Wall clock time and date at job start Tue Mar 31 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99460 * 2 1 4 4 C 1.53005 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46880 * 64.99872 * 4 3 2 6 6 C 1.46498 * 120.00197 * 269.99852 * 5 4 3 7 7 C 1.50697 * 109.46881 * 275.96679 * 6 5 4 8 8 H 1.07999 * 120.00640 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99720 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00346 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46909 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46874 * 119.99936 * 11 9 7 14 14 H 1.48499 * 109.47090 * 239.99925 * 11 9 7 15 15 C 1.34786 * 119.99690 * 90.00446 * 5 4 3 16 16 O 1.21509 * 120.00084 * 4.57226 * 15 5 4 17 17 C 1.48148 * 119.99708 * 184.58142 * 15 5 4 18 18 C 1.39890 * 121.12796 * 132.17667 * 17 15 5 19 19 N 1.31762 * 119.79209 * 180.28262 * 18 17 15 20 20 N 1.28273 * 122.41684 * 359.73830 * 19 18 17 21 21 C 1.32283 * 122.43606 * 0.02562 * 20 19 18 22 22 O 1.35701 * 120.07920 * 180.02562 * 21 20 19 23 23 C 1.39233 * 119.83882 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.47454 * 299.99742 * 1 2 3 25 25 H 1.08997 * 109.47581 * 60.00167 * 1 2 3 26 26 H 1.09008 * 109.46518 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47297 * 60.00087 * 3 2 1 28 28 H 1.08998 * 109.47327 * 300.00098 * 3 2 1 29 29 H 1.08996 * 109.46797 * 305.00002 * 4 3 2 30 30 H 1.09002 * 109.46607 * 185.00356 * 4 3 2 31 31 H 1.09001 * 109.46750 * 35.96605 * 6 5 4 32 32 H 1.08996 * 109.47091 * 155.97060 * 6 5 4 33 33 H 0.96991 * 120.00736 * 180.02562 * 10 9 7 34 34 H 1.08006 * 120.10072 * 0.04887 * 18 17 15 35 35 H 0.96698 * 113.99945 * 269.97846 * 22 21 20 36 36 H 1.07995 * 121.11559 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.1063 -0.8924 -1.3403 7 6 5.4507 -1.3108 -0.8031 8 1 6.1394 -0.5664 -0.4317 9 6 5.8010 -2.6443 -0.7846 10 7 4.9622 -3.5509 -1.2363 11 14 7.4672 -3.1631 -0.1180 12 1 8.2191 -1.9616 0.3248 13 1 7.2756 -4.0803 1.0340 14 1 8.2315 -3.8599 -1.1837 15 6 4.2633 1.3332 -2.3200 16 8 4.2364 2.5440 -2.2222 17 6 4.6111 0.7021 -3.6144 18 6 4.0123 1.1211 -4.8073 19 7 4.3372 0.5375 -5.9431 20 7 5.1972 -0.4120 -6.0070 21 6 5.8219 -0.8766 -4.9375 22 8 6.7240 -1.8829 -5.0603 23 6 5.5524 -0.3299 -3.6857 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8507 0.5687 0.8427 30 1 3.9783 2.1768 0.0903 31 1 3.3178 -1.3640 -0.7538 32 1 4.0190 -1.2016 -2.3818 33 1 5.2084 -4.4889 -1.2230 34 1 3.2832 1.9178 -4.7966 35 1 6.3410 -2.7669 -4.9764 36 1 6.0501 -0.6936 -2.7989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292810713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:25 Heat of formation + Delta-G solvation = -77.538007 kcal Electronic energy + Delta-G solvation = -22708.450754 eV Core-core repulsion = 19193.473717 eV Total energy + Delta-G solvation = -3514.977037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42569 -40.73483 -38.77250 -38.51271 -36.87395 -34.74707 -34.39107 -32.46736 -31.21224 -29.13527 -27.33770 -26.35722 -25.58243 -24.86701 -23.79529 -21.12700 -19.76215 -18.78059 -18.65637 -18.11444 -17.84791 -17.37788 -17.04652 -16.94803 -16.54424 -16.20437 -15.89501 -15.38800 -15.07578 -14.72639 -14.50047 -14.21898 -13.53305 -13.31261 -13.24189 -13.10434 -12.81053 -12.75808 -12.67969 -12.46201 -12.19382 -11.99002 -11.70878 -11.52437 -11.18928 -10.80414 -10.62936 -10.59407 -10.42367 -9.59193 -8.22253 -6.37146 -0.67993 -0.29293 1.41584 1.42336 1.48824 1.55499 1.98754 2.28356 2.41165 2.45549 2.93714 3.06194 3.13771 3.30495 3.50516 3.92430 4.07303 4.14305 4.20954 4.38054 4.44816 4.53619 4.56392 4.61354 4.83098 4.85278 4.89565 4.93117 5.02298 5.28334 5.58887 5.74615 6.00969 6.26524 6.41049 6.43006 6.74196 7.02175 7.34011 7.45919 8.82836 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.009133 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.918723 B = 3065.013911 C = 4820.848537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.575 5.575 6 C 0.250 3.750 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.038 3.962 10 N -0.906 5.906 11 Si 0.945 3.055 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.274 1.274 15 C 0.560 3.440 16 O -0.569 6.569 17 C -0.114 4.114 18 C 0.077 3.923 19 N -0.236 5.236 20 N -0.270 5.270 21 C 0.257 3.743 22 O -0.476 6.476 23 C -0.087 4.087 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.024 0.976 33 H 0.270 0.730 34 H 0.205 0.795 35 H 0.424 0.576 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 4.849 0.924 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.024 4.024 4 C -0.008 4.008 5 N -0.303 5.303 6 C 0.129 3.871 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.165 4.165 10 N -0.544 5.544 11 Si 0.771 3.229 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.346 3.654 16 O -0.451 6.451 17 C -0.128 4.128 18 C -0.089 4.089 19 N -0.079 5.079 20 N -0.123 5.123 21 C 0.071 3.929 22 O -0.284 6.284 23 C -0.117 4.117 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.221 0.779 35 H 0.285 0.715 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.994 5.342 -0.694 7.345 hybrid contribution 0.565 -0.864 2.007 2.257 sum -4.428 4.478 1.314 6.433 Atomic orbital electron populations 1.22869 0.79984 1.03273 1.00723 1.88008 1.21146 1.28330 1.95512 1.22974 0.93243 0.84848 1.01371 1.21643 0.93114 0.99916 0.86171 1.48098 1.62133 1.09257 1.10818 1.19313 0.96637 0.73812 0.97304 1.21614 1.01525 0.92688 1.42974 0.92331 1.25491 0.99895 0.96286 0.94798 1.70013 1.36754 1.01938 1.45711 0.85696 0.80389 0.78375 0.78436 1.19589 1.20837 1.19967 1.18043 0.77459 0.86079 0.83770 1.90702 1.55621 1.13805 1.84987 1.21205 0.98507 0.96805 0.96293 1.24662 0.98351 0.98592 0.87281 1.72945 1.07558 1.03296 1.24096 1.72597 1.03578 1.07757 1.28353 1.20737 0.90200 0.92934 0.89058 1.84685 1.31668 1.17709 1.94342 1.23751 0.94711 0.92587 1.00656 0.92329 0.93833 0.89507 0.89618 0.93651 0.89387 0.88018 0.94959 0.95788 0.92088 0.77882 0.71480 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.28 9.44 -148.98 -1.41 -14.69 16 3 C 0.05 1.49 6.28 71.98 0.45 1.95 16 4 C 0.11 3.75 5.86 86.38 0.51 4.25 16 5 N -0.57 -22.40 2.42 -829.23 -2.01 -24.41 16 6 C 0.25 11.14 4.53 85.63 0.39 11.53 16 7 C -0.55 -25.91 6.91 25.60 0.18 -25.74 16 8 H 0.06 2.81 7.81 -2.91 -0.02 2.78 16 9 C 0.04 1.81 5.46 84.66 0.46 2.27 16 10 N -0.91 -45.56 13.29 21.45 0.28 -45.28 16 11 Si 0.95 38.73 29.54 68.60 2.03 40.76 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 15 C 0.56 21.77 7.32 86.87 0.64 22.40 16 16 O -0.57 -23.06 16.60 -3.74 -0.06 -23.13 16 17 C -0.11 -4.25 4.97 -19.85 -0.10 -4.35 16 18 C 0.08 2.54 11.05 85.10 0.94 3.48 16 19 N -0.24 -8.40 11.48 -56.51 -0.65 -9.05 16 20 N -0.27 -10.12 11.50 -170.30 -1.96 -12.08 16 21 C 0.26 9.47 7.85 84.86 0.67 10.14 16 22 O -0.48 -15.75 13.57 -90.21 -1.22 -16.97 16 23 C -0.09 -3.36 7.68 22.90 0.18 -3.19 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 30 H 0.10 3.12 7.36 -2.39 -0.02 3.10 16 31 H 0.03 1.60 7.03 -2.39 -0.02 1.58 16 32 H 0.02 1.13 5.41 -2.39 -0.01 1.12 16 33 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 34 H 0.20 5.43 8.06 -2.91 -0.02 5.41 16 35 H 0.42 10.68 9.06 -74.06 -0.67 10.01 16 36 H 0.18 7.59 4.93 -2.91 -0.01 7.58 16 Total: -1.00 -59.16 314.85 1.01 -58.15 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.45 Total: 22.06 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 5.55 Total: 24.64 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -4.33 Total: -90.81 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -2.69 Total: -54.79 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -59.16 1.01 -58.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292810713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.390 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds