Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47296 * 264.73410 * 3 2 1 5 5 H 1.48506 * 109.46806 * 24.73520 * 3 2 1 6 6 H 1.48501 * 109.47018 * 144.73266 * 3 2 1 7 7 C 1.40137 * 120.00560 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99648 * 350.43360 * 7 2 1 9 9 C 1.40702 * 120.00488 * 170.43788 * 7 2 1 10 10 N 1.34106 * 120.57750 * 344.57237 * 9 7 2 11 11 C 1.31518 * 119.85561 * 180.28249 * 10 9 7 12 12 C 1.39031 * 121.14908 * 359.69453 * 11 10 9 13 13 N 1.31895 * 121.22382 * 0.02562 * 12 11 10 14 14 C 1.33062 * 120.03499 * 359.97438 * 13 12 11 15 15 C 1.47561 * 120.55156 * 180.02562 * 14 13 12 16 16 C 1.39900 * 120.08436 * 136.55183 * 15 14 13 17 17 C 1.37511 * 119.76214 * 180.09874 * 16 15 14 18 18 C 1.39458 * 120.24005 * 359.97362 * 17 16 15 19 19 C 1.38981 * 120.25276 * 359.84972 * 18 17 16 20 20 C 1.38027 * 119.71741 * 0.27126 * 19 18 17 21 21 C 1.50629 * 121.47402 * 180.54649 * 19 18 17 22 22 C 1.52877 * 110.45678 * 339.25138 * 21 19 18 23 23 C 1.53427 * 108.81004 * 51.27043 * 22 21 19 24 24 N 1.39464 * 118.95835 * 179.63776 * 18 17 16 25 25 H 0.96996 * 120.00280 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.42539 * 179.68202 * 11 10 9 27 27 H 1.07997 * 119.38688 * 180.02562 * 12 11 10 28 28 H 1.07997 * 120.11881 * 0.13124 * 16 15 14 29 29 H 1.07995 * 119.88113 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.90297 * 179.78387 * 20 19 18 31 31 H 1.09001 * 109.30666 * 99.61800 * 21 19 18 32 32 H 1.09003 * 109.30147 * 219.00592 * 21 19 18 33 33 H 1.09000 * 109.59881 * 291.46169 * 22 21 19 34 34 H 1.08996 * 109.67948 * 171.12352 * 22 21 19 35 35 H 1.09008 * 109.78715 * 177.19880 * 23 22 21 36 36 H 1.08997 * 109.79171 * 56.35752 * 23 22 21 37 37 H 0.97004 * 120.50062 * 346.36293 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.5998 1.9823 -1.3941 5 1 1.3871 2.6823 0.5859 6 1 3.4785 1.4750 0.8084 7 6 2.0078 -1.2136 -0.0005 8 1 1.4791 -2.1425 0.1545 9 6 3.4002 -1.2219 -0.2030 10 7 4.0244 -0.1422 -0.6959 11 6 5.3257 -0.1675 -0.8847 12 6 6.0754 -1.2969 -0.5757 13 7 5.5076 -2.3808 -0.0835 14 6 4.1939 -2.4077 0.1266 15 6 3.5469 -3.6141 0.6773 16 6 2.5769 -3.4948 1.6783 17 6 1.9797 -4.6236 2.1882 18 6 2.3373 -5.8841 1.7105 19 6 3.2976 -6.0086 0.7136 20 6 3.9017 -4.8786 0.2005 21 6 3.6959 -7.3554 0.1691 22 6 3.3311 -8.4613 1.1595 23 6 1.8591 -8.3001 1.5609 24 7 1.7201 -7.0114 2.2520 25 1 -0.4850 0.8400 -0.0004 26 1 5.8206 0.7041 -1.2869 27 1 7.1425 -1.2863 -0.7417 28 1 2.2978 -2.5195 2.0489 29 1 1.2310 -4.5337 2.9612 30 1 4.6509 -4.9721 -0.5718 31 1 3.1785 -7.5301 -0.7742 32 1 4.7718 -7.3695 -0.0055 33 1 3.9620 -8.3819 2.0449 34 1 3.4779 -9.4352 0.6927 35 1 1.5680 -9.1106 2.2293 36 1 1.2305 -8.3112 0.6706 37 1 1.2066 -6.9454 3.0723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241833722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = 46.191549 kcal Electronic energy + Delta-G solvation = -21143.098465 eV Core-core repulsion = 18076.628759 eV Total energy + Delta-G solvation = -3066.469707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66239 -38.85584 -35.98444 -34.19142 -33.08548 -32.60759 -31.30918 -29.48925 -28.60641 -26.16506 -24.76518 -23.25654 -22.47690 -21.62636 -21.26708 -19.10416 -17.87251 -16.98660 -16.26554 -15.91674 -15.64721 -15.14372 -14.51841 -14.13271 -13.79310 -13.58301 -13.27786 -13.12169 -12.92804 -12.82957 -12.62876 -12.43239 -11.92085 -11.70232 -11.34227 -11.18885 -10.97956 -10.90644 -10.61408 -10.39534 -10.24096 -9.90992 -9.54172 -9.39577 -9.19958 -8.11346 -7.98267 -7.59305 -7.11372 -6.72924 -4.84573 1.81189 2.10132 2.40902 2.79752 3.30977 3.39467 3.46706 3.73863 4.20361 4.37530 4.52201 4.85932 5.01311 5.08930 5.36184 5.36432 5.44903 5.52012 5.63332 5.73335 5.75452 5.81772 5.94997 6.03892 6.11960 6.14296 6.24645 6.28822 6.41972 6.52009 6.66137 6.78194 6.85124 6.97658 7.12203 7.40245 7.47901 7.57757 7.79911 7.92651 8.06144 8.27005 8.30576 8.93881 9.39585 9.74938 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.005429 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.798259 B = 5156.001280 C = 6164.019347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.323 1.323 6 H -0.265 1.265 7 C -0.375 4.375 8 H 0.113 0.887 9 C 0.204 3.796 10 N -0.547 5.547 11 C 0.106 3.894 12 C -0.124 4.124 13 N -0.410 5.410 14 C 0.014 3.986 15 C -0.034 4.034 16 C -0.051 4.051 17 C -0.192 4.192 18 C 0.201 3.799 19 C -0.163 4.163 20 C -0.060 4.060 21 C -0.067 4.067 22 C -0.136 4.136 23 C 0.127 3.873 24 N -0.757 5.757 25 H 0.294 0.706 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -10.924 3.138 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.827 3.173 4 H -0.197 1.197 5 H -0.255 1.255 6 H -0.191 1.191 7 C -0.405 4.405 8 H 0.131 0.869 9 C 0.079 3.921 10 N -0.268 5.268 11 C -0.059 4.059 12 C -0.281 4.281 13 N -0.121 5.121 14 C -0.138 4.138 15 C -0.037 4.037 16 C -0.071 4.071 17 C -0.214 4.214 18 C 0.100 3.900 19 C -0.168 4.168 20 C -0.080 4.080 21 C -0.104 4.104 22 C -0.174 4.174 23 C 0.001 3.999 24 N -0.390 5.390 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.616 -10.991 2.977 11.501 hybrid contribution 0.108 0.848 0.119 0.863 sum 1.724 -10.143 3.096 10.744 Atomic orbital electron populations 1.69590 1.08668 1.31700 1.29807 1.26526 0.95003 1.03787 0.89310 0.84658 0.77098 0.75358 0.80229 1.19681 1.25520 1.19069 1.19670 0.89274 0.96324 1.35255 0.86923 1.20372 0.94104 0.87585 0.90000 1.67653 1.09667 1.28039 1.21479 1.22986 0.91071 0.97474 0.94367 1.22288 0.99534 0.92296 1.13944 1.67811 1.10817 1.26195 1.07254 1.21165 0.89188 0.95017 1.08439 1.17964 0.97724 0.90732 0.97238 1.21157 0.93740 0.98265 0.93953 1.20504 1.04710 0.90808 1.05378 1.17545 0.92029 0.86492 0.93894 1.19056 1.00665 0.94977 1.02077 1.20899 0.97984 0.90720 0.98370 1.20220 1.01067 0.91326 0.97777 1.21865 0.96902 0.98609 1.00069 1.21414 0.96157 0.85438 0.96849 1.44408 1.59464 1.06033 1.29091 0.89545 0.85018 0.85119 0.85026 0.86754 0.86655 0.91642 0.91179 0.91448 0.91148 0.90995 0.92810 0.76898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 13.92 55.56 0.77 -18.77 16 2 C 0.08 2.02 5.52 -17.32 -0.10 1.92 16 3 Si 0.99 23.23 25.46 -169.99 -4.33 18.90 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.32 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.48 6.65 56.52 0.38 -6.10 16 7 C -0.38 -9.75 7.95 -37.94 -0.30 -10.05 16 8 H 0.11 2.98 6.05 -52.48 -0.32 2.66 16 9 C 0.20 5.27 6.32 -82.64 -0.52 4.75 16 10 N -0.55 -13.83 5.34 -9.56 -0.05 -13.88 16 11 C 0.11 2.36 11.17 -17.39 -0.19 2.16 16 12 C -0.12 -2.70 11.17 -17.23 -0.19 -2.90 16 13 N -0.41 -9.75 10.32 -7.86 -0.08 -9.83 16 14 C 0.01 0.33 6.55 -80.23 -0.53 -0.19 16 15 C -0.03 -0.74 5.34 -104.92 -0.56 -1.30 16 16 C -0.05 -1.06 7.70 -39.22 -0.30 -1.36 16 17 C -0.19 -3.40 9.85 -39.39 -0.39 -3.79 16 18 C 0.20 3.33 6.48 -83.66 -0.54 2.79 16 19 C -0.16 -2.79 5.75 -104.46 -0.60 -3.39 16 20 C -0.06 -1.18 9.27 -39.11 -0.36 -1.54 16 21 C -0.07 -0.89 5.78 -27.98 -0.16 -1.05 16 22 C -0.14 -1.46 6.12 -26.57 -0.16 -1.62 16 23 C 0.13 1.33 7.10 -3.61 -0.03 1.30 16 24 N -0.76 -9.72 5.77 -58.03 -0.34 -10.06 16 25 H 0.29 6.71 8.29 -40.82 -0.34 6.37 16 26 H 0.13 2.43 8.06 -52.49 -0.42 2.00 16 27 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 28 H 0.13 2.82 6.80 -52.49 -0.36 2.47 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.90 8.12 -51.93 -0.42 0.47 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 4.29 8.85 -40.82 -0.36 3.93 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -29.23 304.80 -8.79 -38.02 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.42 Total: 5.30 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -4.94 Total: -14.28 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.31 Total: -52.54 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.33 Total: 18.90 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.23 -8.79 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241833722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds