Wall clock time and date at job start Tue Mar 31 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46875 * 2 1 4 4 C 1.35860 * 126.13048 * 269.97520 * 3 2 1 5 5 N 1.30156 * 109.02265 * 179.74975 * 4 3 2 6 6 C 1.35806 * 108.85422 * 0.44199 * 5 4 3 7 7 C 1.47169 * 126.24265 * 179.82297 * 6 5 4 8 8 O 1.21553 * 119.99848 * 179.69293 * 7 6 5 9 9 O 1.34785 * 120.00388 * 359.41458 * 7 6 5 10 10 C 1.45196 * 117.00384 * 180.27156 * 9 7 6 11 11 C 1.50695 * 109.47491 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00417 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99901 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46671 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00615 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00005 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99826 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47405 * 90.00009 * 19 17 15 21 21 H 1.48503 * 109.46762 * 210.00242 * 19 17 15 22 22 H 1.48500 * 109.46963 * 329.99576 * 19 17 15 23 23 C 1.35336 * 126.12129 * 90.00675 * 3 2 1 24 24 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47156 * 299.99456 * 1 2 3 26 26 H 1.08997 * 109.46954 * 59.99925 * 1 2 3 27 27 H 1.09008 * 109.46772 * 240.00434 * 2 1 3 28 28 H 1.08994 * 109.47569 * 120.00469 * 2 1 3 29 29 H 1.08005 * 125.49130 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.47461 * 300.00591 * 10 9 7 31 31 H 1.09010 * 109.46796 * 60.00380 * 10 9 7 32 32 H 0.96999 * 119.99691 * 0.02562 * 13 11 10 33 33 H 1.09006 * 109.47139 * 299.99946 * 14 13 11 34 34 H 1.08996 * 109.47184 * 60.00309 * 14 13 11 35 35 H 0.97002 * 119.99990 * 179.97438 * 18 17 15 36 36 H 1.07995 * 126.56840 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2858 2.1364 -1.0973 5 7 2.6951 3.3110 -0.7144 6 6 2.7143 3.3482 0.6430 7 6 3.1188 4.4917 1.4764 8 8 3.0869 4.4019 2.6882 9 8 3.5301 5.6366 0.8962 10 6 3.9197 6.7207 1.7800 11 6 4.3462 7.9100 0.9586 12 8 4.3235 7.8500 -0.2526 13 7 4.7528 9.0403 1.5698 14 6 5.1668 10.1966 0.7711 15 6 5.5725 11.3213 1.6885 16 1 5.5261 11.1883 2.7593 17 6 6.0019 12.5206 1.1608 18 7 6.0579 12.6828 -0.1431 19 14 6.5055 13.9144 2.2979 20 1 7.9565 13.8106 2.5959 21 1 6.2273 15.2158 1.6389 22 1 5.7326 13.8250 3.5628 23 6 2.2843 2.1334 1.0932 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.1730 1.8150 -2.1223 30 1 3.0740 6.9985 2.4090 31 1 4.7492 6.3967 2.4087 32 1 4.7713 9.0882 2.5384 33 1 6.0121 9.9192 0.1411 34 1 4.3368 10.5207 0.1435 35 1 6.3597 13.5266 -0.5143 36 1 2.1770 1.8305 2.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330296987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:06 Heat of formation + Delta-G solvation = -61.400303 kcal Electronic energy + Delta-G solvation = -20541.225118 eV Core-core repulsion = 17026.947864 eV Total energy + Delta-G solvation = -3514.277254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.53946 -40.11116 -38.52457 -36.15538 -35.49415 -34.14399 -32.33439 -30.87047 -30.29615 -28.97397 -26.67545 -24.77039 -23.63650 -22.43191 -21.34861 -20.46358 -19.81018 -18.27546 -17.30949 -17.04696 -16.55208 -16.09296 -15.70896 -15.35847 -15.09758 -14.83014 -14.52354 -14.36331 -14.17706 -14.05926 -13.27345 -12.94062 -12.81247 -12.69144 -12.33415 -12.01829 -11.91994 -11.66484 -10.96515 -10.87054 -10.75960 -10.53531 -10.38940 -10.29108 -10.16335 -9.37631 -9.04493 -9.00661 -8.71877 -7.88968 -6.13894 -4.20981 1.15940 2.07068 2.11079 2.67532 3.23135 3.27071 3.32700 3.33023 3.35697 3.98449 4.03118 4.26677 4.28990 4.35227 4.41910 4.55646 4.86129 4.93268 4.99657 5.10985 5.22029 5.30264 5.36888 5.41893 5.46669 5.65603 6.02592 6.42349 6.63941 7.31278 7.40782 7.46617 7.54138 7.67675 7.90877 7.98657 8.59868 8.79213 9.07416 9.45129 10.96280 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.057996 B = 0.002459 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.677130 B =11383.040810 C =11748.802805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.186 3.814 5 N -0.436 5.436 6 C -0.045 4.045 7 C 0.554 3.446 8 O -0.517 6.517 9 O -0.309 6.309 10 C 0.048 3.952 11 C 0.499 3.501 12 O -0.529 6.529 13 N -0.708 5.708 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.045 3.955 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.215 0.785 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.392 0.608 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 -27.858 2.862 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.153 5.153 6 C -0.172 4.172 7 C 0.399 3.601 8 O -0.407 6.407 9 O -0.222 6.222 10 C -0.030 4.030 11 C 0.282 3.718 12 O -0.406 6.406 13 N -0.359 5.359 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.094 4.094 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.231 0.769 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.201 -27.170 1.643 29.068 hybrid contribution 0.071 0.192 1.622 1.635 sum -10.130 -26.978 3.266 29.002 Atomic orbital electron populations 1.22196 0.93626 1.03536 1.03678 1.22004 0.95983 0.79065 1.05317 1.45665 1.48260 1.13315 1.06736 1.25387 1.03448 0.87146 0.93808 1.70845 1.15999 1.18506 1.09957 1.19349 1.13824 0.93378 0.90678 1.19675 0.73430 0.81666 0.85379 1.90853 1.52265 1.83170 1.14385 1.86742 1.74973 1.21325 1.39151 1.22887 1.02088 0.85795 0.92222 1.19883 0.79450 0.83801 0.88663 1.90728 1.53423 1.82639 1.13800 1.46342 1.65200 1.13705 1.10658 1.19161 0.95793 0.80681 0.91270 1.21221 1.46152 0.97723 0.93115 0.91772 1.24962 0.95216 0.98628 0.95273 1.69979 1.45813 1.25788 1.10617 0.86389 0.78882 0.81042 0.80432 1.20464 1.21022 1.19740 1.22507 1.02083 0.91330 0.93485 0.90196 0.91585 0.91445 0.88161 0.88551 0.76891 0.88515 0.88504 0.77497 0.95284 0.95273 0.92420 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.40 10.24 37.16 0.38 -0.02 16 2 C 0.10 0.24 6.84 -4.04 -0.03 0.22 16 3 N -0.46 -3.21 2.72 -118.35 -0.32 -3.53 16 4 C 0.19 1.68 12.55 -89.91 -1.13 0.55 16 5 N -0.44 -6.28 11.33 -11.05 -0.13 -6.41 16 6 C -0.04 -0.63 7.01 -83.11 -0.58 -1.22 16 7 C 0.55 9.10 7.95 34.36 0.27 9.38 16 8 O -0.52 -8.54 16.67 -19.31 -0.32 -8.86 16 9 O -0.31 -5.82 9.77 -47.41 -0.46 -6.29 16 10 C 0.05 0.81 5.95 36.00 0.21 1.03 16 11 C 0.50 10.80 7.91 -10.99 -0.09 10.71 16 12 O -0.53 -13.96 16.50 -14.11 -0.23 -14.19 16 13 N -0.71 -15.43 5.55 -61.47 -0.34 -15.77 16 14 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 15 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 16 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.39 13.29 55.43 0.74 -25.66 16 19 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.05 0.43 11.26 -16.63 -0.19 0.24 16 24 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 0.06 8.14 -51.92 -0.42 -0.36 16 28 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.21 1.04 8.06 -52.48 -0.42 0.61 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -38.22 330.18 -7.23 -45.44 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.52 Total: 0.13 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -1.59 Total: 14.08 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.05 Total: -51.36 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.02 Total: -29.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -38.22 -7.23 -45.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330296987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.956 kcal (2) G-P(sol) polarization free energy of solvation -38.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds