Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28455 * 125.06013 * 2 1 4 4 C 1.31995 * 110.48982 * 179.97438 * 3 2 1 5 5 C 1.47629 * 126.27988 * 179.97438 * 4 3 2 6 6 O 1.21480 * 120.00489 * 180.02562 * 5 4 3 7 7 O 1.34726 * 119.99959 * 0.02895 * 5 4 3 8 8 C 1.40960 * 107.44733 * 0.02562 * 4 3 2 9 9 C 1.36765 * 125.05864 * 179.97438 * 2 1 3 10 10 C 1.47216 * 126.64007 * 0.02562 * 9 2 1 11 11 O 1.21620 * 119.99971 * 5.77873 * 10 9 2 12 12 N 1.34772 * 119.99699 * 185.78396 * 10 9 2 13 13 C 1.46504 * 119.99717 * 185.14153 * 12 10 9 14 14 C 1.53003 * 109.47077 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46916 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46814 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00081 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99669 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99738 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47128 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46815 * 120.00329 * 20 18 16 23 23 H 1.48495 * 109.47192 * 240.00055 * 20 18 16 24 24 H 1.09000 * 109.46747 * 86.15694 * 1 2 3 25 25 H 1.08995 * 109.47139 * 206.15408 * 1 2 3 26 26 H 1.08998 * 109.47203 * 326.15761 * 1 2 3 27 27 H 0.96695 * 117.00282 * 179.97438 * 7 5 4 28 28 H 1.07995 * 127.27305 * 179.97438 * 8 4 3 29 29 H 0.96998 * 120.00729 * 5.13430 * 12 10 9 30 30 H 1.08992 * 109.47197 * 299.99879 * 13 12 10 31 31 H 1.09003 * 109.46792 * 60.00169 * 13 12 10 32 32 H 1.08992 * 109.47523 * 300.00309 * 14 13 12 33 33 H 1.09005 * 109.46345 * 60.00280 * 14 13 12 34 34 H 1.08999 * 109.47138 * 300.00160 * 15 14 13 35 35 H 1.08994 * 109.46949 * 60.00648 * 15 14 13 36 36 H 0.96999 * 120.00307 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0515 0.0000 4 6 3.4804 0.7194 0.0006 5 6 4.6252 1.6515 0.0002 6 8 5.7605 1.2192 0.0003 7 8 4.4110 2.9816 -0.0002 8 6 3.5511 -0.6884 0.0003 9 6 2.2506 -1.1195 0.0005 10 6 1.7883 -2.5172 0.0006 11 8 0.6025 -2.7655 -0.1058 12 7 2.6792 -3.5216 0.1187 13 6 2.2339 -4.9127 0.0060 14 6 3.4331 -5.8475 0.1762 15 6 2.9679 -7.3003 0.0591 16 6 4.1491 -8.2211 0.2274 17 1 5.1330 -7.8110 0.4009 18 6 3.9733 -9.5870 0.1608 19 7 2.7751 -10.0863 -0.0501 20 14 5.4375 -10.7282 0.3686 21 1 6.6649 -9.9229 0.5924 22 1 5.2099 -11.6177 1.5358 23 1 5.6013 -11.5513 -0.8564 24 1 -0.3633 0.0689 -1.0254 25 1 -0.3633 -0.9224 0.4530 26 1 -0.3633 0.8535 0.5723 27 1 5.1917 3.5520 0.0000 28 1 4.4422 -1.2985 0.0003 29 1 3.6152 -3.3234 0.2783 30 1 1.4966 -5.1222 0.7809 31 1 1.7856 -5.0723 -0.9747 32 1 4.1701 -5.6379 -0.5990 33 1 3.8817 -5.6879 1.1568 34 1 2.2311 -7.5096 0.8346 35 1 2.5190 -7.4601 -0.9212 36 1 2.6515 -11.0472 -0.0973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594565679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -86.463035 kcal Electronic energy + Delta-G solvation = -20751.933488 eV Core-core repulsion = 17236.569433 eV Total energy + Delta-G solvation = -3515.364055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.96626 -41.00826 -40.52828 -37.15956 -37.05959 -35.36606 -34.55776 -33.39133 -32.10539 -29.02592 -28.58953 -25.66025 -25.18813 -23.74767 -22.35379 -22.07162 -21.15978 -19.43037 -18.83527 -18.46868 -17.79305 -17.41909 -17.31930 -16.72229 -16.53039 -16.37673 -16.23691 -15.34716 -15.15452 -14.91094 -14.46605 -14.27607 -13.81536 -13.73742 -13.54416 -13.44792 -12.77558 -12.63532 -12.54116 -12.39480 -12.33894 -12.03955 -11.66205 -11.65619 -11.27097 -11.09991 -10.68923 -10.54018 -10.44346 -10.16341 -8.18337 -6.28817 -0.05483 0.17934 1.01603 1.42704 1.43649 1.56170 1.78522 1.83279 2.02596 2.19877 2.43704 3.10191 3.16116 3.39552 3.87715 4.14153 4.19321 4.24315 4.27206 4.29388 4.44836 4.57571 4.63364 4.93592 4.97027 4.98332 5.20018 5.26396 5.32318 5.46840 5.55046 5.74395 5.87212 6.23481 6.29449 6.49893 6.89304 6.94092 6.95456 7.40839 8.93822 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002882 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.575904 B = 9712.452215 C =10827.934054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.238 5.238 3 N -0.213 5.213 4 C -0.036 4.036 5 C 0.585 3.415 6 O -0.527 6.527 7 O -0.497 6.497 8 C -0.115 4.115 9 C -0.042 4.042 10 C 0.590 3.410 11 O -0.565 6.565 12 N -0.695 5.695 13 C 0.132 3.868 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.259 1.259 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.438 0.562 28 H 0.195 0.805 29 H 0.418 0.582 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.069 0.931 34 H -0.005 1.005 35 H -0.005 1.005 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 25.485 0.573 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.031 5.031 3 N -0.055 5.055 4 C -0.189 4.189 5 C 0.427 3.573 6 O -0.415 6.415 7 O -0.310 6.310 8 C -0.143 4.143 9 C -0.167 4.167 10 C 0.375 3.625 11 O -0.445 6.445 12 N -0.347 5.347 13 C 0.009 3.991 14 C -0.143 4.143 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.183 1.183 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.301 0.699 28 H 0.212 0.788 29 H 0.255 0.745 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.765 25.690 0.464 25.754 hybrid contribution 1.681 -1.180 0.057 2.055 sum -0.083 24.510 0.521 24.515 Atomic orbital electron populations 1.22811 0.69744 1.07359 1.06673 1.46202 1.09474 1.01141 1.46241 1.73702 1.03015 1.13302 1.15531 1.20706 0.90082 0.92814 1.15277 1.18990 0.85588 0.81350 0.71344 1.90940 1.23743 1.79210 1.47644 1.84583 1.45060 1.16732 1.84663 1.22218 0.96885 0.93100 1.02144 1.21037 0.91225 0.89736 1.14739 1.16926 0.85567 0.83210 0.76771 1.90787 1.16940 1.84894 1.51842 1.45682 1.12163 1.05545 1.71275 1.21379 0.97770 0.78454 1.01518 1.21630 0.96284 0.94153 1.02244 1.18944 0.95660 0.91523 0.95305 1.21730 0.95478 0.91914 1.48581 0.91612 1.25974 0.98612 1.00438 0.94980 1.70102 1.23634 1.12843 1.50939 0.85416 0.79561 0.78572 0.77605 1.18274 1.20690 1.20681 0.87664 0.87231 0.85964 0.69904 0.78770 0.74463 0.92119 0.92097 0.91182 0.91274 0.98698 0.98669 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.86 127.77 1.39 2.44 16 2 N -0.24 -4.94 3.75 -357.01 -1.34 -6.28 16 3 N -0.21 -4.65 11.97 -48.49 -0.58 -5.23 16 4 C -0.04 -0.77 7.13 42.27 0.30 -0.47 16 5 C 0.59 11.63 8.34 70.30 0.59 12.21 16 6 O -0.53 -12.68 17.70 19.90 0.35 -12.32 16 7 O -0.50 -6.86 13.44 -56.36 -0.76 -7.61 16 8 C -0.12 -2.32 10.22 22.65 0.23 -2.09 16 9 C -0.04 -0.93 6.90 40.45 0.28 -0.65 16 10 C 0.59 15.34 7.78 86.60 0.67 16.01 16 11 O -0.56 -17.69 14.65 -4.10 -0.06 -17.75 16 12 N -0.70 -17.09 5.53 -466.58 -2.58 -19.68 16 13 C 0.13 4.13 5.68 86.38 0.49 4.63 16 14 C -0.11 -3.75 5.27 30.60 0.16 -3.59 16 15 C 0.02 1.16 4.97 29.85 0.15 1.31 16 16 C -0.54 -29.29 9.11 25.60 0.23 -29.05 16 17 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 19 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 20 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.11 1.87 6.19 -2.39 -0.01 1.86 16 26 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.44 1.39 9.11 -74.06 -0.67 0.71 16 28 H 0.20 3.00 7.58 -2.91 -0.02 2.98 16 29 H 0.42 7.89 7.51 -92.71 -0.70 7.19 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H -0.01 -0.28 8.14 -2.39 -0.02 -0.29 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -73.46 324.47 2.07 -71.39 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -0.24 Total: 6.93 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 4.96 Total: 1.06 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -4.22 Total: -86.92 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.47 Total: -37.69 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.46 2.07 -71.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594565679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.073 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds