Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21286 * 120.00008 * 2 1 4 4 N 1.34772 * 119.99909 * 180.02562 * 2 1 3 5 5 C 1.39552 * 120.00207 * 174.16223 * 4 2 1 6 6 C 1.38724 * 120.15127 * 335.19105 * 5 4 2 7 7 C 1.38142 * 120.06744 * 179.97438 * 6 5 4 8 8 C 1.38532 * 120.38611 * 0.02562 * 7 6 5 9 9 C 1.37867 * 120.30982 * 359.71492 * 8 7 6 10 10 C 1.39601 * 119.92268 * 0.56010 * 9 8 7 11 11 C 1.47815 * 120.19068 * 179.71832 * 10 9 8 12 12 C 1.40025 * 119.88864 * 309.72215 * 11 10 9 13 13 C 1.36207 * 120.11447 * 179.97438 * 12 11 10 14 14 C 1.40961 * 119.88473 * 0.30463 * 13 12 11 15 15 C 1.40978 * 120.11160 * 179.72322 * 14 13 12 16 16 H 1.08004 * 120.00313 * 25.64804 * 15 14 13 17 17 C 1.39986 * 120.00160 * 205.65752 * 15 14 13 18 18 N 1.30815 * 120.00034 * 5.68758 * 17 15 14 19 19 Si 1.86803 * 120.00026 * 185.69563 * 17 15 14 20 20 H 1.48497 * 109.47176 * 59.99767 * 19 17 15 21 21 H 1.48503 * 109.46703 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46839 * 299.99171 * 19 17 15 23 23 C 1.40966 * 119.77795 * 359.42410 * 14 13 12 24 24 C 1.36204 * 119.88157 * 0.57394 * 23 14 13 25 25 H 1.08999 * 109.47163 * 240.00482 * 1 2 3 26 26 H 1.08998 * 109.46633 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47306 * 119.99896 * 1 2 3 28 28 H 0.97007 * 119.99864 * 354.15162 * 4 2 1 29 29 H 1.08003 * 119.96812 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.80230 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.84617 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.04005 * 180.27805 * 9 8 7 33 33 H 1.07997 * 119.94300 * 359.97438 * 12 11 10 34 34 H 1.07996 * 120.05555 * 180.02562 * 13 12 11 35 35 H 0.97001 * 120.00651 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.05624 * 180.27922 * 23 14 13 37 37 H 1.07999 * 119.94427 * 179.72869 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5710 -1.1703 -0.1234 6 6 4.2183 -0.1098 -0.7404 7 6 5.5945 -0.1145 -0.8607 8 6 6.3373 -1.1750 -0.3683 9 6 5.7107 -2.2346 0.2525 10 6 4.3202 -2.2460 0.3759 11 6 3.6417 -3.3819 1.0348 12 6 3.9388 -4.6935 0.6448 13 6 3.3167 -5.7437 1.2493 14 6 2.3676 -5.5081 2.2646 15 6 1.7166 -6.5913 2.8893 16 1 2.1913 -7.5609 2.9215 17 6 0.4548 -6.4103 3.4678 18 7 -0.1690 -5.2684 3.3327 19 14 -0.3382 -7.7992 4.4329 20 1 0.5324 -8.1660 5.5786 21 1 -1.6622 -7.3569 4.9396 22 1 -0.5152 -8.9787 3.5481 23 6 2.0763 -4.1861 2.6575 24 6 2.7039 -3.1428 2.0469 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6996 -2.0051 0.0847 29 1 3.6459 0.7207 -1.1264 30 1 6.0940 0.7132 -1.3422 31 1 7.4127 -1.1699 -0.4674 32 1 6.2944 -3.0570 0.6388 33 1 4.6624 -4.8728 -0.1365 34 1 3.5468 -6.7550 0.9480 35 1 -1.0432 -5.1427 3.7338 36 1 1.3533 -4.0006 3.4380 37 1 2.4783 -2.1293 2.3441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239781112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -11.718722 kcal Electronic energy + Delta-G solvation = -20935.536832 eV Core-core repulsion = 17834.263197 eV Total energy + Delta-G solvation = -3101.273635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.61816 -39.80686 -38.77573 -35.89583 -35.55863 -32.95107 -31.81331 -31.36732 -30.39378 -29.30768 -26.91449 -24.15608 -23.57525 -22.51446 -21.65003 -21.30724 -19.27670 -18.65684 -17.91920 -17.45708 -16.97505 -16.43697 -15.82373 -15.56803 -15.52422 -15.12203 -14.89326 -14.44165 -14.32885 -13.94444 -13.83483 -13.49831 -13.40495 -13.18930 -13.06282 -12.78139 -12.67669 -12.58929 -12.23041 -11.97653 -11.63690 -11.44164 -11.25906 -11.13244 -10.76592 -9.87229 -9.47350 -9.19581 -8.71661 -8.57677 -6.36395 0.22906 0.47644 1.02819 1.19825 1.40433 1.50952 1.54474 1.60855 2.20241 2.21096 2.70914 3.02538 3.71797 3.75969 4.04956 4.14721 4.29680 4.41840 4.43999 4.50084 4.57200 4.59921 4.68004 4.71721 4.99952 5.03405 5.11664 5.19022 5.31096 5.38302 5.43786 5.54278 5.64896 5.67926 5.72196 5.97755 6.10941 6.20632 6.23474 6.34105 6.48324 6.68211 6.91333 7.00834 7.07726 8.30726 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020151 B = 0.004927 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.192536 B = 5681.138477 C = 6879.118220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.503 3.497 3 O -0.571 6.571 4 N -0.660 5.660 5 C 0.124 3.876 6 C -0.146 4.146 7 C -0.118 4.118 8 C -0.132 4.132 9 C -0.112 4.112 10 C -0.048 4.048 11 C -0.186 4.186 12 C -0.068 4.068 13 C -0.237 4.237 14 C 0.082 3.918 15 C -0.484 4.484 16 H 0.077 0.923 17 C 0.032 3.968 18 N -0.820 5.820 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.185 4.185 24 C -0.084 4.084 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.417 0.583 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.289 0.711 36 H 0.118 0.882 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 5.361 -5.554 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.294 3.706 3 O -0.451 6.451 4 N -0.304 5.304 5 C 0.029 3.971 6 C -0.167 4.167 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.130 4.130 10 C -0.050 4.050 11 C -0.188 4.188 12 C -0.086 4.086 13 C -0.256 4.256 14 C 0.080 3.920 15 C -0.513 4.513 16 H 0.095 0.905 17 C -0.183 4.183 18 N -0.446 5.446 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.205 4.205 24 C -0.103 4.103 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.256 0.744 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.146 6.222 -5.505 8.581 hybrid contribution -0.723 -1.055 0.608 1.416 sum 1.423 5.168 -4.897 7.260 Atomic orbital electron populations 1.21964 0.87555 1.06727 1.06275 1.21747 0.92528 0.82278 0.74073 1.90625 1.71589 1.32453 1.50440 1.43716 1.05513 1.10605 1.70558 1.18100 0.83360 0.96546 0.99064 1.21336 0.95926 0.98592 1.00806 1.21308 0.92749 0.99282 1.00288 1.21312 1.01066 0.93513 0.99111 1.21313 0.92451 0.99480 0.99765 1.18788 0.93535 0.94047 0.98678 1.18226 1.04837 0.91759 1.03933 1.20566 0.98116 0.91619 0.98323 1.20895 1.05442 0.97802 1.01489 1.18059 0.90550 0.93556 0.89877 1.19874 1.02157 0.97338 1.31958 0.90520 1.26762 0.97289 0.99258 0.94948 1.69783 1.13868 1.25454 1.35514 0.85195 0.77614 0.77973 0.78634 1.18678 1.19149 1.18496 1.21291 1.03612 0.92448 1.03115 1.20565 0.96199 0.96994 0.96500 0.88085 0.87662 0.86950 0.74448 0.85036 0.83583 0.83179 0.85237 0.86788 0.88134 0.90047 0.86399 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 10.32 71.24 0.74 -2.77 16 2 C 0.50 15.65 7.74 87.66 0.68 16.33 16 3 O -0.57 -21.22 14.26 -3.05 -0.04 -21.26 16 4 N -0.66 -22.05 4.33 -302.83 -1.31 -23.36 16 5 C 0.12 4.49 6.35 38.52 0.24 4.73 16 6 C -0.15 -4.91 8.71 22.36 0.19 -4.71 16 7 C -0.12 -3.28 10.03 22.32 0.22 -3.06 16 8 C -0.13 -3.53 10.03 22.25 0.22 -3.30 16 9 C -0.11 -3.57 9.51 22.51 0.21 -3.35 16 10 C -0.05 -1.79 5.48 -19.92 -0.11 -1.90 16 11 C -0.19 -7.76 4.98 -19.88 -0.10 -7.86 16 12 C -0.07 -2.85 9.44 22.23 0.21 -2.64 16 13 C -0.24 -11.00 9.73 22.46 0.22 -10.78 16 14 C 0.08 4.20 5.61 -21.27 -0.12 4.08 16 15 C -0.48 -24.73 9.06 23.37 0.21 -24.51 16 16 H 0.08 3.77 7.85 -2.91 -0.02 3.74 16 17 C 0.03 1.52 5.35 85.27 0.46 1.98 16 18 N -0.82 -39.86 10.39 21.83 0.23 -39.64 16 19 Si 0.98 36.13 29.56 68.60 2.03 38.16 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 23 C -0.19 -9.25 8.64 22.46 0.19 -9.06 16 24 C -0.08 -3.76 8.00 22.23 0.18 -3.58 16 25 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.10 1.96 8.12 -2.39 -0.02 1.94 16 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.42 13.92 7.07 -92.70 -0.66 13.26 16 29 H 0.13 4.56 5.79 -2.91 -0.02 4.55 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.13 3.85 8.04 -2.91 -0.02 3.83 16 33 H 0.11 4.17 8.04 -2.91 -0.02 4.14 16 34 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 36 H 0.12 6.20 5.77 -2.91 -0.02 6.19 16 37 H 0.09 3.91 7.60 -2.91 -0.02 3.88 16 Total: -1.00 -59.75 315.90 5.00 -54.75 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: 0.44 Total: 41.76 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 3.66 Total: -50.41 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -1.09 Total: -63.00 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -59.75 5.00 -54.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239781112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.035 kcal (2) G-P(sol) polarization free energy of solvation -59.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds