Wall clock time and date at job start Tue Mar 31 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38873 * 119.24650 * 2 1 4 4 C 1.36893 * 119.79509 * 180.28255 * 3 2 1 5 5 C 1.41120 * 118.39466 * 359.43504 * 4 3 2 6 6 C 1.40893 * 120.71744 * 180.25327 * 5 4 3 7 7 H 1.08000 * 119.99859 * 143.69212 * 6 5 4 8 8 C 1.40078 * 119.99815 * 323.68547 * 6 5 4 9 9 N 1.30771 * 119.99820 * 166.80430 * 8 6 5 10 10 Si 1.86802 * 120.00209 * 346.81045 * 8 6 5 11 11 H 1.48502 * 109.47228 * 95.51968 * 10 8 6 12 12 H 1.48497 * 109.47152 * 215.51886 * 10 8 6 13 13 H 1.48498 * 109.47116 * 335.52027 * 10 8 6 14 14 C 1.41861 * 118.56226 * 0.27659 * 5 4 3 15 15 C 1.47838 * 119.98889 * 179.97438 * 14 5 4 16 16 C 1.40033 * 120.94546 * 315.24617 * 15 14 5 17 17 N 1.32142 * 118.90916 * 179.78679 * 16 15 14 18 18 C 1.31880 * 120.97381 * 0.48029 * 17 16 15 19 19 C 1.50700 * 118.93621 * 179.74953 * 18 17 16 20 20 C 1.52998 * 117.50201 * 8.64106 * 19 18 17 21 21 C 1.52997 * 60.00160 * 252.50950 * 20 19 18 22 22 N 1.31871 * 122.11926 * 359.77405 * 18 17 16 23 23 C 1.32134 * 120.97661 * 359.97438 * 22 18 17 24 24 N 1.31753 * 119.25142 * 179.71015 * 2 1 3 25 25 H 1.08997 * 109.46954 * 270.28966 * 1 2 3 26 26 H 1.08992 * 109.47018 * 30.29449 * 1 2 3 27 27 H 1.09003 * 109.46550 * 150.29227 * 1 2 3 28 28 H 1.07999 * 120.10081 * 0.02562 * 3 2 1 29 29 H 1.07995 * 120.79967 * 179.70603 * 4 3 2 30 30 H 0.96996 * 120.00146 * 179.97438 * 9 8 6 31 31 H 1.07994 * 120.55229 * 0.02562 * 16 15 14 32 32 H 1.09001 * 115.54650 * 154.35692 * 19 18 17 33 33 H 1.09004 * 117.49510 * 0.02562 * 20 19 18 34 34 H 1.09006 * 117.49544 * 145.01857 * 20 19 18 35 35 H 1.08997 * 117.50051 * 252.51062 * 21 20 19 36 36 H 1.09001 * 117.49789 * 107.48836 * 21 20 19 37 37 H 1.07998 * 120.54254 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2248 -0.0059 5 6 4.2373 -0.0101 0.0005 6 6 5.6456 -0.0537 0.0002 7 1 6.1622 -0.8208 0.5580 8 6 6.3756 0.8979 -0.7235 9 7 7.6620 1.0244 -0.5252 10 14 5.5116 1.9863 -1.9719 11 1 5.1535 3.2800 -1.3369 12 1 6.4163 2.2336 -3.1231 13 1 4.2780 1.3104 -2.4480 14 6 3.4752 -1.2066 0.0066 15 6 4.1583 -2.5177 0.0127 16 6 5.2471 -2.7664 -0.8321 17 7 5.8304 -3.9514 -0.7904 18 6 5.3954 -4.8937 0.0232 19 6 6.0914 -6.2304 0.0291 20 6 7.3928 -6.3528 -0.7660 21 6 6.1160 -7.0199 -1.2813 22 7 4.3707 -4.7042 0.8314 23 6 3.7312 -3.5482 0.8592 24 7 2.1508 -1.1495 0.0058 25 1 -0.3633 0.0052 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3632 -0.8926 -0.5093 28 1 1.6349 2.1408 0.0004 29 1 4.0984 2.1577 -0.0107 30 1 8.1676 1.6830 -1.0266 31 1 5.6067 -2.0011 -1.5038 32 1 6.0127 -6.7972 0.9568 33 1 7.7458 -5.4663 -1.2931 34 1 8.1708 -7.0001 -0.3613 35 1 6.0539 -8.1061 -1.2156 36 1 5.6287 -6.5725 -2.1476 37 1 2.8927 -3.4008 1.5236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240684794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:53 Heat of formation + Delta-G solvation = 74.355139 kcal Electronic energy + Delta-G solvation = -21004.084931 eV Core-core repulsion = 17938.836490 eV Total energy + Delta-G solvation = -3065.248442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05893 -40.54377 -37.93298 -36.15172 -34.67230 -34.38065 -33.50134 -31.38843 -29.75050 -27.00227 -25.58538 -25.19919 -23.47429 -23.20080 -22.57047 -21.85652 -19.49597 -18.58272 -17.95905 -17.58206 -17.26910 -16.38961 -16.01074 -15.67734 -15.43283 -15.17482 -14.98725 -14.91823 -14.42986 -14.19301 -13.75120 -13.50637 -13.15130 -13.05747 -12.90548 -12.62126 -12.43385 -12.29014 -12.08198 -11.86194 -11.75930 -11.65628 -11.37587 -11.35401 -10.62388 -10.28880 -10.13544 -9.96588 -9.28669 -8.97125 -6.59636 -0.33079 0.13069 0.57701 0.78003 1.21611 1.34120 1.42530 2.03044 2.51272 2.59977 2.87630 3.02095 3.27780 3.35528 3.49669 3.74972 3.95035 4.06016 4.10468 4.15281 4.16014 4.36612 4.46343 4.55445 4.66995 4.79603 4.82666 4.92866 4.95093 4.98257 5.02827 5.17505 5.20373 5.28866 5.34575 5.45197 5.51790 5.64301 5.88217 6.02215 6.16711 6.46032 6.60576 7.12586 7.45968 8.08950 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006372 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.576461 B = 4393.221108 C = 5864.510446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.004 3.996 3 C -0.118 4.118 4 C -0.195 4.195 5 C 0.045 3.955 6 C -0.455 4.455 7 H 0.059 0.941 8 C 0.054 3.946 9 N -0.833 5.833 10 Si 0.952 3.048 11 H -0.248 1.248 12 H -0.274 1.274 13 H -0.255 1.255 14 C 0.032 3.968 15 C -0.105 4.105 16 C 0.170 3.830 17 N -0.527 5.527 18 C 0.312 3.688 19 C -0.116 4.116 20 C -0.149 4.149 21 C -0.140 4.140 22 N -0.526 5.526 23 C 0.154 3.846 24 N -0.457 5.457 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.150 0.850 29 H 0.118 0.882 30 H 0.297 0.703 31 H 0.162 0.838 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -5.199 -1.846 7.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C -0.138 4.138 4 C -0.221 4.221 5 C 0.041 3.959 6 C -0.484 4.484 7 H 0.077 0.923 8 C -0.163 4.163 9 N -0.458 5.458 10 Si 0.775 3.225 11 H -0.172 1.172 12 H -0.200 1.200 13 H -0.179 1.179 14 C -0.107 4.107 15 C -0.110 4.110 16 C 0.003 3.997 17 N -0.240 5.240 18 C 0.046 3.954 19 C -0.136 4.136 20 C -0.187 4.187 21 C -0.178 4.178 22 N -0.239 5.239 23 C -0.012 4.012 24 N -0.166 5.166 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.158 0.842 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.296 -6.752 -1.846 8.777 hybrid contribution 0.314 2.477 -0.198 2.504 sum -4.982 -4.275 -2.044 6.876 Atomic orbital electron populations 1.20449 0.87186 1.02963 1.02642 1.21289 0.97677 0.87679 1.07052 1.21699 0.94105 0.99618 0.98346 1.21410 0.95227 0.97076 1.08410 1.18552 0.94185 0.92054 0.91155 1.19144 0.89942 1.12075 1.27251 0.92293 1.26738 0.95182 0.96252 0.98096 1.69649 1.09319 1.30814 1.36046 0.85644 0.79236 0.79479 0.78187 1.17244 1.19955 1.17929 1.19298 0.88777 0.90674 1.11905 1.20116 0.97654 0.94640 0.98593 1.23400 0.89544 0.92606 0.94151 1.68107 1.30693 1.01661 1.23588 1.22797 0.89640 0.95148 0.87839 1.20750 1.02505 0.90958 0.99395 1.23058 0.90700 1.03105 1.01822 1.23042 1.00640 1.00140 0.94027 1.68074 1.09195 1.23626 1.22983 1.23476 0.96575 0.86826 0.94308 1.67003 1.08791 1.30656 1.10119 0.90793 0.89642 0.92004 0.83267 0.86402 0.89164 0.82082 0.84223 0.89371 0.85497 0.84918 0.90119 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.02 10.15 71.24 0.72 -1.30 16 2 C 0.00 0.17 6.79 42.72 0.29 0.46 16 3 C -0.12 -4.34 9.65 22.11 0.21 -4.13 16 4 C -0.20 -8.38 7.12 22.66 0.16 -8.22 16 5 C 0.05 2.17 4.97 -21.03 -0.10 2.07 16 6 C -0.45 -23.49 7.08 23.37 0.17 -23.32 16 7 H 0.06 3.40 7.19 -2.91 -0.02 3.38 16 8 C 0.05 2.68 5.46 85.30 0.47 3.14 16 9 N -0.83 -42.68 13.92 21.85 0.30 -42.38 16 10 Si 0.95 38.81 24.61 68.60 1.69 40.50 16 11 H -0.25 -9.31 6.86 99.48 0.68 -8.63 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 13 H -0.26 -10.79 6.75 99.48 0.67 -10.12 16 14 C 0.03 1.50 6.46 42.47 0.27 1.77 16 15 C -0.11 -4.68 5.26 -19.87 -0.10 -4.78 16 16 C 0.17 7.60 9.37 85.08 0.80 8.39 16 17 N -0.53 -21.96 9.31 -186.73 -1.74 -23.70 16 18 C 0.31 11.91 7.31 138.70 1.01 12.92 16 19 C -0.12 -3.32 6.23 -11.54 -0.07 -3.40 16 20 C -0.15 -3.65 10.00 30.59 0.31 -3.34 16 21 C -0.14 -3.21 10.23 30.59 0.31 -2.90 16 22 N -0.53 -20.68 10.31 -186.73 -1.93 -22.61 16 23 C 0.15 6.27 11.00 85.08 0.94 7.21 16 24 N -0.46 -19.63 10.09 -171.13 -1.73 -21.35 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 1.83 8.07 -2.39 -0.02 1.81 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.12 4.87 5.35 -2.91 -0.02 4.85 16 30 H 0.30 13.67 8.29 -92.71 -0.77 12.90 16 31 H 0.16 7.49 6.94 -2.91 -0.02 7.47 16 32 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.09 2.59 7.53 -2.38 -0.02 2.58 16 34 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.18 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -59.68 314.39 3.01 -56.67 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 1.03 Total: 28.29 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.38 Total: -15.43 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.09 Total: -110.03 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.69 Total: 40.50 kcal Total: -59.68 3.01 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240684794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.024 kcal (2) G-P(sol) polarization free energy of solvation -59.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds