Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86806 * 119.99746 * 2 1 4 4 H 1.48494 * 109.47259 * 240.00512 * 3 2 1 5 5 H 1.48504 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46815 * 120.00206 * 3 2 1 7 7 C 1.40034 * 120.00489 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 186.29385 * 7 2 1 9 9 C 1.41315 * 119.99881 * 6.29521 * 7 2 1 10 10 C 1.40851 * 120.14619 * 173.76002 * 9 7 2 11 11 N 1.31877 * 119.97602 * 179.97438 * 10 9 7 12 12 C 1.32184 * 120.29229 * 359.72456 * 11 10 9 13 13 C 1.40071 * 120.29130 * 0.53052 * 12 11 10 14 14 C 1.48173 * 119.99221 * 179.74561 * 13 12 11 15 15 C 1.39530 * 120.06335 * 184.74689 * 14 13 12 16 16 C 1.37684 * 119.78704 * 180.02562 * 15 14 13 17 17 C 1.39288 * 120.20847 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.21064 * 359.87938 * 17 16 15 19 19 C 1.38185 * 119.69600 * 0.20835 * 18 17 16 20 20 C 1.50927 * 121.54277 * 180.38979 * 18 17 16 21 21 C 1.52862 * 110.30177 * 339.39826 * 20 18 17 22 22 C 1.53432 * 108.91857 * 51.30627 * 21 20 18 23 23 N 1.39694 * 118.98746 * 179.80996 * 17 16 15 24 24 N 1.32591 * 120.02069 * 359.47431 * 13 12 11 25 25 H 0.97001 * 120.00358 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00788 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.84856 * 180.25791 * 12 11 10 28 28 H 1.08002 * 120.10301 * 0.07360 * 15 14 13 29 29 H 1.08002 * 119.89318 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.89436 * 179.86409 * 19 18 17 31 31 H 1.08997 * 109.47476 * 219.08857 * 20 18 17 32 32 H 1.08999 * 109.30287 * 99.59819 * 20 18 17 33 33 H 1.09001 * 109.57740 * 291.44617 * 21 20 18 34 34 H 1.08991 * 109.58486 * 171.17185 * 21 20 18 35 35 H 1.08998 * 109.79285 * 56.28305 * 22 21 20 36 36 H 1.09002 * 109.78961 * 177.12253 * 22 21 20 37 37 H 0.96997 * 120.51086 * 346.52179 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0827 -1.2155 0.1020 9 6 1.3075 -2.4328 -0.1353 10 6 2.0151 -3.6434 -0.2682 11 7 1.3584 -4.7802 -0.3932 12 6 0.0366 -4.7905 -0.3891 13 6 -0.6789 -3.5929 -0.2629 14 6 -2.1605 -3.6116 -0.2647 15 6 -2.8747 -2.4132 -0.2390 16 6 -4.2513 -2.4372 -0.2402 17 6 -4.9310 -3.6526 -0.2676 18 6 -4.2248 -4.8473 -0.2963 19 6 -2.8432 -4.8261 -0.2933 20 6 -4.9305 -6.1809 -0.3352 21 6 -6.3670 -6.0356 0.1668 22 6 -7.0451 -4.8869 -0.5913 23 7 -6.3280 -3.6473 -0.2642 24 7 -0.0308 -2.4431 -0.1365 25 1 -0.4851 0.8400 0.0004 26 1 3.0951 -3.6406 -0.2677 27 1 -0.4939 -5.7259 -0.4877 28 1 -2.3493 -1.4698 -0.2189 29 1 -4.8058 -1.5106 -0.2199 30 1 -2.2905 -5.7538 -0.3134 31 1 -4.3983 -6.8922 0.2964 32 1 -4.9427 -6.5524 -1.3599 33 1 -6.3604 -5.8151 1.2342 34 1 -6.9118 -6.9627 -0.0113 35 1 -6.9930 -5.0713 -1.6643 36 1 -8.0866 -4.8037 -0.2806 37 1 -6.8168 -2.8377 -0.0489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241832967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = 58.275790 kcal Electronic energy + Delta-G solvation = -20834.343863 eV Core-core repulsion = 17768.398168 eV Total energy + Delta-G solvation = -3065.945694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74905 -38.73824 -36.07532 -34.02713 -33.16044 -32.20164 -30.87763 -29.67090 -28.44955 -25.93429 -24.72378 -23.35831 -22.58710 -21.79934 -21.02638 -18.99924 -17.57382 -17.11150 -16.05181 -15.73191 -15.18543 -15.14407 -14.76281 -14.45156 -13.76196 -13.42998 -13.37625 -13.15105 -13.02756 -12.90298 -12.49831 -12.08375 -11.62932 -11.40444 -11.33341 -11.21399 -11.03746 -10.79926 -10.68622 -10.39378 -10.21152 -9.94271 -9.74645 -9.47818 -8.90862 -8.21091 -7.93354 -7.40809 -6.71380 -6.50747 -4.67675 1.68472 1.98823 2.73502 3.02406 3.04228 3.09334 3.21954 3.61823 3.85064 4.36390 4.74354 4.76327 4.90956 4.99976 5.30207 5.36351 5.43631 5.57868 5.66613 5.73509 5.83687 5.89173 5.90638 6.05742 6.11235 6.19274 6.28805 6.34320 6.45863 6.67823 6.78369 6.83293 6.99805 7.08282 7.17982 7.37568 7.48905 7.64657 7.71551 7.94795 8.05738 8.43969 8.67772 9.27280 9.85906 10.14092 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.004557 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.171207 B = 6143.127108 C = 7280.795829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.416 4.416 8 H 0.090 0.910 9 C 0.211 3.789 10 C -0.068 4.068 11 N -0.430 5.430 12 C -0.112 4.112 13 C 0.148 3.852 14 C -0.069 4.069 15 C -0.035 4.035 16 C -0.200 4.200 17 C 0.209 3.791 18 C -0.166 4.166 19 C -0.064 4.064 20 C -0.067 4.067 21 C -0.137 4.137 22 C 0.126 3.874 23 N -0.757 5.757 24 N -0.446 5.446 25 H 0.276 0.724 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 -4.107 -0.291 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.158 4.158 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.448 4.448 8 H 0.108 0.892 9 C 0.084 3.916 10 C -0.238 4.238 11 N -0.142 5.142 12 C -0.271 4.271 13 C 0.001 3.999 14 C -0.073 4.073 15 C -0.055 4.055 16 C -0.223 4.223 17 C 0.108 3.892 18 C -0.171 4.171 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.175 4.175 22 C 0.001 3.999 23 N -0.390 5.390 24 N -0.164 5.164 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.167 0.833 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -13.201 -4.144 -0.339 13.840 hybrid contribution 0.213 1.062 0.075 1.086 sum -12.988 -3.082 -0.264 13.351 Atomic orbital electron populations 1.70045 1.07375 1.28331 1.27597 1.26097 0.94956 1.01302 0.93410 0.86300 0.80077 0.79965 0.80048 1.18776 1.20123 1.18795 1.19575 0.94940 0.89235 1.41047 0.89235 1.19362 0.88887 0.93348 0.89995 1.23176 0.99202 0.89461 1.11960 1.67640 1.08925 1.30075 1.07538 1.22510 0.90601 0.97102 1.16856 1.20654 0.92756 0.91460 0.95016 1.18443 0.91185 0.92772 1.04862 1.21416 0.92271 0.99645 0.92125 1.20639 0.94737 0.95450 1.11432 1.17590 0.83059 0.93195 0.95360 1.19097 0.93229 0.93021 1.11729 1.20945 0.92471 0.97527 0.97395 1.20279 0.94482 0.94417 1.01216 1.21872 0.96566 0.98399 1.00711 1.21434 0.95047 0.84778 0.98641 1.44522 1.02836 1.12312 1.79319 1.69563 1.07886 1.23252 1.15690 0.91250 0.85032 0.85602 0.83318 0.86755 0.86063 0.90990 0.91533 0.91380 0.91025 0.92766 0.90897 0.76816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.98 11.51 55.55 0.64 -17.34 16 2 C 0.07 1.67 5.49 -17.34 -0.10 1.58 16 3 Si 0.91 17.86 29.56 -169.99 -5.03 12.83 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.42 -10.76 9.15 -37.74 -0.35 -11.10 16 8 H 0.09 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.21 5.75 6.54 -84.83 -0.55 5.20 16 10 C -0.07 -1.76 10.98 -16.54 -0.18 -1.94 16 11 N -0.43 -10.99 10.47 -12.04 -0.13 -11.12 16 12 C -0.11 -2.72 10.61 -16.71 -0.18 -2.90 16 13 C 0.15 3.70 6.73 -82.77 -0.56 3.14 16 14 C -0.07 -1.49 5.87 -104.92 -0.62 -2.11 16 15 C -0.04 -0.72 9.57 -39.30 -0.38 -1.10 16 16 C -0.20 -3.42 9.85 -39.39 -0.39 -3.81 16 17 C 0.21 3.26 6.48 -83.67 -0.54 2.72 16 18 C -0.17 -2.64 5.76 -104.32 -0.60 -3.24 16 19 C -0.06 -1.16 9.03 -39.19 -0.35 -1.51 16 20 C -0.07 -0.81 5.80 -27.84 -0.16 -0.97 16 21 C -0.14 -1.35 6.10 -26.58 -0.16 -1.51 16 22 C 0.13 1.20 7.11 -3.60 -0.03 1.18 16 23 N -0.76 -9.04 5.79 -58.05 -0.34 -9.37 16 24 N -0.45 -12.16 7.18 -7.51 -0.05 -12.22 16 25 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 26 H 0.13 3.05 8.06 -52.49 -0.42 2.63 16 27 H 0.13 2.67 6.20 -52.49 -0.33 2.34 16 28 H 0.15 3.38 7.56 -52.49 -0.40 2.98 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.12 2.04 6.19 -52.49 -0.33 1.71 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 3.98 8.85 -40.82 -0.36 3.62 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -29.93 310.81 -9.69 -39.62 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.34 Total: 9.30 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -5.14 Total: -16.39 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.12 Total: -50.05 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.93 -9.69 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241832967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.898 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds