Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28455 * 125.06013 * 2 1 4 4 C 1.31995 * 110.48982 * 179.97438 * 3 2 1 5 5 C 1.47629 * 126.27988 * 179.97438 * 4 3 2 6 6 O 1.21480 * 120.00489 * 180.02562 * 5 4 3 7 7 O 1.34726 * 119.99959 * 0.02895 * 5 4 3 8 8 C 1.40960 * 107.44733 * 0.02562 * 4 3 2 9 9 C 1.36765 * 125.05864 * 179.97438 * 2 1 3 10 10 C 1.47216 * 126.64007 * 0.02562 * 9 2 1 11 11 O 1.21620 * 119.99971 * 5.77873 * 10 9 2 12 12 N 1.34772 * 119.99699 * 185.78396 * 10 9 2 13 13 C 1.46504 * 119.99717 * 185.14153 * 12 10 9 14 14 C 1.53003 * 109.47077 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46916 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46814 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00081 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99669 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99738 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46815 * 120.00329 * 20 18 16 23 23 H 1.48495 * 109.47192 * 240.00055 * 20 18 16 24 24 H 1.09000 * 109.46747 * 86.15694 * 1 2 3 25 25 H 1.08995 * 109.47139 * 206.15408 * 1 2 3 26 26 H 1.08998 * 109.47203 * 326.15761 * 1 2 3 27 27 H 0.96695 * 117.00282 * 179.97438 * 7 5 4 28 28 H 1.07995 * 127.27305 * 179.97438 * 8 4 3 29 29 H 0.96998 * 120.00729 * 5.13430 * 12 10 9 30 30 H 1.08992 * 109.47197 * 299.99879 * 13 12 10 31 31 H 1.09003 * 109.46792 * 60.00169 * 13 12 10 32 32 H 1.08992 * 109.47523 * 300.00309 * 14 13 12 33 33 H 1.09005 * 109.46345 * 60.00280 * 14 13 12 34 34 H 1.08999 * 109.47138 * 300.00160 * 15 14 13 35 35 H 1.08994 * 109.46949 * 60.00648 * 15 14 13 36 36 H 0.96999 * 120.00307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0515 0.0000 4 6 3.4804 0.7194 0.0006 5 6 4.6252 1.6515 0.0002 6 8 5.7605 1.2192 0.0003 7 8 4.4110 2.9816 -0.0002 8 6 3.5511 -0.6884 0.0003 9 6 2.2506 -1.1195 0.0005 10 6 1.7883 -2.5172 0.0006 11 8 0.6025 -2.7655 -0.1058 12 7 2.6792 -3.5216 0.1187 13 6 2.2339 -4.9127 0.0060 14 6 3.4331 -5.8475 0.1762 15 6 2.9679 -7.3003 0.0591 16 6 4.1491 -8.2211 0.2274 17 1 5.1330 -7.8110 0.4009 18 6 3.9733 -9.5870 0.1608 19 7 2.7751 -10.0863 -0.0501 20 14 5.4375 -10.7282 0.3686 21 1 6.6649 -9.9229 0.5924 22 1 5.2099 -11.6177 1.5358 23 1 5.6013 -11.5513 -0.8564 24 1 -0.3633 0.0689 -1.0254 25 1 -0.3633 -0.9224 0.4530 26 1 -0.3633 0.8535 0.5723 27 1 5.1917 3.5520 0.0000 28 1 4.4422 -1.2985 0.0003 29 1 3.6152 -3.3234 0.2783 30 1 1.4966 -5.1222 0.7809 31 1 1.7856 -5.0723 -0.9747 32 1 4.1701 -5.6379 -0.5990 33 1 3.8817 -5.6879 1.1568 34 1 2.2311 -7.5096 0.8346 35 1 2.5190 -7.4601 -0.9212 36 1 2.6515 -11.0472 -0.0973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594565679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -60.694750 kcal Electronic energy + Delta-G solvation = -20750.816091 eV Core-core repulsion = 17236.569433 eV Total energy + Delta-G solvation = -3514.246658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.10889 -40.20065 -39.43084 -36.41243 -35.69757 -33.96637 -33.35772 -31.98891 -30.79818 -28.25542 -26.92530 -24.57761 -23.93988 -22.51389 -21.14967 -20.86810 -20.13610 -18.40621 -18.05288 -16.94479 -16.58220 -16.47814 -16.26226 -15.76764 -15.29166 -15.18479 -14.51073 -14.33333 -13.90895 -13.86118 -13.73546 -13.15493 -12.80314 -12.34608 -11.91744 -11.90242 -11.85979 -11.50785 -11.20003 -10.95604 -10.82695 -10.62230 -10.29173 -9.94945 -9.76609 -9.61656 -9.50602 -9.16123 -9.00665 -8.41219 -6.05744 -4.08850 0.83670 1.04182 1.81188 2.59995 2.71564 2.99721 3.13743 3.28232 3.36137 3.39769 3.91003 4.34860 4.42134 4.71629 4.79370 4.86742 5.08903 5.16654 5.26254 5.30532 5.56334 5.65318 5.77935 6.03290 6.05005 6.11737 6.22817 6.49643 6.68558 6.91008 7.22269 7.41804 7.58544 7.61136 7.69671 7.92501 7.99241 8.33522 8.98018 9.55895 11.05571 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002882 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.575904 B = 9712.452215 C =10827.934054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.239 5.239 3 N -0.210 5.210 4 C -0.019 4.019 5 C 0.578 3.422 6 O -0.503 6.503 7 O -0.502 6.502 8 C -0.124 4.124 9 C -0.030 4.030 10 C 0.585 3.415 11 O -0.538 6.538 12 N -0.705 5.705 13 C 0.117 3.883 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.416 0.584 28 H 0.177 0.823 29 H 0.404 0.596 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 24.134 0.360 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.031 5.031 3 N -0.052 5.052 4 C -0.173 4.173 5 C 0.419 3.581 6 O -0.389 6.389 7 O -0.313 6.313 8 C -0.152 4.152 9 C -0.155 4.155 10 C 0.369 3.631 11 O -0.417 6.417 12 N -0.355 5.355 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.116 0.884 27 H 0.275 0.725 28 H 0.194 0.806 29 H 0.239 0.761 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.187 24.285 0.245 24.494 hybrid contribution 2.176 -0.856 0.128 2.342 sum -1.011 23.429 0.372 23.454 Atomic orbital electron populations 1.22595 0.71191 1.06803 1.05492 1.45896 1.08580 1.01547 1.47060 1.73714 1.02789 1.13167 1.15510 1.20455 0.89795 0.92221 1.14812 1.19133 0.86311 0.80695 0.71960 1.90950 1.23019 1.78635 1.46254 1.84629 1.43506 1.17690 1.85433 1.21953 0.96643 0.93006 1.03606 1.21301 0.90654 0.90450 1.13131 1.16809 0.86061 0.82597 0.77598 1.90794 1.15779 1.84389 1.50702 1.45965 1.11359 1.06849 1.71310 1.21800 0.99136 0.77224 1.02316 1.21926 0.95395 0.97606 1.01138 1.19033 0.96933 0.87736 0.97662 1.21234 0.94391 0.91125 1.49335 0.92511 1.25027 0.95770 0.98441 0.95218 1.69968 1.21302 1.12413 1.49618 0.86523 0.82845 0.80838 0.77725 1.19698 1.20998 1.20987 0.88894 0.86210 0.88385 0.72519 0.80595 0.76139 0.91112 0.91222 0.92434 0.92454 0.96208 0.96211 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.86 59.85 0.65 1.27 16 2 N -0.24 -2.65 3.75 -64.19 -0.24 -2.89 16 3 N -0.21 -2.47 11.97 33.32 0.40 -2.07 16 4 C -0.02 -0.22 7.13 -82.93 -0.59 -0.81 16 5 C 0.58 6.23 8.34 34.56 0.29 6.52 16 6 O -0.50 -6.42 17.70 -19.25 -0.34 -6.76 16 7 O -0.50 -3.99 13.44 -40.56 -0.55 -4.54 16 8 C -0.12 -1.36 10.22 -39.00 -0.40 -1.75 16 9 C -0.03 -0.35 6.90 -82.46 -0.57 -0.92 16 10 C 0.59 7.89 7.78 -12.62 -0.10 7.79 16 11 O -0.54 -8.52 14.65 5.26 0.08 -8.44 16 12 N -0.70 -9.14 5.53 -61.45 -0.34 -9.48 16 13 C 0.12 1.86 5.68 -4.04 -0.02 1.84 16 14 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.12 1.06 6.19 -51.93 -0.32 0.74 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.42 1.14 9.11 45.56 0.42 1.56 16 28 H 0.18 1.56 7.58 -52.49 -0.40 1.16 16 29 H 0.40 4.25 7.51 -40.82 -0.31 3.94 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -34.35 324.47 -5.35 -39.70 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.53 Total: 0.08 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.43 Total: -1.05 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.55 Total: -40.04 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.81 Total: -19.75 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.35 -5.35 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594565679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.992 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds