1.22491 1.37933 1.12424 0.86321 0.80251 0.79661 0.80508 1.19346 1.20392 1.18688 1.21135 0.93836 1.00439 1.06377 1.21130 0.93158 0.98876 0.98854 1.20724 0.94096 1.00075 1.01231 0.90463 0.88481 0.88567 0.75707 0.85423 0.85504 0.88928 0.89092 0.86769 0.90944 0.88408 0.85124 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.39 36.00 0.37 -0.62 16 2 C 0.50 5.66 7.68 -10.99 -0.08 5.57 16 3 O -0.53 -8.47 14.76 5.55 0.08 -8.39 16 4 N -0.67 -7.12 5.34 -9.84 -0.05 -7.17 16 5 C 0.11 1.67 6.28 -83.66 -0.53 1.14 16 6 C -0.12 -1.93 8.64 -39.45 -0.34 -2.27 16 7 C -0.10 -1.86 9.42 -39.29 -0.37 -2.23 16 8 C -0.02 -0.41 5.88 -104.87 -0.62 -1.03 16 9 C -0.04 -0.96 5.87 -104.97 -0.62 -1.58 16 10 C -0.22 -4.84 9.43 -38.96 -0.37 -5.21 16 11 C -0.11 -2.56 10.01 -39.71 -0.40 -2.96 16 12 C -0.15 -3.86 8.66 -38.82 -0.34 -4.20 16 13 C 0.11 2.87 5.52 -106.87 -0.59 2.28 16 14 C -0.47 -12.37 9.04 -37.74 -0.34 -12.71 16 15 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 16 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 17 N -0.80 -20.78 11.15 55.55 0.62 -20.16 16 18 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.20 -4.82 9.17 -38.53 -0.35 -5.17 16 23 C -0.10 -1.75 9.41 -39.29 -0.37 -2.12 16 24 C -0.14 -2.03 9.95 -39.44 -0.39 -2.42 16 25 H 0.08 0.24 7.92 -51.92 -0.41 -0.17 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.41 2.73 8.66 -40.82 -0.35 2.37 16 29 H 0.13 2.08 6.38 -52.49 -0.34 1.75 16 30 H 0.13 2.16 6.18 -52.48 -0.32 1.83 16 31 H 0.09 1.84 6.18 -52.48 -0.32 1.52 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.11 3.04 6.43 -52.48 -0.34 2.70 16 34 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 35 H 0.10 2.20 6.18 -52.49 -0.32 1.88 16 36 H 0.13 2.18 6.19 -52.49 -0.32 1.85 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -31.09 315.34 -9.02 -40.11 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.97 Total: 8.89 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -5.42 Total: -31.69 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.57 Total: -27.33 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.39 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.09 -9.02 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239757224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.425 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds