Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39644 * 120.13948 * 53.37666 * 3 2 1 5 5 C 1.38074 * 120.26313 * 180.27984 * 4 3 2 6 6 C 1.38073 * 120.54793 * 359.75978 * 5 4 3 7 7 C 1.39638 * 120.26093 * 359.97438 * 6 5 4 8 8 C 1.43201 * 120.13534 * 179.97438 * 7 6 5 9 9 N 5.92883 * 144.97132 * 233.44765 * 2 1 3 10 10 C 1.40340 * 119.73294 * 0.02562 * 7 6 5 11 11 N 1.38401 * 120.26476 * 180.02562 * 10 7 6 12 12 C 1.46852 * 110.99700 * 244.20473 * 11 10 7 13 13 C 1.53044 * 109.52198 * 174.16590 * 12 11 10 14 14 C 1.53112 * 109.28010 * 59.17582 * 13 12 11 15 15 C 1.53116 * 109.16591 * 302.34710 * 14 13 12 16 16 H 1.09004 * 109.53383 * 297.69623 * 15 14 13 17 17 C 1.50694 * 109.50594 * 177.59490 * 15 14 13 18 18 H 1.08000 * 120.00563 * 240.19687 * 17 15 14 19 19 C 1.37885 * 119.99902 * 60.19850 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.46849 * 111.00238 * 119.99800 * 11 10 7 26 26 H 1.07994 * 119.86345 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.72243 * 179.74013 * 5 4 3 28 28 H 1.07997 * 119.86587 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.46190 * 294.17269 * 12 11 10 30 30 H 1.08994 * 109.46462 * 54.14746 * 12 11 10 31 31 H 1.08999 * 109.50002 * 179.12318 * 13 12 11 32 32 H 1.09007 * 109.49621 * 299.19650 * 13 12 11 33 33 H 1.09003 * 109.52299 * 182.44001 * 14 13 12 34 34 H 1.09001 * 109.52333 * 62.25375 * 14 13 12 35 35 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.46434 * 65.81551 * 25 11 10 37 37 H 1.08994 * 109.46147 * 305.85166 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.7195 -0.9692 5 6 4.6502 -0.7253 -0.9682 6 6 5.3542 -0.0173 -0.0145 7 6 4.6755 0.7149 0.9617 8 6 5.4084 1.4479 1.9499 9 7 5.9909 2.0267 2.7337 10 6 3.2722 0.7288 0.9713 11 7 2.5883 1.4512 1.9335 12 6 1.8049 0.5623 2.8010 13 6 1.1809 1.3760 3.9371 14 6 0.2815 2.4643 3.3446 15 6 1.1109 3.3468 2.4077 16 1 1.8992 3.8412 2.9755 17 6 0.2204 4.3846 1.7746 18 1 0.1113 4.4202 0.7007 19 6 -0.4552 5.2890 2.5664 20 7 -0.3228 5.2455 3.8741 21 14 -1.5585 6.5759 1.7815 22 1 -2.1661 7.4200 2.8416 23 1 -0.7539 7.4282 0.8699 24 1 -2.6332 5.9021 1.0093 25 6 1.7369 2.4761 1.3160 26 1 2.7298 -1.2780 -1.7196 27 1 5.1839 -1.2887 -1.7193 28 1 6.4341 -0.0292 -0.0242 29 1 1.0154 0.0887 2.2174 30 1 2.4570 -0.2044 3.2191 31 1 0.5868 0.7185 4.5718 32 1 1.9704 1.8382 4.5298 33 1 -0.1309 3.0737 4.1488 34 1 -0.5305 2.0008 2.7844 35 1 -0.7978 5.8819 4.4311 36 1 0.9478 1.9935 0.7393 37 1 2.3397 3.0993 0.6555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327686993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = 95.739558 kcal Electronic energy + Delta-G solvation = -21503.319954 eV Core-core repulsion = 18438.998811 eV Total energy + Delta-G solvation = -3064.321144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70493 -37.86735 -36.60605 -35.95342 -34.06995 -32.13945 -31.76217 -30.07207 -29.31719 -25.04839 -24.70657 -24.12620 -22.08997 -21.54670 -19.98554 -18.86868 -17.08203 -16.98973 -16.09459 -15.95504 -15.04673 -14.71288 -14.38984 -14.23208 -13.88727 -13.39524 -13.32987 -13.13712 -13.04673 -12.70284 -12.56481 -12.47921 -12.32332 -12.02443 -11.93373 -11.87988 -11.61324 -10.94722 -10.81844 -10.74567 -10.21621 -9.93697 -9.58835 -9.26495 -9.19541 -8.98347 -8.73693 -8.37094 -8.13203 -5.99978 -4.06528 0.40622 0.71333 2.56595 2.65791 2.93591 3.32173 3.36566 3.37920 3.39137 3.74562 3.83152 3.89299 3.97877 4.44488 4.61953 4.75715 4.97792 5.13116 5.30423 5.33252 5.50944 5.54593 5.81234 5.85507 5.90484 5.96442 6.05604 6.20978 6.29878 6.34409 6.56436 6.62343 6.81702 7.02062 7.26619 7.35079 7.51635 7.59271 7.71652 7.72865 7.99805 8.10289 8.40734 8.95877 9.57940 11.06191 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.005550 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.917937 B = 5044.026283 C = 5485.940152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.246 3.754 3 C -0.065 4.065 4 C -0.036 4.036 5 C -0.133 4.133 6 C -0.040 4.040 7 C -0.013 4.013 8 C 0.268 3.732 9 N -0.408 5.408 10 C 0.203 3.797 11 N -0.516 5.516 12 C 0.063 3.937 13 C -0.117 4.117 14 C -0.112 4.112 15 C 0.059 3.941 16 H 0.037 0.963 17 C -0.516 4.516 18 H 0.053 0.947 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.891 3.109 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.278 1.278 25 C 0.063 3.937 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.037 0.963 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 -14.523 -8.845 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.068 4.068 3 C -0.071 4.071 4 C -0.058 4.058 5 C -0.151 4.151 6 C -0.062 4.062 7 C -0.018 4.018 8 C -0.048 4.048 9 N -0.083 5.083 10 C 0.102 3.898 11 N -0.238 5.238 12 C -0.062 4.062 13 C -0.154 4.154 14 C -0.150 4.150 15 C 0.040 3.960 16 H 0.055 0.945 17 C -0.555 4.555 18 H 0.071 0.929 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.719 3.281 22 H -0.212 1.212 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.061 4.061 26 H 0.155 0.845 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.662 -13.264 -7.130 17.892 hybrid contribution -1.106 0.179 -1.176 1.625 sum 8.555 -13.085 -8.306 17.703 Atomic orbital electron populations 1.81332 1.11605 1.07180 1.06695 1.25247 0.92487 0.94484 0.94629 1.16741 0.85489 1.04403 1.00499 1.21292 0.94423 0.94736 0.95372 1.20933 0.93265 1.01075 0.99787 1.21334 1.00647 0.92622 0.91558 1.15876 0.89861 1.00817 0.95223 1.25033 0.92935 0.93628 0.93190 1.81169 1.10057 1.08149 1.08936 1.19011 0.91613 0.89525 0.89676 1.59455 1.31815 1.13860 1.18631 1.22235 0.95005 0.94134 0.94868 1.21684 0.99557 0.98205 0.95991 1.21676 0.96817 0.95151 1.01334 1.18645 0.94472 0.91603 0.91247 0.94530 1.21020 1.27311 1.14228 0.92955 0.92891 1.24908 0.96581 0.97326 0.94808 1.69875 1.42705 1.36620 1.03333 0.86672 0.80917 0.81570 0.78949 1.21224 1.20231 1.20324 1.22658 0.93290 0.91538 0.98663 0.84474 0.83977 0.84071 0.94584 0.91577 0.92878 0.91719 0.88770 0.94905 0.92904 0.94533 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.98 17.78 41.84 0.74 -6.23 16 2 C 0.25 3.73 10.13 -22.47 -0.23 3.50 16 3 C -0.07 -0.79 5.51 -106.66 -0.59 -1.37 16 4 C -0.04 -0.28 9.74 -39.12 -0.38 -0.66 16 5 C -0.13 -0.76 10.00 -39.70 -0.40 -1.15 16 6 C -0.04 -0.29 9.74 -39.12 -0.38 -0.67 16 7 C -0.01 -0.15 5.75 -106.66 -0.61 -0.77 16 8 C 0.27 3.89 14.80 -22.50 -0.33 3.56 16 9 N -0.41 -6.95 18.53 41.81 0.77 -6.17 16 10 C 0.20 2.81 4.67 -83.32 -0.39 2.42 16 11 N -0.52 -9.11 3.97 -170.63 -0.68 -9.79 16 12 C 0.06 1.09 5.07 -3.83 -0.02 1.07 16 13 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 14 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 15 C 0.06 1.48 2.26 -91.70 -0.21 1.27 16 16 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.07 1.83 5.31 -17.82 -0.09 1.73 16 20 N -0.89 -25.50 11.36 55.43 0.63 -24.87 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.06 1.31 4.24 -3.83 -0.02 1.30 16 26 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 28 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.04 0.63 5.49 -51.93 -0.29 0.35 16 30 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.09 2.51 6.16 -51.93 -0.32 2.19 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.78 5.05 -51.93 -0.26 0.51 16 37 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -31.75 315.10 -7.25 -39.00 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.21 Total: -3.67 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.24 Total: -9.59 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 1.47 Total: -47.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.75 -7.25 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327686993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.738 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds