Wall clock time and date at job start Tue Mar 31 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47141 * 2 1 4 4 C 1.50710 * 109.46829 * 240.00072 * 2 1 3 5 5 O 1.21288 * 119.99761 * 264.51673 * 4 2 1 6 6 N 1.34777 * 119.99939 * 84.51168 * 4 2 1 7 7 C 1.37094 * 119.99945 * 174.37354 * 6 4 2 8 8 H 1.08003 * 119.99855 * 151.86248 * 7 6 4 9 9 C 1.38943 * 120.00308 * 331.86360 * 7 6 4 10 10 N 1.31419 * 120.00104 * 110.73564 * 9 7 6 11 11 Si 1.86800 * 120.00122 * 290.74232 * 9 7 6 12 12 H 1.48501 * 109.47035 * 359.97438 * 11 9 7 13 13 H 1.48489 * 109.47485 * 119.99557 * 11 9 7 14 14 H 1.48503 * 109.47086 * 239.99972 * 11 9 7 15 15 C 1.46502 * 119.99787 * 354.37761 * 6 4 2 16 16 C 1.53006 * 109.47085 * 91.89700 * 15 6 4 17 17 C 1.50704 * 109.46974 * 179.97438 * 16 15 6 18 18 O 1.20823 * 120.00241 * 359.97438 * 17 16 15 19 19 O 1.34230 * 119.99601 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47163 * 120.00135 * 2 1 3 21 21 C 1.34950 * 126.03777 * 35.00294 * 20 2 1 22 22 C 1.35315 * 107.74430 * 179.97438 * 21 20 2 23 23 C 1.39877 * 107.92083 * 0.02562 * 22 21 20 24 24 N 1.30834 * 108.19994 * 359.73552 * 23 22 21 25 25 H 1.08999 * 109.46937 * 295.02224 * 1 2 3 26 26 H 1.08997 * 109.47370 * 55.02163 * 1 2 3 27 27 H 1.09004 * 109.47363 * 175.02726 * 1 2 3 28 28 H 0.96996 * 119.99648 * 184.93936 * 10 9 7 29 29 H 1.09001 * 109.46945 * 211.89332 * 15 6 4 30 30 H 1.08999 * 109.47447 * 331.89401 * 15 6 4 31 31 H 1.09001 * 109.46928 * 299.99641 * 16 15 6 32 32 H 1.08999 * 109.47222 * 59.99563 * 16 15 6 33 33 H 0.96697 * 116.99415 * 179.97438 * 19 17 16 34 34 H 1.07993 * 126.12322 * 359.97438 * 21 20 2 35 35 H 1.08004 * 126.03985 * 179.97438 * 22 21 20 36 36 H 1.07992 * 125.89468 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2306 5 8 2.3290 -1.8851 -1.1739 6 7 2.1516 -0.0405 -2.3939 7 6 2.7159 -0.6531 -3.4829 8 1 2.4289 -0.3533 -4.4800 9 6 3.6569 -1.6595 -3.3039 10 7 3.3579 -2.9013 -3.6133 11 14 5.3470 -1.2477 -2.6231 12 1 5.4315 0.2108 -2.3571 13 1 5.5673 -1.9954 -1.3593 14 1 6.3860 -1.6310 -3.6126 15 6 1.6785 1.3423 -2.4947 16 6 2.8270 2.2994 -2.1691 17 6 2.3404 3.7219 -2.2734 18 8 1.1929 3.9471 -2.5774 19 8 3.1821 4.7386 -2.0295 20 7 2.0184 -0.6906 1.1961 21 6 1.4403 -1.7560 1.7894 22 6 2.1968 -2.0930 2.8595 23 6 3.2739 -1.2028 2.9226 24 7 3.1708 -0.3651 1.9229 25 1 -0.3633 0.4347 0.9312 26 1 -0.3634 0.5891 -0.8420 27 1 -0.3634 -1.0238 -0.0891 28 1 3.9876 -3.6138 -3.4219 29 1 1.3236 1.5320 -3.5078 30 1 0.8631 1.4997 -1.7887 31 1 3.1818 2.1097 -1.1560 32 1 3.6424 2.1420 -2.8751 33 1 2.8243 5.6334 -2.1093 34 1 0.5359 -2.2508 1.4678 35 1 2.0029 -2.9053 3.5443 36 1 4.0575 -1.2087 3.6657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589341953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:17 Heat of formation + Delta-G solvation = -42.003534 kcal Electronic energy + Delta-G solvation = -22910.679383 eV Core-core repulsion = 19397.243236 eV Total energy + Delta-G solvation = -3513.436147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17070 -41.30474 -40.32095 -37.22368 -36.49494 -35.62780 -34.44688 -32.00642 -31.00218 -30.42262 -27.37795 -26.19396 -24.76446 -22.63585 -21.92453 -21.73641 -20.75024 -19.30981 -18.98558 -18.11882 -17.86814 -17.11830 -16.91980 -16.80797 -16.06214 -15.73311 -15.29872 -15.23109 -14.69813 -14.48418 -14.29273 -14.22304 -14.18584 -13.64906 -13.46587 -13.18202 -13.11004 -13.00272 -12.75844 -12.53527 -12.49572 -12.09012 -11.99197 -11.64176 -11.60372 -10.96400 -10.47675 -10.13559 -9.77467 -9.33061 -8.92365 -5.66318 0.96104 1.15380 1.19326 1.34822 1.37570 1.53277 1.92437 2.02638 2.14394 2.31319 2.44659 3.11522 3.61432 3.76479 3.83125 3.91626 4.00292 4.04786 4.18320 4.34801 4.53167 4.62987 4.66692 4.75083 4.78451 4.89356 4.97266 5.12220 5.19263 5.36423 5.60825 5.80188 5.96198 6.16487 6.72413 6.83508 7.02112 7.12009 7.43250 8.09917 8.18721 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.008661 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.750761 B = 3232.196800 C = 4441.966024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 H 0.114 0.886 4 C 0.410 3.590 5 O -0.590 6.590 6 N -0.427 5.427 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.172 3.828 10 N -0.742 5.742 11 Si 0.829 3.171 12 H -0.250 1.250 13 H -0.309 1.309 14 H -0.265 1.265 15 C 0.113 3.887 16 C -0.134 4.134 17 C 0.501 3.499 18 O -0.539 6.539 19 O -0.512 6.512 20 N -0.358 5.358 21 C 0.066 3.934 22 C -0.288 4.288 23 C 0.036 3.964 24 N -0.346 5.346 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.281 0.719 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.429 0.571 34 H 0.184 0.816 35 H 0.172 0.828 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 9.903 8.780 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.132 0.868 4 C 0.200 3.800 5 O -0.475 6.475 6 N -0.146 5.146 7 C -0.608 4.608 8 H 0.102 0.898 9 C -0.055 4.055 10 N -0.363 5.363 11 Si 0.649 3.351 12 H -0.173 1.173 13 H -0.237 1.237 14 H -0.190 1.190 15 C -0.011 4.011 16 C -0.173 4.173 17 C 0.344 3.656 18 O -0.430 6.430 19 O -0.326 6.326 20 N -0.140 5.140 21 C -0.080 4.080 22 C -0.317 4.317 23 C -0.149 4.149 24 N -0.168 5.168 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.291 0.709 34 H 0.201 0.799 35 H 0.190 0.810 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.497 9.870 7.860 13.093 hybrid contribution 0.770 -0.382 0.330 0.921 sum -2.726 9.488 8.190 12.827 Atomic orbital electron populations 1.22131 0.88631 1.04482 1.05416 1.21237 0.97831 0.96244 0.80683 0.86831 1.20806 0.85650 0.87660 0.85932 1.90604 1.55643 1.17431 1.83815 1.43430 1.51986 1.09598 1.09598 1.17990 1.30172 1.25949 0.86703 0.89802 1.25314 0.99523 0.92436 0.88202 1.70602 1.34002 1.01296 1.30435 0.87642 0.87627 0.81394 0.78422 1.17320 1.23670 1.18973 1.21625 0.94835 0.80596 1.04006 1.21842 1.02231 0.87479 1.05782 1.23084 0.82977 0.88126 0.71373 1.90699 1.20660 1.86159 1.45436 1.84528 1.45919 1.20126 1.82015 1.48461 1.18937 1.25140 1.21478 1.22872 1.00688 0.90164 0.94303 1.21784 0.99152 1.06867 1.03921 1.24394 0.99838 0.93816 0.96855 1.77211 1.03534 1.27174 1.08837 0.88516 0.88199 0.91351 0.90868 0.89896 0.88703 0.87987 0.87253 0.70905 0.79881 0.81033 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 8.50 71.98 0.61 -3.38 16 2 C 0.15 5.29 2.88 44.25 0.13 5.42 16 3 H 0.11 3.77 5.93 -2.39 -0.01 3.75 16 4 C 0.41 19.28 6.34 87.66 0.56 19.84 16 5 O -0.59 -33.59 14.01 -3.06 -0.04 -33.63 16 6 N -0.43 -19.61 2.55 -635.52 -1.62 -21.23 16 7 C -0.49 -26.26 9.32 84.04 0.78 -25.48 16 8 H 0.08 4.59 8.06 -2.91 -0.02 4.57 16 9 C 0.17 9.62 3.17 84.92 0.27 9.89 16 10 N -0.74 -42.79 13.67 21.66 0.30 -42.49 16 11 Si 0.83 42.35 28.85 68.60 1.98 44.33 16 12 H -0.25 -12.16 7.11 99.48 0.71 -11.46 16 13 H -0.31 -17.46 7.11 99.48 0.71 -16.76 16 14 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 15 C 0.11 3.94 4.26 86.38 0.37 4.31 16 16 C -0.13 -4.16 5.98 29.85 0.18 -3.98 16 17 C 0.50 13.22 8.33 71.24 0.59 13.81 16 18 O -0.54 -16.22 16.74 21.97 0.37 -15.85 16 19 O -0.51 -10.38 13.42 -51.42 -0.69 -11.07 16 20 N -0.36 -13.61 3.23 -331.06 -1.07 -14.68 16 21 C 0.07 2.22 10.30 83.54 0.86 3.08 16 22 C -0.29 -8.66 10.80 21.99 0.24 -8.43 16 23 C 0.04 1.16 12.03 85.24 1.03 2.19 16 24 N -0.35 -13.56 12.57 -57.03 -0.72 -14.27 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.10 2.41 6.33 -2.39 -0.02 2.39 16 27 H 0.07 1.92 7.42 -2.38 -0.02 1.90 16 28 H 0.28 15.23 8.32 -92.71 -0.77 14.46 16 29 H 0.08 2.92 8.01 -2.39 -0.02 2.90 16 30 H 0.09 2.83 4.83 -2.39 -0.01 2.81 16 31 H 0.10 3.14 7.00 -2.39 -0.02 3.12 16 32 H 0.11 3.61 8.14 -2.39 -0.02 3.60 16 33 H 0.43 4.32 9.10 -74.06 -0.67 3.65 16 34 H 0.18 5.24 7.40 -2.91 -0.02 5.22 16 35 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.21 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -77.23 313.07 4.57 -72.66 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.45 Total: 18.97 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 5.61 Total: 17.27 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -3.11 Total: -92.68 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.37 Total: -60.55 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.98 Total: 44.33 kcal Total: -77.23 4.57 -72.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.660 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds