Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21302 * 119.99682 * 2 1 4 4 C 1.46772 * 120.00076 * 180.02562 * 2 1 3 5 5 C 1.37979 * 125.91590 * 179.97438 * 4 2 1 6 6 N 1.34712 * 106.65040 * 179.73516 * 5 4 2 7 7 C 1.46500 * 126.52219 * 180.24321 * 6 5 4 8 8 C 1.50697 * 109.47150 * 125.00411 * 7 6 5 9 9 O 1.20830 * 120.00092 * 0.02562 * 8 7 6 10 10 O 1.34226 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.45199 * 116.99900 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47253 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46968 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00056 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47430 * 89.99819 * 18 16 14 20 20 H 1.48502 * 109.46845 * 209.99542 * 18 16 14 21 21 H 1.48497 * 109.47181 * 329.99341 * 18 16 14 22 22 N 1.40156 * 106.95566 * 0.27013 * 6 5 4 23 23 N 1.28710 * 108.68144 * 359.97438 * 22 6 5 24 24 H 1.08999 * 109.47382 * 239.99450 * 1 2 3 25 25 H 1.08996 * 109.47078 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47389 * 119.99726 * 1 2 3 27 27 H 1.08002 * 126.67821 * 0.02562 * 5 4 2 28 28 H 1.09004 * 109.47083 * 245.00514 * 7 6 5 29 29 H 1.09000 * 109.46989 * 5.00456 * 7 6 5 30 30 H 1.09000 * 109.47805 * 300.00754 * 11 10 8 31 31 H 1.09006 * 109.47020 * 60.00931 * 11 10 8 32 32 H 1.08992 * 109.47506 * 300.00805 * 12 11 10 33 33 H 1.09006 * 109.46358 * 60.00513 * 12 11 10 34 34 H 1.08995 * 109.47169 * 300.00231 * 13 12 11 35 35 H 1.08997 * 109.46933 * 60.00386 * 13 12 11 36 36 H 0.97004 * 119.99928 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 3.6133 -1.4133 -0.0011 6 7 3.8643 -2.7368 0.0044 7 6 5.1834 -3.3741 0.0111 8 6 5.2773 -4.3223 1.1786 9 8 4.3385 -4.4528 1.9280 10 8 6.4035 -5.0227 1.3854 11 6 6.4232 -5.9164 2.5296 12 6 7.7787 -6.6223 2.6022 13 6 7.7992 -7.5645 3.8074 14 6 9.1346 -8.2593 3.8793 15 1 9.8930 -8.0494 3.1395 16 6 9.3885 -9.1620 4.8899 17 7 10.5541 -9.7679 4.9529 18 14 8.0771 -9.5245 6.1699 19 1 7.2342 -10.6565 5.7082 20 1 8.7266 -9.8834 7.4561 21 1 7.2280 -8.3216 6.3629 22 7 2.6232 -3.3881 0.0020 23 7 1.6916 -2.5001 -0.0040 24 1 -0.3634 -0.5139 0.8899 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 4.3443 -0.6182 -0.0008 28 1 5.3247 -3.9265 -0.9179 29 1 5.9556 -2.6100 0.1006 30 1 6.2636 -5.3421 3.4422 31 1 5.6319 -6.6587 2.4244 32 1 7.9387 -7.1966 1.6897 33 1 8.5697 -5.8797 2.7075 34 1 7.6391 -6.9906 4.7201 35 1 7.0082 -8.3070 3.7016 36 1 10.7326 -10.4033 5.6638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343978326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -32.040994 kcal Electronic energy + Delta-G solvation = -20448.587938 eV Core-core repulsion = 16935.583800 eV Total energy + Delta-G solvation = -3513.004138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.57716 -40.58755 -39.35204 -36.98566 -35.10167 -34.21481 -31.98098 -31.72354 -30.58224 -29.11307 -27.50761 -23.96881 -23.77765 -22.68781 -21.46189 -20.48880 -20.04177 -18.15616 -17.83635 -17.10571 -16.91781 -16.44242 -16.01445 -15.86625 -15.58415 -15.02133 -14.69602 -14.58647 -14.26395 -13.53999 -13.32616 -12.82278 -12.75608 -12.51387 -12.49609 -12.36000 -12.05399 -11.70640 -11.26912 -11.18355 -11.09842 -10.70899 -10.61623 -10.36513 -10.11776 -9.93833 -9.81813 -9.66678 -9.33028 -8.63195 -6.13367 -4.13098 0.52265 1.07523 1.36289 1.82528 2.41434 2.57360 3.25228 3.33280 3.35777 3.46598 3.83623 3.95861 4.27751 4.34555 4.37082 4.37486 4.71294 4.85613 5.02048 5.11956 5.19269 5.28232 5.29562 5.33463 5.68195 5.69899 5.75020 6.08619 6.25273 6.45465 6.65872 6.98528 7.10355 7.22165 7.43736 7.60597 7.66331 8.42112 8.90169 9.47818 10.99597 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043846 B = 0.002430 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.445459 B =11517.919763 C =11796.259999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.446 3.554 3 O -0.462 6.462 4 C -0.140 4.140 5 C 0.098 3.902 6 N -0.355 5.355 7 C 0.130 3.870 8 C 0.445 3.555 9 O -0.483 6.483 10 O -0.350 6.350 11 C 0.068 3.932 12 C -0.101 4.101 13 C -0.011 4.011 14 C -0.524 4.524 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 N -0.031 5.031 23 N -0.191 5.191 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.208 0.792 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 18.916 -12.793 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.322 3.678 3 O -0.335 6.335 4 C -0.275 4.275 5 C -0.058 4.058 6 N -0.139 5.139 7 C 0.007 3.993 8 C 0.284 3.716 9 O -0.369 6.369 10 O -0.266 6.266 11 C -0.005 4.005 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.561 4.561 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.538 5.538 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 N -0.012 5.012 23 N -0.067 5.067 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.225 0.775 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.784 17.900 -12.416 26.902 hybrid contribution 0.076 0.307 0.910 0.963 sum -15.708 18.207 -11.506 26.658 Atomic orbital electron populations 1.22111 0.92218 1.04814 1.05385 1.21313 0.91730 0.84650 0.70059 1.90588 1.72386 1.32959 1.37600 1.22444 0.91283 0.95105 1.18713 1.23965 0.98423 0.86690 0.96705 1.49974 1.08559 1.05534 1.49863 1.21345 0.80569 0.98163 0.99238 1.23033 0.81900 0.80805 0.85849 1.90793 1.37881 1.62826 1.45372 1.86462 1.37199 1.52949 1.49960 1.23638 1.01656 0.90625 0.84557 1.21590 0.92280 0.98503 1.01510 1.19524 0.98336 0.94241 0.92695 1.21021 0.98444 1.23595 1.13085 0.90767 1.25016 0.95377 0.95427 0.97573 1.69902 1.22271 1.28175 1.33477 0.86785 0.82138 0.79179 0.81237 1.20154 1.21221 1.19026 1.82184 0.82828 1.16061 1.20169 1.74726 1.24175 0.98540 1.09245 0.88424 0.89597 0.88445 0.77541 0.83771 0.83305 0.91259 0.91088 0.91342 0.91379 0.96267 0.96639 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 10.09 36.01 0.36 -0.77 16 2 C 0.45 3.94 7.24 -30.86 -0.22 3.72 16 3 O -0.46 -5.05 17.61 5.54 0.10 -4.96 16 4 C -0.14 -1.37 6.96 -83.29 -0.58 -1.95 16 5 C 0.10 0.77 11.34 -16.38 -0.19 0.58 16 6 N -0.36 -3.28 3.40 -61.89 -0.21 -3.50 16 7 C 0.13 0.84 7.13 -5.20 -0.04 0.80 16 8 C 0.44 5.27 7.99 36.00 0.29 5.55 16 9 O -0.48 -7.69 15.48 -18.75 -0.29 -7.98 16 10 O -0.35 -4.61 10.22 -39.25 -0.40 -5.01 16 11 C 0.07 1.07 5.47 37.16 0.20 1.27 16 12 C -0.10 -1.86 5.53 -26.73 -0.15 -2.01 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 14 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 22 N -0.03 -0.40 12.86 60.35 0.78 0.38 16 23 N -0.19 -2.29 12.21 32.97 0.40 -1.89 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.15 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 31 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 35 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -35.83 327.18 -4.03 -39.86 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -4.58 Total: -5.92 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.86 Total: -6.11 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 1.74 Total: -31.44 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.59 Total: -17.95 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.83 -4.03 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343978326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.817 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds