Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48503 * 109.47467 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47199 * 299.99942 * 3 2 1 6 6 H 1.48493 * 109.47351 * 59.99972 * 3 2 1 7 7 C 1.40146 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.41095 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.33642 * 119.13336 * 180.02562 * 9 7 2 11 11 C 1.31584 * 120.82747 * 180.02562 * 10 9 7 12 12 C 1.40435 * 119.09635 * 359.97438 * 11 10 9 13 13 C 1.47936 * 120.79150 * 180.02562 * 12 11 10 14 14 C 1.39674 * 120.24105 * 359.97438 * 13 12 11 15 15 C 1.37675 * 119.70462 * 180.12337 * 14 13 12 16 16 C 1.38946 * 120.59045 * 359.97438 * 15 14 13 17 17 C 1.38046 * 119.96009 * 359.81884 * 16 15 14 18 18 C 1.38385 * 119.98917 * 0.29427 * 17 16 15 19 19 C 1.50740 * 121.64150 * 180.58028 * 17 16 15 20 20 C 1.52875 * 109.98535 * 342.93799 * 19 17 16 21 21 N 1.47162 * 108.51992 * 50.39001 * 20 19 17 22 22 C 1.46615 * 110.24786 * 288.70258 * 21 20 19 23 23 C 1.40428 * 118.41451 * 0.27816 * 12 11 10 24 24 N 1.31593 * 119.09648 * 359.46063 * 23 12 11 25 25 H 0.96999 * 120.00474 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.45294 * 180.02562 * 11 10 9 27 27 H 1.07997 * 120.14795 * 0.10836 * 14 13 12 28 28 H 1.08005 * 119.70289 * 179.97438 * 15 14 13 29 29 H 1.07994 * 119.87957 * 179.51300 * 18 17 16 30 30 H 1.09000 * 109.38577 * 103.09200 * 19 17 16 31 31 H 1.09005 * 109.38807 * 222.77876 * 19 17 16 32 32 H 1.09002 * 109.62335 * 290.68029 * 20 19 17 33 33 H 1.09000 * 109.79003 * 170.19493 * 20 19 17 34 34 H 1.00895 * 110.99967 * 52.12250 * 21 20 19 35 35 H 1.09003 * 109.29932 * 292.41327 * 22 21 20 36 36 H 1.08994 * 109.30325 * 173.03484 * 22 21 20 37 37 H 1.07999 * 120.45233 * 179.70199 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3465 -0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8818 2.3964 1.2124 7 6 2.0073 -1.2137 -0.0005 8 1 3.0873 -1.2137 -0.0010 9 6 1.3018 -2.4356 -0.0005 10 7 1.9875 -3.5827 -0.0005 11 6 1.3637 -4.7413 -0.0010 12 6 -0.0406 -4.7607 -0.0010 13 6 -0.7802 -6.0419 -0.0010 14 6 -0.0869 -7.2544 -0.0016 15 6 -0.7864 -8.4402 -0.0041 16 6 -2.1758 -8.4416 -0.0056 17 6 -2.8664 -7.2463 -0.0008 18 6 -2.1746 -6.0478 -0.0006 19 6 -4.3731 -7.2036 0.0107 20 6 -4.9376 -8.5618 -0.4059 21 7 -4.2844 -9.6063 0.3991 22 6 -2.8882 -9.7693 -0.0177 23 6 -0.7258 -3.5350 -0.0065 24 7 -0.0345 -2.4153 -0.0006 25 1 -0.4851 0.8400 0.0004 26 1 1.9238 -5.6646 -0.0006 27 1 0.9931 -7.2617 -0.0002 28 1 -0.2502 -9.3778 -0.0050 29 1 -2.7166 -5.1137 -0.0048 30 1 -4.7205 -6.9601 1.0148 31 1 -4.7188 -6.4392 -0.6853 32 1 -4.7348 -8.7338 -1.4630 33 1 -6.0132 -8.5838 -0.2311 34 1 -4.3455 -9.3950 1.3838 35 1 -2.8591 -10.1847 -1.0250 36 1 -2.3858 -10.4539 0.6656 37 1 -1.8055 -3.5116 -0.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240455738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = 42.087798 kcal Electronic energy + Delta-G solvation = -20479.756469 eV Core-core repulsion = 17413.108810 eV Total energy + Delta-G solvation = -3066.647659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26717 -40.50735 -37.58805 -35.80040 -34.06045 -33.52885 -33.19094 -30.75385 -29.98202 -28.00322 -25.30614 -25.06875 -24.03719 -23.37927 -22.51433 -20.73185 -19.83585 -18.10598 -17.53709 -17.17000 -16.78652 -16.17898 -15.95621 -15.76051 -15.37737 -15.09940 -14.71953 -14.51346 -14.45327 -14.26318 -13.76900 -13.34598 -13.17991 -13.03754 -12.89264 -12.77915 -12.65773 -12.55329 -12.20644 -11.95249 -11.53236 -11.41473 -11.24349 -11.09361 -10.43528 -9.61307 -9.45083 -9.36933 -8.91423 -8.54935 -6.77823 -0.05707 0.52897 0.94799 1.07349 1.37464 1.50491 1.55625 2.15045 2.60162 2.99243 3.40097 3.75283 3.81762 3.85133 3.89305 3.96353 4.04762 4.09258 4.24149 4.30761 4.35177 4.48569 4.59548 4.67939 4.70366 4.86485 4.92852 4.97349 4.99693 5.10074 5.18039 5.22535 5.32349 5.48499 5.65307 5.77493 5.88543 6.00761 6.04440 6.18384 6.39968 6.45059 6.49136 7.06149 8.09358 8.24194 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039264 B = 0.003469 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.945879 B = 8069.105837 C = 8734.696547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.019 3.981 3 Si 1.005 2.995 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.095 0.905 9 C 0.350 3.650 10 N -0.618 5.618 11 C 0.173 3.827 12 C -0.315 4.315 13 C 0.004 3.996 14 C -0.150 4.150 15 C -0.100 4.100 16 C -0.150 4.150 17 C -0.077 4.077 18 C -0.152 4.152 19 C -0.116 4.116 20 C 0.060 3.940 21 N -0.680 5.680 22 C 0.104 3.896 23 C 0.161 3.839 24 N -0.538 5.538 25 H 0.289 0.711 26 H 0.165 0.835 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -12.893 0.273 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.206 4.206 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.113 0.887 9 C 0.116 3.884 10 N -0.337 5.337 11 C 0.000 4.000 12 C -0.325 4.325 13 C 0.002 3.998 14 C -0.168 4.168 15 C -0.119 4.119 16 C -0.152 4.152 17 C -0.077 4.077 18 C -0.170 4.170 19 C -0.154 4.154 20 C -0.070 4.070 21 N -0.308 5.308 22 C -0.026 4.026 23 C -0.014 4.014 24 N -0.255 5.255 25 H 0.100 0.900 26 H 0.182 0.818 27 H 0.144 0.856 28 H 0.165 0.835 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.831 -12.294 -0.113 14.577 hybrid contribution 0.445 1.035 0.330 1.174 sum -7.386 -11.259 0.217 13.467 Atomic orbital electron populations 1.70176 1.09137 1.30236 1.26064 1.27207 0.95974 1.04955 0.92417 0.84831 0.79132 0.74407 0.79372 1.17702 1.18371 1.18356 1.19857 0.95301 0.88929 1.40911 0.88731 1.20399 0.86615 0.91896 0.89519 1.68666 1.41395 0.99131 1.24530 1.23261 0.91402 0.96120 0.89251 1.20054 0.95264 0.94281 1.22875 1.18619 0.93021 0.91533 0.96577 1.21277 1.00207 0.91813 1.03507 1.21205 0.93676 0.98041 0.98947 1.20721 0.94377 0.96485 1.03596 1.19691 0.96413 0.92039 0.99546 1.21182 0.93215 0.98062 1.04543 1.21227 0.90176 1.00957 1.03049 1.22083 0.99518 0.87140 0.98216 1.61056 1.14105 1.46437 1.09157 1.20935 0.87308 0.91625 1.02697 1.23465 0.99993 0.88236 0.89740 1.69316 1.08226 1.28302 1.19677 0.90024 0.81801 0.85621 0.83520 0.86931 0.89995 0.90114 0.91057 0.88339 0.83583 0.89519 0.88414 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.55 11.40 21.85 0.25 -38.30 16 2 C 0.02 0.96 5.50 85.33 0.47 1.43 16 3 Si 1.00 36.89 29.56 68.60 2.03 38.91 16 4 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 5 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.42 -23.20 9.35 23.43 0.22 -22.98 16 8 H 0.09 5.07 7.85 -2.91 -0.02 5.04 16 9 C 0.35 20.37 7.35 134.91 0.99 21.37 16 10 N -0.62 -33.68 10.34 -193.16 -2.00 -35.68 16 11 C 0.17 8.07 10.70 85.27 0.91 8.98 16 12 C -0.32 -14.25 5.94 -19.64 -0.12 -14.36 16 13 C 0.00 0.15 5.88 -20.07 -0.12 0.04 16 14 C -0.15 -4.70 9.45 22.48 0.21 -4.48 16 15 C -0.10 -2.54 9.62 22.31 0.21 -2.33 16 16 C -0.15 -3.66 5.81 -19.75 -0.11 -3.77 16 17 C -0.08 -2.08 5.77 -19.86 -0.11 -2.20 16 18 C -0.15 -5.07 9.06 22.59 0.20 -4.87 16 19 C -0.12 -2.37 5.81 29.82 0.17 -2.19 16 20 C 0.06 1.00 6.62 86.21 0.57 1.57 16 21 N -0.68 -11.63 6.96 -518.25 -3.61 -15.23 16 22 C 0.10 1.87 6.33 85.61 0.54 2.42 16 23 C 0.16 7.94 10.70 85.26 0.91 8.86 16 24 N -0.54 -30.68 7.83 -193.17 -1.51 -32.20 16 25 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 26 H 0.17 6.29 6.35 -2.91 -0.02 6.27 16 27 H 0.13 3.64 6.31 -2.91 -0.02 3.63 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.11 3.75 6.28 -2.91 -0.02 3.74 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.35 5.48 8.74 -89.70 -0.78 4.70 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.45 8.13 -2.39 -0.02 1.43 16 37 H 0.15 6.46 6.34 -2.91 -0.02 6.44 16 Total: -1.00 -66.79 308.26 0.45 -66.33 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.33 Total: 28.70 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.96 Total: -12.53 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -6.87 Total: -121.41 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.91 kcal Total: -66.79 0.45 -66.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240455738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.423 kcal (2) G-P(sol) polarization free energy of solvation -66.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds