Wall clock time and date at job start Tue Mar 31 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47141 * 2 1 4 4 C 1.50710 * 109.46829 * 240.00072 * 2 1 3 5 5 O 1.21288 * 119.99761 * 264.51673 * 4 2 1 6 6 N 1.34777 * 119.99939 * 84.51168 * 4 2 1 7 7 C 1.37094 * 119.99945 * 174.37354 * 6 4 2 8 8 H 1.08003 * 119.99855 * 151.86248 * 7 6 4 9 9 C 1.38943 * 120.00308 * 331.86360 * 7 6 4 10 10 N 1.31419 * 120.00104 * 110.73564 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 290.74232 * 9 7 6 12 12 H 1.48501 * 109.47035 * 359.97438 * 11 9 7 13 13 H 1.48489 * 109.47485 * 119.99557 * 11 9 7 14 14 H 1.48503 * 109.47086 * 239.99972 * 11 9 7 15 15 C 1.46502 * 119.99787 * 354.37761 * 6 4 2 16 16 C 1.53006 * 109.47085 * 91.89700 * 15 6 4 17 17 C 1.50704 * 109.46974 * 179.97438 * 16 15 6 18 18 O 1.20823 * 120.00241 * 359.97438 * 17 16 15 19 19 O 1.34230 * 119.99601 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47163 * 120.00135 * 2 1 3 21 21 C 1.34950 * 126.03777 * 35.00294 * 20 2 1 22 22 C 1.35315 * 107.74430 * 179.97438 * 21 20 2 23 23 C 1.39877 * 107.92083 * 0.02562 * 22 21 20 24 24 N 1.30834 * 108.19994 * 359.73552 * 23 22 21 25 25 H 1.08999 * 109.46937 * 295.02224 * 1 2 3 26 26 H 1.08997 * 109.47370 * 55.02163 * 1 2 3 27 27 H 1.09004 * 109.47363 * 175.02726 * 1 2 3 28 28 H 0.96996 * 119.99648 * 184.93936 * 10 9 7 29 29 H 1.09001 * 109.46945 * 211.89332 * 15 6 4 30 30 H 1.08999 * 109.47447 * 331.89401 * 15 6 4 31 31 H 1.09001 * 109.46928 * 299.99641 * 16 15 6 32 32 H 1.08999 * 109.47222 * 59.99563 * 16 15 6 33 33 H 0.96697 * 116.99415 * 179.97438 * 19 17 16 34 34 H 1.07993 * 126.12322 * 359.97438 * 21 20 2 35 35 H 1.08004 * 126.03985 * 179.97438 * 22 21 20 36 36 H 1.07992 * 125.89468 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 8 2.3290 -1.8851 -1.1739 6 7 2.1516 -0.0405 -2.3939 7 6 2.7159 -0.6531 -3.4829 8 1 2.4289 -0.3533 -4.4800 9 6 3.6569 -1.6595 -3.3039 10 7 3.3579 -2.9013 -3.6133 11 14 5.3470 -1.2477 -2.6231 12 1 5.4315 0.2108 -2.3571 13 1 5.5673 -1.9954 -1.3593 14 1 6.3860 -1.6310 -3.6126 15 6 1.6785 1.3423 -2.4947 16 6 2.8270 2.2994 -2.1691 17 6 2.3404 3.7219 -2.2734 18 8 1.1929 3.9471 -2.5774 19 8 3.1821 4.7386 -2.0295 20 7 2.0184 -0.6906 1.1961 21 6 1.4403 -1.7560 1.7894 22 6 2.1968 -2.0930 2.8595 23 6 3.2739 -1.2028 2.9226 24 7 3.1708 -0.3651 1.9229 25 1 -0.3633 0.4347 0.9312 26 1 -0.3634 0.5891 -0.8420 27 1 -0.3634 -1.0238 -0.0891 28 1 3.9876 -3.6138 -3.4219 29 1 1.3236 1.5320 -3.5078 30 1 0.8631 1.4997 -1.7887 31 1 3.1818 2.1097 -1.1560 32 1 3.6424 2.1420 -2.8751 33 1 2.8243 5.6334 -2.1093 34 1 0.5359 -2.2508 1.4678 35 1 2.0029 -2.9053 3.5443 36 1 4.0575 -1.2087 3.6657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:18 Heat of formation + Delta-G solvation = -16.536914 kcal Electronic energy + Delta-G solvation = -22909.575067 eV Core-core repulsion = 19397.243236 eV Total energy + Delta-G solvation = -3512.331831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80031 -40.13130 -38.65264 -36.10435 -34.80169 -34.05610 -32.55769 -30.46912 -29.65577 -29.10979 -25.60831 -24.76151 -23.29029 -21.19209 -20.62914 -20.36063 -19.15426 -18.04366 -17.36169 -16.74046 -16.49171 -15.86977 -15.43132 -14.84407 -14.59237 -14.06476 -13.82188 -13.68258 -13.20666 -13.09305 -12.92112 -12.86858 -12.42596 -12.31224 -12.18029 -11.76591 -11.50398 -11.44506 -11.31885 -10.94403 -10.67911 -10.64363 -10.42746 -10.25678 -10.03596 -9.18237 -8.81676 -8.38632 -8.10903 -7.62089 -6.83588 -3.63345 2.33587 2.35989 2.86483 3.13598 3.22541 3.29402 3.42934 3.46007 3.81992 4.22123 4.44062 4.85886 4.96201 5.13013 5.19918 5.22476 5.32528 5.37326 5.42461 5.61941 5.70237 5.85424 5.90163 5.95408 6.09156 6.18105 6.27648 6.39180 6.42439 6.59555 7.07175 7.38848 7.45194 7.92480 8.00540 8.17230 8.68447 9.03265 9.36564 9.97416 10.21302 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.008661 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.750761 B = 3232.196800 C = 4441.966024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.102 0.898 4 C 0.414 3.586 5 O -0.539 6.539 6 N -0.418 5.418 7 C -0.474 4.474 8 H 0.097 0.903 9 C 0.193 3.807 10 N -0.709 5.709 11 Si 0.792 3.208 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.280 1.280 15 C 0.111 3.889 16 C -0.138 4.138 17 C 0.485 3.515 18 O -0.521 6.521 19 O -0.519 6.519 20 N -0.340 5.340 21 C 0.082 3.918 22 C -0.290 4.290 23 C 0.037 3.963 24 N -0.302 5.302 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.278 0.722 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.404 0.596 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 8.251 7.276 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.120 0.880 4 C 0.203 3.797 5 O -0.420 6.420 6 N -0.137 5.137 7 C -0.591 4.591 8 H 0.115 0.885 9 C -0.036 4.036 10 N -0.329 5.329 11 Si 0.612 3.388 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.206 1.206 15 C -0.013 4.013 16 C -0.177 4.177 17 C 0.327 3.673 18 O -0.409 6.409 19 O -0.331 6.331 20 N -0.122 5.122 21 C -0.065 4.065 22 C -0.320 4.320 23 C -0.149 4.149 24 N -0.123 5.123 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.262 0.738 34 H 0.184 0.816 35 H 0.159 0.841 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.049 8.148 6.376 10.786 hybrid contribution 0.646 0.117 0.731 0.982 sum -2.403 8.265 7.106 11.162 Atomic orbital electron populations 1.22120 0.91789 1.04195 1.03327 1.21253 0.95547 0.96712 0.83042 0.87996 1.19876 0.87273 0.87990 0.84590 1.90640 1.53794 1.15052 1.82545 1.43345 1.52478 1.07577 1.10317 1.17990 1.29837 1.25264 0.86001 0.88550 1.24922 0.97897 0.92425 0.88357 1.70559 1.33283 1.00698 1.28379 0.88149 0.88892 0.81525 0.80232 1.18477 1.20096 1.20627 1.21578 0.93636 0.82861 1.03271 1.22092 1.03460 0.86132 1.05976 1.23759 0.83389 0.88345 0.71762 1.90691 1.19921 1.85892 1.44431 1.84609 1.46625 1.19021 1.82805 1.48343 1.18541 1.24123 1.21148 1.22351 0.99791 0.90424 0.93955 1.21335 1.00013 1.06640 1.04023 1.23713 0.99161 0.94757 0.97254 1.77273 1.02500 1.25204 1.07319 0.91429 0.89443 0.90833 0.91111 0.89703 0.91104 0.88141 0.86326 0.73796 0.81597 0.84112 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.50 37.16 0.32 -1.96 16 2 C 0.14 2.64 2.88 -69.08 -0.20 2.44 16 3 H 0.10 1.78 5.93 -51.93 -0.31 1.47 16 4 C 0.41 9.77 6.34 -10.98 -0.07 9.70 16 5 O -0.54 -15.09 14.01 5.55 0.08 -15.01 16 6 N -0.42 -9.61 2.55 -114.81 -0.29 -9.90 16 7 C -0.47 -12.49 9.32 -14.94 -0.14 -12.63 16 8 H 0.10 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.19 5.30 3.17 -17.47 -0.06 5.24 16 10 N -0.71 -19.93 13.67 55.50 0.76 -19.17 16 11 Si 0.79 20.28 28.85 -169.99 -4.90 15.37 16 12 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.11 2.01 4.26 -4.04 -0.02 1.99 16 16 C -0.14 -2.24 5.98 -27.88 -0.17 -2.40 16 17 C 0.48 7.00 8.33 36.01 0.30 7.30 16 18 O -0.52 -8.49 16.74 -18.75 -0.31 -8.80 16 19 O -0.52 -6.08 13.42 -39.26 -0.53 -6.61 16 20 N -0.34 -6.68 3.23 -55.99 -0.18 -6.86 16 21 C 0.08 1.44 10.30 -17.22 -0.18 1.27 16 22 C -0.29 -4.70 10.80 -40.01 -0.43 -5.14 16 23 C 0.04 0.63 12.03 -17.36 -0.21 0.42 16 24 N -0.30 -6.09 12.57 30.62 0.39 -5.70 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 27 H 0.07 1.09 7.42 -51.93 -0.39 0.71 16 28 H 0.28 7.32 8.32 -40.82 -0.34 6.98 16 29 H 0.08 1.53 8.01 -51.93 -0.42 1.11 16 30 H 0.07 1.13 4.83 -51.93 -0.25 0.88 16 31 H 0.10 1.63 7.00 -51.93 -0.36 1.27 16 32 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.40 2.77 9.10 45.56 0.41 3.18 16 34 H 0.17 2.50 7.40 -52.49 -0.39 2.11 16 35 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -35.14 313.07 -4.40 -39.55 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.28 Total: 6.20 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.85 Total: 6.22 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.67 Total: -41.63 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.76 Total: -30.43 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.90 Total: 15.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.14 -4.40 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.008 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds