Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 C 1.52995 * 109.47234 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47372 * 64.99819 * 4 3 2 6 6 C 1.35695 * 117.00402 * 180.02562 * 5 4 3 7 7 C 1.39258 * 120.13961 * 180.02562 * 6 5 4 8 8 C 1.38645 * 117.91818 * 179.97438 * 7 6 5 9 9 C 1.38757 * 118.01954 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.01147 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47154 * 95.00228 * 10 9 8 12 12 C 1.34783 * 119.99879 * 179.97438 * 11 10 9 13 13 O 1.21686 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.46372 * 119.99921 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99719 * 0.02562 * 14 12 11 16 16 C 1.40047 * 120.00046 * 179.97438 * 14 12 11 17 17 N 1.30677 * 119.99733 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00133 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47079 * 90.00132 * 18 16 14 20 20 H 1.48496 * 109.47120 * 210.00552 * 18 16 14 21 21 H 1.48497 * 109.47000 * 330.00447 * 18 16 14 22 22 N 1.31815 * 119.97806 * 0.02562 * 9 8 7 23 23 N 1.28357 * 122.25708 * 359.97438 * 22 9 8 24 24 H 1.09009 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46815 * 299.99365 * 1 2 3 26 26 H 1.08996 * 109.47422 * 59.99487 * 1 2 3 27 27 H 1.08993 * 109.47237 * 60.00301 * 3 2 1 28 28 H 1.09000 * 109.47050 * 300.00526 * 3 2 1 29 29 H 1.09008 * 109.47153 * 305.00025 * 4 3 2 30 30 H 1.08998 * 109.47232 * 185.00066 * 4 3 2 31 31 H 1.07997 * 121.04364 * 0.24217 * 7 6 5 32 32 H 1.08002 * 120.98798 * 179.97438 * 8 7 6 33 33 H 1.09007 * 109.47187 * 215.00219 * 10 9 8 34 34 H 1.09001 * 109.47491 * 334.99336 * 10 9 8 35 35 H 0.96995 * 119.99732 * 359.97438 * 11 10 9 36 36 H 0.97001 * 119.99471 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.2999 0.3979 -1.3835 7 6 5.7902 -0.1853 -2.5491 8 6 7.1621 -0.3484 -2.6659 9 6 7.9612 0.0797 -1.6154 10 6 9.4580 -0.0764 -1.6948 11 7 10.0528 1.1662 -2.1933 12 6 11.3886 1.2596 -2.3469 13 8 12.1004 0.3118 -2.0720 14 6 11.9828 2.5009 -2.8455 15 1 11.3509 3.3420 -3.0898 16 6 13.3708 2.5983 -3.0046 17 7 14.1353 1.5807 -2.7084 18 14 14.1293 4.1826 -3.6401 19 1 14.4479 5.0730 -2.4952 20 1 15.3748 3.8707 -4.3862 21 1 13.1681 4.8636 -4.5443 22 7 7.4106 0.6220 -0.5476 23 7 6.1413 0.7753 -0.4343 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6887 1.8463 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 3.8514 0.5681 0.8410 30 1 3.9785 2.1764 0.0889 31 1 5.1231 -0.4968 -3.3392 32 1 7.5958 -0.7953 -3.5483 33 1 9.8535 -0.2963 -0.7031 34 1 9.7026 -0.8940 -2.3729 35 1 9.4853 1.9215 -2.4128 36 1 15.0967 1.6480 -2.8190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332908583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -61.406298 kcal Electronic energy + Delta-G solvation = -20635.184094 eV Core-core repulsion = 17120.906580 eV Total energy + Delta-G solvation = -3514.277514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24305 -39.06189 -37.86108 -37.20601 -34.11038 -33.11133 -32.42949 -31.45905 -30.34808 -27.23337 -26.77608 -25.46750 -24.79512 -22.71292 -22.57379 -19.72847 -18.91305 -17.65310 -17.48912 -17.25528 -16.16793 -15.92098 -15.61201 -15.52756 -15.22566 -14.53763 -14.22295 -14.05135 -13.88836 -13.69213 -13.37115 -12.81998 -12.75231 -12.21565 -12.02678 -11.89911 -11.46526 -11.36469 -11.20401 -11.04121 -10.91431 -10.46450 -10.28212 -10.21430 -10.13989 -9.57060 -9.10029 -8.85057 -7.63344 -7.56555 -6.19009 -4.64345 0.76453 0.97400 2.64436 3.15306 3.21907 3.25165 3.31638 3.50858 4.04877 4.12863 4.33454 4.51072 4.56453 4.62302 4.71098 4.78984 4.92802 4.94779 5.01594 5.05741 5.11109 5.14654 5.28606 5.33795 5.55027 5.65158 5.82125 6.01996 6.34688 6.42263 6.67658 6.91430 7.43725 7.87576 8.02477 8.31235 8.71104 9.02271 9.48656 10.58513 10.76500 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.002641 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.931582 B =10600.405836 C =10920.919359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.062 3.938 4 C 0.068 3.932 5 O -0.294 6.294 6 C 0.256 3.744 7 C -0.137 4.137 8 C -0.069 4.069 9 C 0.039 3.961 10 C 0.189 3.811 11 N -0.761 5.761 12 C 0.557 3.443 13 O -0.579 6.579 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.767 5.767 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.190 5.190 23 N -0.304 5.304 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.381 0.619 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.512 -0.946 1.381 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.015 4.015 4 C -0.007 4.007 5 O -0.199 6.199 6 C 0.071 3.929 7 C -0.166 4.166 8 C -0.098 4.098 9 C -0.108 4.108 10 C 0.063 3.937 11 N -0.417 5.417 12 C 0.361 3.639 13 O -0.461 6.461 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.396 5.396 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.190 1.190 22 N -0.034 5.034 23 N -0.159 5.159 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.212 0.788 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.781 -1.291 2.937 23.996 hybrid contribution -0.437 0.834 -1.627 1.880 sum -24.217 -0.456 1.310 24.257 Atomic orbital electron populations 1.22765 0.80809 1.03003 0.99995 1.87973 1.19857 1.27232 1.95428 1.22642 0.91587 0.85708 1.01563 1.22779 0.92777 0.99306 0.85850 1.86253 1.16918 1.76514 1.40214 1.21467 0.85766 0.93103 0.92540 1.21518 0.96119 1.01392 0.97607 1.22313 0.92294 0.95611 0.99567 1.23114 0.99469 0.96811 0.91439 1.19631 0.82494 0.90633 1.00955 1.46164 1.08690 1.13507 1.73383 1.18232 0.78492 0.89232 0.77934 1.90607 1.59763 1.40490 1.55269 1.20850 0.92031 0.98431 1.46661 0.91406 1.25709 0.97185 0.96971 0.93406 1.70021 1.04921 1.29440 1.35192 0.86353 0.78781 0.82177 0.79327 1.19712 1.20455 1.18954 1.72797 1.01885 1.08199 1.20485 1.73096 0.98545 1.19146 1.25151 0.89472 0.94006 0.93922 0.90761 0.92073 0.90262 0.89518 0.82750 0.82247 0.90951 0.91111 0.78799 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.79 10.67 -40.08 -0.43 -4.22 16 3 C 0.06 0.48 6.32 37.16 0.23 0.72 16 4 C 0.07 0.69 5.71 37.16 0.21 0.90 16 5 O -0.29 -3.66 10.10 -23.64 -0.24 -3.90 16 6 C 0.26 3.53 7.57 -16.95 -0.13 3.40 16 7 C -0.14 -1.61 10.16 -39.05 -0.40 -2.01 16 8 C -0.07 -0.87 9.85 -39.24 -0.39 -1.26 16 9 C 0.04 0.63 6.23 -82.41 -0.51 0.12 16 10 C 0.19 3.63 6.00 -5.19 -0.03 3.60 16 11 N -0.76 -17.10 5.54 -62.90 -0.35 -17.44 16 12 C 0.56 15.79 7.75 -12.99 -0.10 15.68 16 13 O -0.58 -18.59 15.02 5.20 0.08 -18.52 16 14 C -0.54 -15.33 9.54 -35.63 -0.34 -15.67 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 17 N -0.77 -22.94 11.83 55.55 0.66 -22.28 16 18 Si 0.91 20.15 29.56 -169.99 -5.02 15.12 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.19 -3.33 11.42 33.60 0.38 -2.95 16 23 N -0.30 -4.85 10.41 30.50 0.32 -4.53 16 24 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.04 0.20 8.14 -51.92 -0.42 -0.23 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.85 8.11 -51.92 -0.42 0.43 16 30 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 35 H 0.38 7.80 8.44 -40.82 -0.34 7.46 16 36 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -36.24 325.33 -4.67 -40.91 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.53 Total: 3.78 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.43 Total: 9.12 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.01 Total: -47.20 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.59 Total: -26.63 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.24 -4.67 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332908583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.495 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds