Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 C 1.52995 * 109.47276 * 239.99909 * 2 1 3 5 5 F 1.39899 * 109.47461 * 59.99509 * 4 2 1 6 6 N 1.46493 * 109.46919 * 119.99480 * 2 1 3 7 7 C 1.34777 * 120.00657 * 300.00073 * 6 2 1 8 8 O 1.21583 * 119.99443 * 0.02562 * 7 6 2 9 9 N 1.34777 * 120.00506 * 180.27476 * 7 6 2 10 10 C 1.39460 * 120.00060 * 175.17765 * 9 7 6 11 11 C 1.38639 * 119.64954 * 186.28818 * 10 9 7 12 12 C 1.40821 * 118.67929 * 179.97438 * 11 10 9 13 13 C 1.41541 * 121.00269 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99731 * 201.15287 * 13 12 11 15 15 C 1.40030 * 119.99880 * 21.14210 * 13 12 11 16 16 N 1.30743 * 119.99956 * 12.11135 * 15 13 12 17 17 Si 1.86801 * 120.00104 * 192.10739 * 15 13 12 18 18 H 1.48490 * 109.47249 * 90.00250 * 17 15 13 19 19 H 1.48505 * 109.46978 * 210.00456 * 17 15 13 20 20 H 1.48498 * 109.46840 * 329.99990 * 17 15 13 21 21 C 1.41167 * 118.00046 * 359.97438 * 12 11 10 22 22 C 1.36591 * 119.12813 * 0.02562 * 21 12 11 23 23 N 1.32062 * 121.26005 * 359.73808 * 22 21 12 24 24 H 1.08999 * 109.47273 * 300.00426 * 1 2 3 25 25 H 1.08997 * 109.46905 * 59.99989 * 1 2 3 26 26 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46871 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46576 * 299.99422 * 3 2 1 29 29 H 1.08992 * 109.47257 * 59.99988 * 3 2 1 30 30 H 1.08999 * 109.47239 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47051 * 300.00086 * 4 2 1 32 32 H 0.97000 * 119.99966 * 120.00214 * 6 2 1 33 33 H 0.97000 * 120.00020 * 355.18674 * 9 7 6 34 34 H 1.07998 * 120.66226 * 0.02562 * 11 10 9 35 35 H 0.96996 * 120.00359 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.43442 * 179.97438 * 21 12 11 37 37 H 1.07999 * 119.36721 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 9 1.5737 -0.0619 -2.3915 6 7 2.0183 -0.6905 1.1962 7 6 1.6927 -0.2300 2.4203 8 8 0.9933 0.7583 2.5318 9 7 2.1465 -0.8621 3.5208 10 6 1.8943 -0.3294 4.7847 11 6 2.4732 -0.9110 5.9021 12 6 2.2050 -0.3562 7.1684 13 6 2.7696 -0.9109 8.3418 14 1 2.3147 -0.7196 9.3024 15 6 3.9178 -1.7080 8.2571 16 7 4.6039 -1.7499 7.1449 17 14 4.4692 -2.7115 9.7330 18 1 3.8357 -4.0536 9.6837 19 1 5.9465 -2.8601 9.7065 20 1 4.0638 -2.0183 10.9821 21 6 1.3562 0.7699 7.2322 22 6 0.8318 1.2737 6.0759 23 7 1.1084 0.7306 4.9044 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 2.5760 -1.4791 1.1073 33 1 2.6487 -1.6874 3.4337 34 1 3.1177 -1.7720 5.8034 35 1 5.3994 -2.3017 7.0863 36 1 1.1238 1.2266 8.1829 37 1 0.1822 2.1354 6.1203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353374162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = -42.555456 kcal Electronic energy + Delta-G solvation = -21818.343632 eV Core-core repulsion = 18317.256342 eV Total energy + Delta-G solvation = -3501.087290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.87490 -40.06141 -38.30752 -36.16838 -34.23654 -33.76753 -31.41266 -30.44509 -28.25099 -27.21212 -27.04023 -26.01899 -22.43183 -21.86372 -20.36337 -19.57041 -18.23590 -17.61325 -16.76608 -16.11514 -15.84129 -15.23846 -15.12841 -14.88858 -14.31727 -14.16686 -14.03871 -13.48799 -13.33904 -12.96600 -12.72416 -12.63877 -12.42385 -12.02801 -11.76329 -11.45418 -11.31973 -11.20358 -11.06400 -10.91175 -10.80765 -10.27227 -10.08505 -9.76487 -9.41670 -9.37351 -8.87882 -7.98775 -7.72258 -7.00242 -6.76534 -4.64352 2.69292 2.80100 2.89260 2.99731 3.03252 3.25124 3.82390 3.84127 4.28885 4.46043 4.53391 4.69313 4.74584 4.98456 5.31498 5.38883 5.71657 5.74943 5.79912 5.88787 5.96645 5.98015 6.40811 6.48020 6.54650 6.63968 6.74687 6.81216 6.93255 7.16416 7.26318 7.44717 7.49880 7.87601 8.10655 8.38275 8.47002 8.73060 8.75272 9.17955 9.74156 10.04877 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.003783 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.120487 B = 7400.183363 C = 8074.672141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.166 3.834 3 C -0.166 4.166 4 C 0.063 3.937 5 F -0.206 7.206 6 N -0.749 5.749 7 C 0.696 3.304 8 O -0.525 6.525 9 N -0.667 5.667 10 C 0.353 3.647 11 C -0.251 4.251 12 C 0.140 3.860 13 C -0.450 4.450 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.791 5.791 17 Si 0.915 3.085 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.285 4.285 22 C 0.119 3.881 23 N -0.553 5.553 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.390 0.610 33 H 0.403 0.597 34 H 0.139 0.861 35 H 0.281 0.719 36 H 0.101 0.899 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -3.123 -11.657 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.079 3.921 3 C -0.224 4.224 4 C 0.008 3.992 5 F -0.187 7.187 6 N -0.407 5.407 7 C 0.396 3.604 8 O -0.396 6.396 9 N -0.315 5.315 10 C 0.127 3.873 11 C -0.276 4.276 12 C 0.131 3.869 13 C -0.481 4.481 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.417 5.417 17 Si 0.739 3.261 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.309 4.309 22 C -0.035 4.035 23 N -0.272 5.272 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.237 0.763 34 H 0.156 0.844 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.088 -1.877 -12.503 12.690 hybrid contribution 1.358 -1.682 1.256 2.501 sum 0.270 -3.560 -11.246 11.799 Atomic orbital electron populations 1.22251 0.93548 1.02317 1.04271 1.20539 0.95363 0.93151 0.83071 1.22254 1.00774 0.95148 1.04247 1.22095 0.99863 0.95775 0.81499 1.92764 1.90778 1.83400 1.51771 1.45157 1.57846 1.33529 1.04199 1.15979 0.81079 0.83598 0.79735 1.90950 1.38856 1.25358 1.84393 1.42568 1.57728 1.27480 1.03734 1.17986 0.94185 0.92493 0.82613 1.21783 1.09123 1.05790 0.90943 1.17579 0.88219 0.88451 0.92614 1.19629 1.08462 1.25602 0.94387 0.90045 1.25976 0.95645 0.95283 0.97432 1.69736 1.13495 1.31639 1.26852 0.86197 0.78041 0.80269 0.81569 1.19218 1.20198 1.18500 1.21649 1.09505 1.01751 0.98010 1.21458 0.96961 0.97398 0.87653 1.67195 1.19967 1.12936 1.27077 0.89196 0.91726 0.92869 0.92819 0.91739 0.89186 0.90249 0.90292 0.77667 0.76253 0.84356 0.90832 0.88131 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 8.28 37.16 0.31 -1.88 16 2 C 0.17 2.03 0.91 -131.82 -0.12 1.91 16 3 C -0.17 -2.25 8.28 37.16 0.31 -1.94 16 4 C 0.06 0.58 6.48 37.15 0.24 0.82 16 5 F -0.21 -2.28 16.32 2.25 0.04 -2.24 16 6 N -0.75 -9.81 5.11 -52.42 -0.27 -10.08 16 7 C 0.70 12.89 7.94 -86.92 -0.69 12.20 16 8 O -0.52 -11.70 10.81 5.29 0.06 -11.64 16 9 N -0.67 -12.86 5.39 -15.86 -0.09 -12.94 16 10 C 0.35 8.50 7.42 -154.68 -1.15 7.35 16 11 C -0.25 -6.30 8.67 -38.46 -0.33 -6.63 16 12 C 0.14 3.65 5.65 -106.55 -0.60 3.05 16 13 C -0.45 -11.45 9.15 -37.65 -0.34 -11.79 16 14 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 15 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 16 N -0.79 -19.10 10.50 55.55 0.58 -18.52 16 17 Si 0.91 17.68 29.58 -169.99 -5.03 12.66 16 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 C -0.29 -6.99 9.85 -39.07 -0.38 -7.37 16 22 C 0.12 2.86 11.10 -18.05 -0.20 2.66 16 23 N -0.55 -14.05 7.86 -12.76 -0.10 -14.15 16 24 H 0.09 1.50 6.16 -51.93 -0.32 1.18 16 25 H 0.06 0.77 7.80 -51.93 -0.41 0.37 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.79 7.80 -51.93 -0.41 0.38 16 29 H 0.09 1.53 6.16 -51.93 -0.32 1.21 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 3.77 8.49 -40.82 -0.35 3.42 16 33 H 0.40 6.30 8.72 -40.82 -0.36 5.95 16 34 H 0.14 3.45 5.81 -52.49 -0.30 3.14 16 35 H 0.28 6.11 8.29 -40.82 -0.34 5.78 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -30.84 311.73 -7.71 -38.55 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -4.54 Total: 13.60 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.06 Total: 0.07 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.13 Total: -55.68 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.06 Total: -11.64 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.84 -7.71 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353374162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.008 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds