Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21290 * 120.00217 * 2 1 4 4 N 1.34778 * 120.00392 * 179.97438 * 2 1 3 5 5 C 1.39833 * 120.00126 * 185.09022 * 4 2 1 6 6 C 1.38972 * 119.94659 * 33.16585 * 5 4 2 7 7 C 1.37867 * 120.04601 * 180.02562 * 6 5 4 8 8 C 1.39393 * 119.95056 * 359.96931 * 7 6 5 9 9 C 1.48367 * 120.05088 * 179.97438 * 8 7 6 10 10 C 1.39755 * 120.00282 * 0.02562 * 9 8 7 11 11 C 1.38384 * 120.38015 * 179.70147 * 10 9 8 12 12 C 1.37726 * 120.37713 * 0.27311 * 11 10 9 13 13 C 1.40760 * 119.99602 * 359.97438 * 12 11 10 14 14 C 1.41421 * 120.18398 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99992 * 209.19635 * 14 13 12 16 16 C 1.39930 * 120.00225 * 29.19222 * 14 13 12 17 17 N 1.30830 * 119.99959 * 15.66416 * 16 14 13 18 18 Si 1.86800 * 120.00091 * 195.66172 * 16 14 13 19 19 H 1.48504 * 109.46883 * 90.00139 * 18 16 14 20 20 H 1.48493 * 109.47091 * 210.00008 * 18 16 14 21 21 H 1.48503 * 109.46971 * 329.99969 * 18 16 14 22 22 C 1.38756 * 120.00602 * 180.25950 * 9 8 7 23 23 C 1.39393 * 119.90240 * 0.26116 * 8 7 6 24 24 C 1.37868 * 119.94765 * 359.50767 * 23 8 7 25 25 H 1.09008 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47430 * 299.99856 * 1 2 3 27 27 H 1.08999 * 109.47046 * 60.00868 * 1 2 3 28 28 H 0.97001 * 119.99831 * 5.09126 * 4 2 1 29 29 H 1.07999 * 119.97991 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.02696 * 180.02562 * 7 6 5 31 31 H 1.08007 * 119.81105 * 359.97008 * 10 9 8 32 32 H 1.07995 * 119.81170 * 180.29473 * 11 10 9 33 33 H 1.08003 * 119.99603 * 179.97438 * 12 11 10 34 34 H 0.96994 * 120.00207 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.18712 * 359.97438 * 22 9 8 36 36 H 1.07993 * 120.02517 * 179.71942 * 23 8 7 37 37 H 1.08001 * 119.97456 * 180.23498 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5751 -1.1694 0.1080 6 6 4.2144 -0.1925 0.8617 7 6 5.5889 -0.1925 0.9686 8 6 6.3373 -1.1737 0.3205 9 6 7.8167 -1.1755 0.4336 10 6 8.4609 -0.1932 1.1907 11 6 9.8399 -0.1910 1.3065 12 6 10.5935 -1.1536 0.6723 13 6 9.9615 -2.1474 -0.0986 14 6 10.7315 -3.1374 -0.7520 15 1 10.3731 -3.5830 -1.6682 16 6 11.9580 -3.5397 -0.2115 17 7 12.2550 -3.2443 1.0279 18 14 13.1710 -4.4986 -1.2596 19 1 14.0738 -3.5521 -1.9628 20 1 13.9743 -5.3960 -0.3910 21 1 12.4293 -5.3097 -2.2582 22 6 8.5611 -2.1495 -0.2164 23 6 5.6942 -2.1498 -0.4389 24 6 4.3192 -2.1487 -0.5391 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6988 -2.0056 -0.0737 29 1 3.6341 0.5673 1.3641 30 1 6.0854 0.5667 1.5548 31 1 7.8788 0.5661 1.6919 32 1 10.3278 0.5696 1.8978 33 1 11.6694 -1.1459 0.7665 34 1 13.1049 -3.5235 1.4027 35 1 8.0668 -2.9080 -0.8051 36 1 6.2724 -2.9082 -0.9456 37 1 3.8203 -2.9071 -1.1243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239757224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = -16.157119 kcal Electronic energy + Delta-G solvation = -20080.881747 eV Core-core repulsion = 16979.415648 eV Total energy + Delta-G solvation = -3101.466099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49674 -40.04367 -38.73118 -36.12688 -35.29024 -32.68126 -32.30224 -31.48562 -30.75838 -28.36833 -27.20366 -24.37063 -23.97338 -22.30147 -21.85078 -21.18342 -19.19256 -18.82415 -17.88272 -17.33985 -16.71669 -16.59164 -16.33880 -15.68498 -15.26424 -14.99039 -14.78321 -14.55514 -14.45006 -14.17305 -13.95824 -13.48208 -13.37622 -13.10923 -13.01278 -12.92084 -12.67041 -12.55290 -12.32159 -12.00500 -11.55600 -11.44994 -11.18703 -11.04154 -10.90303 -9.89850 -9.77680 -9.38076 -8.62816 -8.43476 -6.36040 -0.06505 0.47377 0.98371 1.20704 1.38801 1.50560 1.52112 1.71032 2.15184 2.22225 2.68831 3.01465 3.76193 3.78813 3.96068 3.99172 4.04197 4.38676 4.42639 4.49660 4.55248 4.60318 4.67648 4.73227 4.96432 5.03918 5.10296 5.13450 5.20306 5.28226 5.36158 5.38685 5.49271 5.63408 5.74303 5.99928 6.05671 6.07254 6.18383 6.37800 6.47999 6.67356 6.94353 7.00703 7.16442 8.37818 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.003208 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.899150 B = 8725.908425 C = 9316.464418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.500 3.500 3 O -0.581 6.581 4 N -0.658 5.658 5 C 0.129 3.871 6 C -0.130 4.130 7 C -0.106 4.106 8 C -0.058 4.058 9 C -0.037 4.037 10 C -0.223 4.223 11 C -0.111 4.111 12 C -0.180 4.180 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.834 5.834 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.257 1.257 22 C -0.217 4.217 23 C -0.105 4.105 24 C -0.132 4.132 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.430 0.570 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.287 0.713 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.816 -0.034 -1.612 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.291 3.709 3 O -0.460 6.460 4 N -0.305 5.305 5 C 0.035 3.965 6 C -0.150 4.150 7 C -0.124 4.124 8 C -0.059 4.059 9 C -0.037 4.037 10 C -0.242 4.242 11 C -0.129 4.129 12 C -0.200 4.200 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.095 0.905 16 C -0.179 4.179 17 N -0.460 5.460 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.181 1.181 22 C -0.236 4.236 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.270 0.730 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.324 0.670 -1.414 19.387 hybrid contribution 0.980 -0.619 -0.136 1.167 sum -18.344 0.051 -1.550 18.410 Atomic orbital electron populations 1.21890 0.86436 1.07019 1.06349 1.22019 0.92820 0.82375 0.73701 1.90750 1.71914 1.33166 1.50208 1.43632 1.03996 1.10880 1.72015 1.17837 0.84181 0.97229 0.97273 1.21029 0.94113 0.99980 0.99888 1.21198 0.93450 0.98231 0.99522 1.19088 0.91964 0.96273 0.98576 1.18669 0.91342 0.95801 0.97932 1.20825 0.94097 1.02241 1.07057 1.20918 0.94239 0.98333 0.99404 1.21308 0.98850 0.96104 1.03734 1.17908 0.91867 0.91550 0.90894 1.19770 1.03971 1.20295 1.09380 0.90543 1.26728 0.99576 0.96107 0.95535 1.69873 1.23265 1.38984 1.13915 0.85198 0.77557 0.78220 0.78675 1.18840 1.19354 1.18091 1.21302 0.93348 1.01608 1.07381 1.21264 0.94637 0.98192 0.98272 1.21024 0.92881 1.00598 1.00702 0.86943 0.87540 0.87605 0.73006 0.85464 0.85414 0.86394 0.86808 0.88490 0.90288 0.87555 0.85150 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.39 71.23 0.74 -0.45 16 2 C 0.50 9.71 7.68 87.65 0.67 10.39 16 3 O -0.58 -17.81 14.76 -3.06 -0.05 -17.86 16 4 N -0.66 -11.55 5.34 -303.42 -1.62 -13.17 16 5 C 0.13 3.42 6.28 38.22 0.24 3.66 16 6 C -0.13 -4.13 8.64 22.36 0.19 -3.93 16 7 C -0.11 -3.73 9.42 22.46 0.21 -3.52 16 8 C -0.06 -2.27 5.88 -20.02 -0.12 -2.39 16 9 C -0.04 -1.72 5.87 -20.09 -0.12 -1.84 16 10 C -0.22 -10.16 9.43 22.67 0.21 -9.94 16 11 C -0.11 -5.33 10.01 22.18 0.22 -5.11 16 12 C -0.18 -9.81 8.66 22.77 0.20 -9.61 16 13 C 0.08 4.43 5.52 -21.32 -0.12 4.31 16 14 C -0.50 -27.71 9.04 23.46 0.21 -27.50 16 15 H 0.08 4.03 7.89 -2.91 -0.02 4.01 16 16 C 0.03 1.77 5.15 85.25 0.44 2.21 16 17 N -0.83 -44.81 11.15 21.82 0.24 -44.57 16 18 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 22 C -0.22 -10.93 9.17 22.95 0.21 -10.72 16 23 C -0.11 -3.51 9.41 22.46 0.21 -3.30 16 24 C -0.13 -3.41 9.95 22.36 0.22 -3.19 16 25 H 0.11 0.07 7.92 -2.38 -0.02 0.06 16 26 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.43 3.66 8.66 -92.71 -0.80 2.85 16 29 H 0.13 4.06 6.38 -2.91 -0.02 4.04 16 30 H 0.13 4.33 6.18 -2.91 -0.02 4.31 16 31 H 0.12 4.66 6.18 -2.91 -0.02 4.64 16 32 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 33 H 0.10 5.48 6.43 -2.91 -0.02 5.46 16 34 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 35 H 0.11 4.97 6.18 -2.91 -0.02 4.96 16 36 H 0.13 4.28 6.19 -2.91 -0.02 4.27 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -71.46 315.34 4.55 -66.90 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.31 Total: 28.64 kcal Atomic # 6 Polarization: -64.57 SS G_CDS: 3.63 Total: -60.94 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.38 Total: -57.73 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -71.46 4.55 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239757224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.745 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds