Wall clock time and date at job start Tue Mar 31 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00276 * 2 1 4 4 H 1.48502 * 109.47102 * 90.00123 * 3 2 1 5 5 H 1.48505 * 109.47401 * 209.99958 * 3 2 1 6 6 H 1.48498 * 109.47380 * 330.00090 * 3 2 1 7 7 C 1.38811 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99923 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00286 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47506 * 172.89853 * 10 9 7 12 12 H 1.09002 * 109.86994 * 46.27887 * 11 10 9 13 13 C 1.54321 * 109.88364 * 167.46102 * 11 10 9 14 14 C 1.55161 * 102.94283 * 141.61055 * 13 11 10 15 15 C 1.54908 * 101.57874 * 324.49486 * 14 13 11 16 16 N 1.47025 * 109.87991 * 285.26601 * 11 10 9 17 17 C 1.34780 * 125.64514 * 61.67577 * 16 11 10 18 18 O 1.21693 * 120.00141 * 6.01930 * 17 16 11 19 19 C 1.46661 * 119.99698 * 186.01775 * 17 16 11 20 20 C 1.37928 * 126.21397 * 186.38773 * 19 17 16 21 21 C 1.39931 * 107.10518 * 179.88087 * 20 19 17 22 22 F 1.35103 * 126.07145 * 180.17900 * 21 20 19 23 23 C 1.35562 * 107.84747 * 0.38321 * 21 20 19 24 24 N 1.35752 * 108.83071 * 359.76064 * 23 21 20 25 25 H 0.97003 * 125.67549 * 179.97438 * 24 23 21 26 26 H 0.97008 * 119.99879 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00138 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47332 * 292.90218 * 10 9 7 29 29 H 1.09000 * 109.47211 * 52.89802 * 10 9 7 30 30 H 1.09007 * 110.71608 * 259.97154 * 13 11 10 31 31 H 1.08997 * 110.72164 * 23.24139 * 13 11 10 32 32 H 1.08999 * 111.00330 * 206.42088 * 14 13 11 33 33 H 1.08993 * 111.00211 * 82.57114 * 14 13 11 34 34 H 1.09001 * 110.36628 * 278.16861 * 15 14 13 35 35 H 1.09001 * 110.36268 * 155.84756 * 15 14 13 36 36 H 1.07994 * 126.44527 * 359.97438 * 20 19 17 37 37 H 1.07999 * 125.58854 * 179.76566 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0732 -4.8142 0.1778 12 1 0.2185 -4.6789 -0.4850 13 6 1.7753 -6.1531 -0.1321 14 6 1.1799 -7.1122 0.9324 15 6 1.0254 -6.1676 2.1504 16 7 0.6184 -4.8729 1.5747 17 6 -0.0592 -3.9039 2.2215 18 8 -0.4395 -2.9192 1.6159 19 6 -0.3382 -4.0361 3.6552 20 6 -1.1204 -3.1911 4.4145 21 6 -1.1161 -3.6899 5.7219 22 9 -1.7653 -3.1556 6.7793 23 6 -0.3409 -4.8020 5.7396 24 7 0.1376 -5.0225 4.4886 25 1 0.7186 -5.7535 4.2259 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 2.5859 -3.7716 -0.9472 29 1 2.7764 -3.6616 0.8191 30 1 1.5298 -6.4934 -1.1382 31 1 2.8542 -6.0607 -0.0076 32 1 1.8699 -7.9263 1.1543 33 1 0.2122 -7.4986 0.6124 34 1 1.9753 -6.0674 2.6756 35 1 0.2554 -6.5416 2.8252 36 1 -1.6399 -2.3110 4.0653 37 1 -0.1375 -5.4125 6.6070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277901393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:30 Heat of formation + Delta-G solvation = -19.816397 kcal Electronic energy + Delta-G solvation = -22510.490737 eV Core-core repulsion = 19010.389486 eV Total energy + Delta-G solvation = -3500.101251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.54718 -42.44896 -40.65837 -38.37565 -36.24296 -33.49519 -32.78321 -31.89575 -30.52136 -29.82700 -26.77707 -25.26357 -24.10908 -22.47296 -22.32451 -21.44988 -20.90083 -19.37816 -18.62882 -17.69531 -17.30763 -16.76678 -16.70446 -16.40091 -16.10294 -15.51264 -15.31384 -15.17759 -14.90585 -14.74245 -14.54305 -14.27397 -13.98305 -13.72721 -13.33669 -13.12336 -12.93093 -12.74706 -12.68030 -12.25698 -12.12659 -11.97503 -11.64039 -11.52621 -10.92126 -10.88015 -10.03531 -9.64349 -9.27057 -8.82828 -7.81353 -5.10291 0.34029 1.39191 1.40745 1.44910 1.52731 1.79823 2.07220 2.36270 2.58082 3.33160 3.46231 3.57808 3.62764 3.87538 3.99482 4.03673 4.16585 4.26377 4.35554 4.36752 4.46383 4.58279 4.77698 4.79919 4.84734 4.88499 5.00284 5.12835 5.14816 5.34646 5.39004 5.48202 5.57134 5.71790 6.32487 6.35203 6.55623 7.23405 7.47939 8.32474 8.58009 9.39929 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.006770 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.450220 B = 4134.642895 C = 5964.128186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.266 1.266 6 H -0.294 1.294 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.740 5.740 10 C 0.141 3.859 11 C 0.131 3.869 12 H 0.049 0.951 13 C -0.114 4.114 14 C -0.113 4.113 15 C 0.073 3.927 16 N -0.617 5.617 17 C 0.574 3.426 18 O -0.519 6.519 19 C -0.024 4.024 20 C -0.163 4.163 21 C -0.029 4.029 22 F -0.136 7.136 23 C 0.038 3.962 24 N -0.508 5.508 25 H 0.442 0.558 26 H 0.243 0.757 27 H 0.388 0.612 28 H 0.027 0.973 29 H 0.014 0.986 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -23.014 9.883 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.221 1.221 5 H -0.191 1.191 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.390 5.390 10 C 0.013 3.987 11 C 0.027 3.973 12 H 0.067 0.933 13 C -0.152 4.152 14 C -0.151 4.151 15 C -0.048 4.048 16 N -0.352 5.352 17 C 0.362 3.638 18 O -0.393 6.393 19 C -0.139 4.139 20 C -0.191 4.191 21 C -0.054 4.054 22 F -0.115 7.115 23 C -0.100 4.100 24 N -0.111 5.111 25 H 0.289 0.711 26 H 0.052 0.948 27 H 0.227 0.773 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.474 -22.442 9.507 24.619 hybrid contribution -0.187 1.742 -0.069 1.754 sum 3.288 -20.700 9.438 22.986 Atomic orbital electron populations 1.69972 1.06529 1.24958 1.58859 1.25585 0.96310 1.00907 1.04183 0.85224 0.77866 0.80040 0.77127 1.22063 1.19107 1.22077 1.19568 0.90895 0.86098 1.41468 0.91573 1.43114 1.07003 1.00395 1.88487 1.21251 0.94008 0.86006 0.97453 1.21895 0.96091 0.96972 0.82299 0.93321 1.22648 1.00771 0.90415 1.01379 1.22773 1.03146 0.96926 0.92251 1.22917 1.00949 0.82243 0.98738 1.48421 1.55987 1.17538 1.13265 1.17130 0.78979 0.82469 0.85176 1.90980 1.51101 1.30517 1.66708 1.19921 1.07351 0.95777 0.90847 1.21346 1.03443 1.01231 0.93058 1.16653 1.05448 0.99368 0.83963 1.91408 1.80191 1.86031 1.53913 1.22426 0.98980 0.98813 0.89744 1.42303 1.38868 1.22964 1.06953 0.71082 0.94805 0.77252 0.95504 0.96788 0.88345 0.89045 0.85710 0.89967 0.89213 0.89008 0.85505 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -65.46 13.06 21.65 0.28 -65.17 16 2 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 3 Si 0.97 50.71 29.55 68.60 2.03 52.74 16 4 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 5 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 7 C -0.25 -15.44 9.99 84.03 0.84 -14.60 16 8 H 0.07 3.93 7.83 -2.90 -0.02 3.91 16 9 N -0.74 -42.50 4.42 -343.45 -1.52 -44.02 16 10 C 0.14 6.02 5.62 86.38 0.49 6.50 16 11 C 0.13 4.27 3.04 45.34 0.14 4.41 16 12 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 13 C -0.11 -2.08 6.45 31.78 0.20 -1.88 16 14 C -0.11 -1.27 7.09 31.99 0.23 -1.05 16 15 C 0.07 1.14 5.23 86.86 0.45 1.60 16 16 N -0.62 -18.94 3.06 -792.73 -2.43 -21.37 16 17 C 0.57 23.28 7.53 86.44 0.65 23.93 16 18 O -0.52 -28.38 13.40 -4.32 -0.06 -28.43 16 19 C -0.02 -0.80 6.82 40.36 0.28 -0.52 16 20 C -0.16 -5.92 10.66 22.61 0.24 -5.68 16 21 C -0.03 -0.83 7.98 22.06 0.18 -0.66 16 22 F -0.14 -4.04 17.32 44.97 0.78 -3.26 16 23 C 0.04 0.68 11.90 83.47 0.99 1.68 16 24 N -0.51 -9.94 5.37 -183.38 -0.98 -10.92 16 25 H 0.44 5.06 5.37 -92.71 -0.50 4.56 16 26 H 0.24 16.19 8.31 -92.70 -0.77 15.42 16 27 H 0.39 24.40 4.90 -92.71 -0.45 23.95 16 28 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.05 7.82 -2.39 -0.02 1.03 16 35 H 0.09 1.03 6.25 -2.39 -0.01 1.02 16 36 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 37 H 0.24 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -91.40 308.56 3.41 -87.99 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.16 Total: 23.19 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.15 Total: 9.27 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -4.65 Total: -141.49 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.06 Total: -28.43 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.03 Total: 52.74 kcal Total: -91.40 3.41 -87.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277901393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -91.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds