Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30550 * 125.93946 * 2 1 4 4 N 1.39955 * 108.84885 * 179.97438 * 3 2 1 5 5 C 1.46503 * 125.81823 * 179.97438 * 4 3 2 6 6 C 1.34699 * 108.36900 * 359.73122 * 4 3 2 7 7 C 1.50697 * 126.30582 * 180.26454 * 6 4 3 8 8 C 1.37856 * 107.39156 * 0.42586 * 6 4 3 9 9 C 1.48029 * 126.36323 * 179.84182 * 8 6 4 10 10 C 1.39989 * 119.49756 * 294.70798 * 9 8 6 11 11 C 1.35976 * 121.19312 * 179.97438 * 10 9 8 12 12 C 1.41057 * 120.11149 * 0.05173 * 11 10 9 13 13 C 1.40421 * 120.48951 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99779 * 154.62968 * 13 12 11 15 15 C 1.40246 * 120.00046 * 334.62983 * 13 12 11 16 16 N 1.30669 * 120.00262 * 334.60789 * 15 13 12 17 17 Si 1.86802 * 120.00209 * 154.60941 * 15 13 12 18 18 H 1.48498 * 109.47374 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47043 * 300.00381 * 17 15 13 20 20 H 1.48499 * 109.47100 * 59.99782 * 17 15 13 21 21 C 1.46648 * 119.01888 * 0.24659 * 12 11 10 22 22 C 1.43208 * 120.56619 * 179.70498 * 21 12 11 23 23 N 6.49063 * 71.60551 * 149.68220 * 2 1 3 24 24 C 1.39075 * 118.86875 * 359.42714 * 21 12 11 25 25 H 1.09004 * 109.47176 * 270.01887 * 1 2 3 26 26 H 1.08994 * 109.47568 * 30.02368 * 1 2 3 27 27 H 1.09008 * 109.47229 * 150.02928 * 1 2 3 28 28 H 1.09007 * 109.46642 * 89.97412 * 5 4 3 29 29 H 1.08996 * 109.47577 * 209.97737 * 5 4 3 30 30 H 1.08998 * 109.46800 * 329.98394 * 5 4 3 31 31 H 1.08997 * 109.47265 * 270.19067 * 7 6 4 32 32 H 1.09001 * 109.47133 * 30.19162 * 7 6 4 33 33 H 1.08997 * 109.47189 * 150.18710 * 7 6 4 34 34 H 1.08006 * 119.40373 * 359.97438 * 10 9 8 35 35 H 1.08005 * 119.94588 * 180.02562 * 11 10 9 36 36 H 0.96998 * 119.99675 * 354.18773 * 16 15 13 37 37 H 1.08001 * 120.09997 * 180.28098 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0570 0.0000 4 7 3.6109 0.6457 0.0006 5 6 4.7796 1.5292 0.0003 6 6 3.6410 -0.7010 0.0070 7 6 4.8750 -1.5659 0.0154 8 6 2.3350 -1.1423 0.0006 9 6 1.8852 -2.5526 0.0009 10 6 2.1670 -3.3662 -1.1029 11 6 1.7706 -4.6664 -1.1388 12 6 1.0608 -5.2201 -0.0529 13 6 0.6472 -6.5617 -0.0819 14 1 0.4871 -7.0975 0.8421 15 6 0.4421 -7.2059 -1.3106 16 7 0.1442 -6.5064 -2.3734 17 14 0.5947 -9.0640 -1.4281 18 1 0.3320 -9.4949 -2.8247 19 1 1.9661 -9.4740 -1.0326 20 1 -0.3933 -9.7002 -0.5202 21 6 0.7560 -4.3723 1.1042 22 6 0.0318 -4.8986 2.2220 23 7 -0.5412 -5.3167 3.1090 24 6 1.1873 -3.0502 1.1001 25 1 -0.3634 0.0003 1.0277 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8903 -0.5134 28 1 5.0688 1.7494 1.0279 29 1 5.6064 1.0380 -0.5127 30 1 4.5328 2.4577 -0.5145 31 1 5.1782 -1.7764 -1.0102 32 1 5.6805 -1.0446 0.5327 33 1 4.6589 -2.5022 0.5299 34 1 2.7091 -2.9537 -1.9410 35 1 1.9993 -5.2761 -2.0005 36 1 -0.0180 -5.5532 -2.2967 37 1 0.9777 -2.4094 1.9438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240144294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = 97.702491 kcal Electronic energy + Delta-G solvation = -20808.218376 eV Core-core repulsion = 17743.982351 eV Total energy + Delta-G solvation = -3064.236024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84044 -37.85261 -35.19745 -34.58167 -33.76137 -31.87094 -30.00213 -29.67360 -29.13638 -26.94852 -25.60086 -24.40542 -22.34785 -21.33685 -19.53615 -18.99422 -18.34282 -16.95570 -15.80421 -15.48678 -14.94154 -14.58181 -14.11275 -13.76853 -13.59015 -13.28175 -13.05744 -12.99689 -12.80466 -12.50271 -12.42847 -12.32932 -12.07688 -11.89211 -11.74520 -11.59426 -11.55801 -11.34669 -11.01338 -10.74792 -10.53507 -10.25988 -9.96772 -9.71354 -9.29098 -8.73491 -8.10795 -7.90285 -7.61217 -7.36066 -4.77583 2.10999 2.15646 2.54431 2.75140 3.02695 3.05294 3.22343 3.25780 3.78747 3.88376 4.08509 4.41300 4.65956 4.95639 5.11719 5.17704 5.29265 5.30583 5.37280 5.39264 5.66142 5.70054 5.91284 5.93679 5.99132 6.05063 6.17031 6.32299 6.35839 6.49627 6.72083 6.75151 7.04204 7.07498 7.28587 7.36547 7.49059 7.56972 7.68105 7.82214 7.94717 8.12493 8.35707 8.47045 8.79076 9.65906 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.004672 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.162567 B = 5991.866635 C = 6490.392266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.081 3.919 3 N -0.315 5.315 4 N -0.380 5.380 5 C 0.107 3.893 6 C 0.070 3.930 7 C -0.083 4.083 8 C -0.149 4.149 9 C -0.163 4.163 10 C -0.036 4.036 11 C -0.219 4.219 12 C 0.132 3.868 13 C -0.477 4.477 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.763 5.763 17 Si 1.065 2.935 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.192 4.192 22 C 0.300 3.700 23 N -0.510 5.510 24 C 0.005 3.995 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.307 0.693 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 8.615 -1.681 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 N -0.137 5.137 4 N -0.163 5.163 5 C -0.035 4.035 6 C -0.056 4.056 7 C -0.142 4.142 8 C -0.160 4.160 9 C -0.165 4.165 10 C -0.055 4.055 11 C -0.238 4.238 12 C 0.127 3.873 13 C -0.503 4.503 14 H 0.102 0.898 15 C -0.188 4.188 16 N -0.383 5.383 17 Si 0.887 3.113 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.198 4.198 22 C -0.010 4.010 23 N -0.189 5.189 24 C -0.016 4.016 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.619 8.122 -1.435 11.228 hybrid contribution 0.417 0.822 0.719 1.169 sum 8.036 8.944 -0.716 12.045 Atomic orbital electron populations 1.20132 0.86929 1.03069 1.02633 1.22476 0.96631 0.90334 0.98951 1.76968 0.86211 1.23083 1.27470 1.47967 1.05212 1.04164 1.58942 1.21691 0.84695 0.94423 1.02714 1.21475 0.97139 0.83875 1.03118 1.20347 0.92073 0.98933 1.02840 1.18825 0.89665 0.93554 1.13991 1.16943 1.12356 0.90490 0.96738 1.20375 0.96418 0.93297 0.95419 1.20746 1.06400 0.95677 1.00941 1.18440 0.88174 0.91303 0.89408 1.20788 1.36679 0.96137 0.96704 0.89829 1.27299 0.91376 1.09049 0.91037 1.70409 1.22903 1.13065 1.31962 0.83620 0.78558 0.71401 0.77737 1.19363 1.19434 1.19696 1.16694 1.14089 0.94094 0.94929 1.25764 0.91650 0.91679 0.91874 1.81012 1.14578 1.10040 1.13293 1.20540 0.93338 0.92206 0.95553 0.90989 0.91668 0.89867 0.91412 0.89957 0.89774 0.90738 0.92043 0.89140 0.88993 0.87000 0.87900 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.27 36.00 0.37 -0.66 16 2 C 0.08 1.42 7.26 -82.06 -0.60 0.82 16 3 N -0.31 -5.43 12.51 33.87 0.42 -5.01 16 4 N -0.38 -5.67 4.00 -63.29 -0.25 -5.93 16 5 C 0.11 1.02 11.07 59.85 0.66 1.69 16 6 C 0.07 1.10 7.01 -81.48 -0.57 0.52 16 7 C -0.08 -1.02 9.71 36.00 0.35 -0.67 16 8 C -0.15 -2.67 5.48 -104.94 -0.58 -3.24 16 9 C -0.16 -3.13 5.03 -104.80 -0.53 -3.66 16 10 C -0.04 -0.70 9.62 -39.74 -0.38 -1.08 16 11 C -0.22 -4.74 7.88 -39.33 -0.31 -5.05 16 12 C 0.13 3.10 5.46 -104.61 -0.57 2.53 16 13 C -0.48 -11.48 8.48 -38.01 -0.32 -11.80 16 14 H 0.08 2.07 7.45 -52.48 -0.39 1.68 16 15 C 0.04 0.88 4.94 -17.29 -0.09 0.79 16 16 N -0.76 -17.87 12.31 55.56 0.68 -17.18 16 17 Si 1.06 19.57 30.01 -169.99 -5.10 14.47 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 C -0.19 -4.33 5.93 -104.27 -0.62 -4.95 16 22 C 0.30 7.05 14.30 -22.48 -0.32 6.73 16 23 N -0.51 -12.37 18.54 41.83 0.78 -11.59 16 24 C 0.00 0.10 9.47 -38.84 -0.37 -0.27 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.28 8.00 -51.92 -0.42 0.86 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.59 7.73 -51.93 -0.40 0.19 16 33 H 0.09 1.21 7.96 -51.93 -0.41 0.80 16 34 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.11 2.48 6.49 -52.48 -0.34 2.14 16 36 H 0.31 7.30 6.68 -40.82 -0.27 7.03 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -27.72 329.39 -6.76 -34.48 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.39 Total: 4.11 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.87 Total: -18.31 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 1.63 Total: -39.71 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.10 Total: 14.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.72 -6.76 -34.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240144294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.178 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds