Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30647 * 125.96050 * 2 1 4 4 N 1.40004 * 108.55314 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.88035 * 180.02562 * 4 3 2 6 6 C 1.34756 * 108.23487 * 0.02562 * 4 3 2 7 7 C 1.50702 * 126.19617 * 179.97438 * 6 4 3 8 8 C 1.36529 * 107.60795 * 359.72574 * 6 4 3 9 9 C 1.48351 * 126.24005 * 180.28124 * 8 6 4 10 10 C 1.39812 * 119.53431 * 64.92749 * 9 8 6 11 11 C 1.37695 * 121.17620 * 179.71389 * 10 9 8 12 12 C 1.39602 * 120.17840 * 0.55424 * 11 10 9 13 13 C 1.43200 * 120.45974 * 179.70255 * 12 11 10 14 14 N 7.77822 * 81.01723 * 178.79567 * 2 1 3 15 15 C 1.46560 * 119.08104 * 359.72951 * 12 11 10 16 16 C 1.40855 * 120.55281 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99787 * 24.50360 * 16 15 12 18 18 C 1.40226 * 119.99982 * 204.50072 * 16 15 12 19 19 N 1.30667 * 119.99653 * 17.44700 * 18 16 15 20 20 Si 1.86797 * 119.99968 * 197.44513 * 18 16 15 21 21 H 1.48498 * 109.47402 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47292 * 120.00293 * 20 18 16 23 23 H 1.48502 * 109.47030 * 240.00210 * 20 18 16 24 24 C 1.38602 * 119.53643 * 245.19876 * 9 8 6 25 25 H 1.08999 * 109.47361 * 90.02115 * 1 2 3 26 26 H 1.09002 * 109.46912 * 210.02510 * 1 2 3 27 27 H 1.09000 * 109.47073 * 330.01880 * 1 2 3 28 28 H 1.08997 * 109.47342 * 89.98013 * 5 4 3 29 29 H 1.09003 * 109.46767 * 209.97785 * 5 4 3 30 30 H 1.09000 * 109.47256 * 329.97438 * 5 4 3 31 31 H 1.08996 * 109.47453 * 90.01962 * 7 6 4 32 32 H 1.09004 * 109.47520 * 210.02157 * 7 6 4 33 33 H 1.09004 * 109.47124 * 330.01875 * 7 6 4 34 34 H 1.07997 * 119.41093 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.91400 * 180.28417 * 11 10 9 36 36 H 0.97004 * 119.99872 * 184.51633 * 19 18 16 37 37 H 1.08005 * 120.12958 * 0.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0575 0.0000 4 7 3.6101 0.6386 -0.0006 5 6 4.7845 1.5144 -0.0003 6 6 3.6296 -0.7088 -0.0015 7 6 4.8585 -1.5811 -0.0030 8 6 2.3344 -1.1405 0.0047 9 6 1.8808 -2.5530 0.0120 10 6 2.1647 -3.3623 1.1161 11 6 1.7548 -4.6761 1.1611 12 6 1.0522 -5.2291 0.0889 13 6 0.6287 -6.5965 0.1266 14 7 0.2925 -7.6811 0.1615 15 6 0.7547 -4.3910 -1.0760 16 6 0.0482 -4.9173 -2.1750 17 1 -0.6087 -5.7638 -2.0394 18 6 0.1978 -4.3422 -3.4451 19 7 1.2172 -3.5635 -3.6937 20 14 -1.0601 -4.6895 -4.7817 21 1 -2.1100 -5.5952 -4.2501 22 1 -1.6816 -3.4140 -5.2200 23 1 -0.3885 -5.3358 -5.9377 24 6 1.1865 -3.0533 -1.0783 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 5.0758 1.7312 1.0274 29 1 5.6077 1.0183 -0.5143 30 1 4.5437 2.4452 -0.5138 31 1 5.1553 -1.7924 1.0243 32 1 4.6394 -2.5167 -0.5176 33 1 5.6697 -1.0652 -0.5167 34 1 2.7115 -2.9485 1.9504 35 1 1.9813 -5.2816 2.0262 36 1 1.2863 -3.1136 -4.5503 37 1 0.9784 -2.4179 -1.9265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240144265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = 105.432586 kcal Electronic energy + Delta-G solvation = -21026.831406 eV Core-core repulsion = 17962.930583 eV Total energy + Delta-G solvation = -3063.900822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87528 -37.57297 -35.10697 -34.15926 -33.76784 -32.06088 -29.87708 -29.69503 -29.05957 -26.37716 -25.67002 -25.08471 -22.06682 -21.08416 -19.37270 -18.95932 -17.60427 -16.96719 -16.12898 -15.42343 -15.23995 -14.33042 -13.92584 -13.53832 -13.28576 -13.23241 -13.06482 -12.85338 -12.78196 -12.60011 -12.33595 -12.20798 -11.85910 -11.69992 -11.66969 -11.51060 -11.47143 -11.25420 -11.13709 -10.83741 -10.55654 -10.19441 -9.83511 -9.72150 -9.42041 -8.67039 -8.01593 -7.69119 -7.24698 -7.03914 -4.64997 2.04541 2.29603 2.70596 2.80829 2.96621 3.02828 3.08135 3.24563 3.75243 3.97910 4.18229 4.51824 4.72586 5.01475 5.16361 5.29260 5.32813 5.44506 5.45999 5.52095 5.75427 5.77687 5.89249 6.05732 6.13733 6.17255 6.32404 6.39499 6.48218 6.57792 6.76906 6.95178 7.02485 7.10152 7.31051 7.38645 7.60393 7.76551 7.88737 7.97209 8.15502 8.31167 8.51174 8.63114 8.89106 9.81993 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.006049 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.490262 B = 4627.752373 C = 5621.248828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.090 3.910 3 N -0.312 5.312 4 N -0.382 5.382 5 C 0.107 3.893 6 C 0.086 3.914 7 C -0.086 4.086 8 C -0.172 4.172 9 C 0.026 3.974 10 C -0.232 4.232 11 C -0.031 4.031 12 C -0.191 4.191 13 C 0.301 3.699 14 N -0.515 5.515 15 C 0.152 3.848 16 C -0.432 4.432 17 H 0.084 0.916 18 C 0.078 3.922 19 N -0.763 5.763 20 Si 0.909 3.091 21 H -0.256 1.256 22 H -0.267 1.267 23 H -0.271 1.271 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.288 0.712 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 10.305 2.649 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 N -0.135 5.135 4 N -0.165 5.165 5 C -0.035 4.035 6 C -0.040 4.040 7 C -0.144 4.144 8 C -0.183 4.183 9 C 0.024 3.976 10 C -0.252 4.252 11 C -0.051 4.051 12 C -0.197 4.197 13 C -0.008 4.008 14 N -0.195 5.195 15 C 0.147 3.853 16 C -0.460 4.460 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.386 5.386 20 Si 0.732 3.268 21 H -0.179 1.179 22 H -0.191 1.191 23 H -0.196 1.196 24 C -0.163 4.163 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.562 10.091 2.487 11.788 hybrid contribution -0.159 -0.376 -0.723 0.830 sum 5.403 9.715 1.764 11.256 Atomic orbital electron populations 1.20156 0.86768 1.02920 1.02999 1.22386 0.96712 0.89972 0.98499 1.77057 0.86190 1.22799 1.27422 1.48018 1.05242 1.04084 1.59149 1.21691 0.84565 0.94563 1.02680 1.21024 0.96961 0.83952 1.02087 1.20399 0.92132 0.99009 1.02855 1.18794 0.90450 0.94122 1.14911 1.17768 0.97105 0.88687 0.94023 1.20089 1.11617 0.94214 0.99235 1.20349 0.95090 0.94471 0.95230 1.16979 1.15573 0.85984 1.01139 1.25851 0.91297 0.92643 0.90999 1.81012 1.13973 1.13154 1.11313 1.18362 0.87481 0.90129 0.89352 1.19769 1.21278 1.13248 0.91676 0.89764 1.26039 0.94887 0.93415 1.00096 1.69743 1.23805 1.20506 1.24542 0.86216 0.81073 0.79765 0.79761 1.17937 1.19145 1.19574 1.21303 1.02826 0.94682 0.97446 0.90586 0.89895 0.91687 0.91372 0.89920 0.89807 0.90630 0.88902 0.91990 0.88858 0.88495 0.90064 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.27 36.00 0.37 -0.72 16 2 C 0.09 1.65 7.25 -82.09 -0.60 1.05 16 3 N -0.31 -5.59 12.54 33.85 0.42 -5.16 16 4 N -0.38 -5.97 4.00 -63.63 -0.25 -6.22 16 5 C 0.11 1.08 11.26 59.84 0.67 1.76 16 6 C 0.09 1.42 6.97 -81.92 -0.57 0.85 16 7 C -0.09 -1.13 9.91 36.01 0.36 -0.77 16 8 C -0.17 -3.25 5.44 -105.34 -0.57 -3.83 16 9 C 0.03 0.54 4.93 -105.01 -0.52 0.02 16 10 C -0.23 -4.52 9.69 -39.19 -0.38 -4.90 16 11 C -0.03 -0.62 9.74 -39.27 -0.38 -1.00 16 12 C -0.19 -4.35 5.95 -104.11 -0.62 -4.97 16 13 C 0.30 7.11 14.28 -22.47 -0.32 6.79 16 14 N -0.52 -12.52 18.54 41.84 0.78 -11.74 16 15 C 0.15 3.65 5.74 -104.67 -0.60 3.05 16 16 C -0.43 -10.56 8.58 -37.85 -0.32 -10.89 16 17 H 0.08 2.11 7.37 -52.48 -0.39 1.72 16 18 C 0.08 1.78 5.16 -17.30 -0.09 1.69 16 19 N -0.76 -17.63 10.94 55.56 0.61 -17.03 16 20 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.14 -3.24 8.40 -38.57 -0.32 -3.57 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.30 7.98 -51.93 -0.41 0.89 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.66 7.03 -51.93 -0.37 0.29 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 33 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 37 H 0.13 2.99 6.17 -52.48 -0.32 2.67 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -28.14 329.17 -6.78 -34.92 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.36 Total: 3.32 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.90 Total: -15.43 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 1.55 Total: -40.15 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.14 -6.78 -34.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240144265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.355 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds