Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21302 * 119.99682 * 2 1 4 4 C 1.46772 * 120.00076 * 180.02562 * 2 1 3 5 5 C 1.37979 * 125.91590 * 179.97438 * 4 2 1 6 6 N 1.34712 * 106.65040 * 179.73516 * 5 4 2 7 7 C 1.46500 * 126.52219 * 180.24321 * 6 5 4 8 8 C 1.50697 * 109.47150 * 125.00411 * 7 6 5 9 9 O 1.20830 * 120.00092 * 0.02562 * 8 7 6 10 10 O 1.34226 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.45199 * 116.99900 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47253 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46968 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00056 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47430 * 89.99819 * 18 16 14 20 20 H 1.48502 * 109.46845 * 209.99542 * 18 16 14 21 21 H 1.48497 * 109.47181 * 329.99341 * 18 16 14 22 22 N 1.40156 * 106.95566 * 0.27013 * 6 5 4 23 23 N 1.28710 * 108.68144 * 359.97438 * 22 6 5 24 24 H 1.08999 * 109.47382 * 239.99450 * 1 2 3 25 25 H 1.08996 * 109.47078 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47389 * 119.99726 * 1 2 3 27 27 H 1.08002 * 126.67821 * 0.02562 * 5 4 2 28 28 H 1.09004 * 109.47083 * 245.00514 * 7 6 5 29 29 H 1.09000 * 109.46989 * 5.00456 * 7 6 5 30 30 H 1.09000 * 109.47805 * 300.00754 * 11 10 8 31 31 H 1.09006 * 109.47020 * 60.00931 * 11 10 8 32 32 H 1.08992 * 109.47506 * 300.00805 * 12 11 10 33 33 H 1.09006 * 109.46358 * 60.00513 * 12 11 10 34 34 H 1.08995 * 109.47169 * 300.00231 * 13 12 11 35 35 H 1.08997 * 109.46933 * 60.00386 * 13 12 11 36 36 H 0.97004 * 119.99928 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 3.6133 -1.4133 -0.0011 6 7 3.8643 -2.7368 0.0044 7 6 5.1834 -3.3741 0.0111 8 6 5.2773 -4.3223 1.1786 9 8 4.3385 -4.4528 1.9280 10 8 6.4035 -5.0227 1.3854 11 6 6.4232 -5.9164 2.5296 12 6 7.7787 -6.6223 2.6022 13 6 7.7992 -7.5645 3.8074 14 6 9.1346 -8.2593 3.8793 15 1 9.8930 -8.0494 3.1395 16 6 9.3885 -9.1620 4.8899 17 7 10.5541 -9.7679 4.9529 18 14 8.0771 -9.5245 6.1699 19 1 7.2342 -10.6565 5.7082 20 1 8.7266 -9.8834 7.4561 21 1 7.2280 -8.3216 6.3629 22 7 2.6232 -3.3881 0.0020 23 7 1.6916 -2.5001 -0.0040 24 1 -0.3634 -0.5139 0.8899 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 4.3443 -0.6182 -0.0008 28 1 5.3247 -3.9265 -0.9179 29 1 5.9556 -2.6100 0.1006 30 1 6.2636 -5.3421 3.4422 31 1 5.6319 -6.6587 2.4244 32 1 7.9387 -7.1966 1.6897 33 1 8.5697 -5.8797 2.7075 34 1 7.6391 -6.9906 4.7201 35 1 7.0082 -8.3070 3.7016 36 1 10.7326 -10.4033 5.6638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343978326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -57.137683 kcal Electronic energy + Delta-G solvation = -20449.676212 eV Core-core repulsion = 16935.583800 eV Total energy + Delta-G solvation = -3514.092413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.27948 -41.59323 -40.05677 -38.08014 -35.97632 -35.82163 -33.90508 -32.39596 -31.23955 -30.00399 -28.97013 -25.22173 -24.62030 -23.71679 -22.33037 -22.07151 -20.86184 -19.14161 -18.90842 -18.52916 -17.99939 -17.46112 -16.71337 -16.68125 -16.31606 -16.19674 -15.96691 -15.53015 -15.34501 -14.83292 -14.47322 -14.41140 -13.81260 -13.72355 -13.27266 -13.03751 -13.02808 -12.88717 -12.65446 -12.45918 -12.20862 -12.09090 -11.91709 -11.78823 -11.43951 -11.40644 -11.34313 -11.04190 -10.79187 -10.38879 -8.31753 -6.36497 -0.10555 0.32144 0.75323 0.93577 1.35365 1.36786 1.47795 1.56179 1.89508 2.33624 2.83782 3.03530 3.24109 3.30369 3.57975 3.81024 3.96561 3.97476 4.02115 4.13405 4.27998 4.34875 4.47120 4.67501 4.67888 4.71835 4.77314 4.94184 5.17847 5.21230 5.24830 5.46105 5.47224 5.60660 6.23895 6.33004 6.47954 6.71665 6.87939 7.28131 8.84500 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.043846 B = 0.002430 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.445459 B =11517.919763 C =11796.259999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.450 3.550 3 O -0.487 6.487 4 C -0.161 4.161 5 C 0.117 3.883 6 N -0.355 5.355 7 C 0.134 3.866 8 C 0.444 3.556 9 O -0.528 6.528 10 O -0.346 6.346 11 C 0.078 3.922 12 C -0.091 4.091 13 C -0.011 4.011 14 C -0.532 4.532 15 H 0.038 0.962 16 C 0.005 3.995 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.247 1.247 22 N -0.080 5.080 23 N -0.208 5.208 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.249 0.751 28 H 0.177 0.823 29 H 0.203 0.797 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 20.557 -13.246 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.328 3.672 3 O -0.362 6.362 4 C -0.298 4.298 5 C -0.039 4.039 6 N -0.139 5.139 7 C 0.013 3.987 8 C 0.286 3.714 9 O -0.416 6.416 10 O -0.262 6.262 11 C 0.004 3.996 12 C -0.129 4.129 13 C -0.049 4.049 14 C -0.570 4.570 15 H 0.057 0.943 16 C -0.192 4.192 17 N -0.588 5.588 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.171 1.171 22 N -0.061 5.061 23 N -0.083 5.083 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.265 0.735 28 H 0.194 0.806 29 H 0.220 0.780 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.815 19.535 -12.897 28.822 hybrid contribution 0.475 -0.144 0.961 1.082 sum -16.340 19.390 -11.936 28.026 Atomic orbital electron populations 1.22138 0.90401 1.05726 1.05990 1.21608 0.92712 0.83974 0.68917 1.90577 1.73006 1.33496 1.39091 1.22808 0.92524 0.94886 1.19551 1.24653 0.98494 0.86852 0.93919 1.50139 1.08545 1.06008 1.49185 1.21871 0.80458 0.98797 0.97596 1.24069 0.80425 0.80373 0.86484 1.90790 1.39128 1.64294 1.47392 1.86442 1.38215 1.52792 1.48748 1.23205 0.99538 0.91080 0.85735 1.21320 0.94122 0.97957 0.99508 1.19462 0.95540 0.94967 0.94922 1.21395 0.99879 1.23756 1.11980 0.94325 1.25984 0.97706 0.95385 1.00146 1.70052 1.24658 1.29380 1.34752 0.85697 0.79307 0.79785 0.78104 1.19232 1.20971 1.17065 1.82119 0.84320 1.17181 1.22468 1.74680 1.24841 0.99343 1.09442 0.88040 0.88554 0.87430 0.73454 0.80625 0.78009 0.91180 0.91337 0.91504 0.91335 0.95765 0.95963 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 10.09 71.24 0.72 -1.30 16 2 C 0.45 7.37 7.24 27.92 0.20 7.57 16 3 O -0.49 -9.92 17.61 -3.10 -0.05 -9.97 16 4 C -0.16 -2.91 6.96 40.89 0.28 -2.62 16 5 C 0.12 1.47 11.34 84.19 0.95 2.43 16 6 N -0.35 -5.60 3.40 -349.72 -1.19 -6.79 16 7 C 0.13 1.19 7.13 85.63 0.61 1.80 16 8 C 0.44 9.45 7.99 71.23 0.57 10.02 16 9 O -0.53 -16.20 15.48 21.95 0.34 -15.86 16 10 O -0.35 -8.30 10.22 -51.38 -0.53 -8.83 16 11 C 0.08 2.32 5.47 71.98 0.39 2.71 16 12 C -0.09 -3.26 5.53 30.60 0.17 -3.09 16 13 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 14 C -0.53 -29.78 9.66 25.60 0.25 -29.53 16 15 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 16 C 0.00 0.28 5.47 84.65 0.46 0.75 16 17 N -0.95 -58.54 13.96 21.44 0.30 -58.25 16 18 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 22 N -0.08 -1.98 12.86 37.02 0.48 -1.51 16 23 N -0.21 -4.86 12.21 -49.61 -0.61 -5.47 16 24 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.25 0.76 8.06 -2.91 -0.02 0.73 16 28 H 0.18 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.20 -0.33 8.08 -2.39 -0.02 -0.35 16 30 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 31 H 0.07 2.08 8.13 -2.38 -0.02 2.06 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 35 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -80.93 327.18 6.39 -74.53 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 1.04 Total: -1.63 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.73 Total: -11.66 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.02 Total: -72.00 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.24 Total: -34.66 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -80.93 6.39 -74.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343978326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.396 kcal (2) G-P(sol) polarization free energy of solvation -80.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds