Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47013 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46808 * 120.00120 * 9 7 5 12 12 H 1.48501 * 109.46891 * 240.00253 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 3 17 17 C 1.34232 * 125.74431 * 124.99996 * 16 15 13 18 18 C 1.38117 * 107.40999 * 179.97438 * 17 16 15 19 19 C 1.47286 * 126.42669 * 179.97438 * 18 17 16 20 20 O 1.21524 * 119.99901 * 0.02562 * 19 18 17 21 21 O 1.34754 * 120.00069 * 180.02562 * 19 18 17 22 22 C 1.41343 * 107.14497 * 0.02562 * 18 17 16 23 23 N 1.30425 * 108.01449 * 359.73929 * 22 18 17 24 24 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 25 25 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 27 27 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 28 28 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 29 29 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 30 30 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 31 31 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 33 33 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 34 34 H 1.07998 * 126.29278 * 359.95384 * 17 16 15 35 35 H 0.96698 * 116.99991 * 180.02562 * 21 19 18 36 36 H 1.08000 * 125.99213 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.6010 1.2416 -2.4166 11 1 5.9212 1.4175 -4.7374 12 1 6.6203 3.3984 -3.5257 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2031 3.5858 17 6 1.4809 2.5330 4.5884 18 6 2.1641 3.3955 5.4231 19 6 1.6453 4.0153 6.6544 20 8 0.5109 3.7805 7.0214 21 8 2.4287 4.8426 7.3740 22 6 3.4541 3.5729 4.8734 23 7 3.5313 2.8565 3.7863 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0284 30 1 2.0954 3.1412 -1.1383 31 1 3.6750 3.5167 -4.4438 32 1 0.9446 1.0112 2.5303 33 1 2.6229 0.4185 2.5298 34 1 0.4659 2.1876 4.7182 35 1 2.0444 5.2251 8.1747 36 1 4.2399 4.1895 5.2843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = -43.045409 kcal Electronic energy + Delta-G solvation = -21583.432404 eV Core-core repulsion = 18069.951078 eV Total energy + Delta-G solvation = -3513.481326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48783 -39.74366 -39.03839 -36.03934 -35.48909 -33.56352 -32.74620 -30.50582 -30.25563 -28.67004 -26.62906 -23.96444 -23.18286 -22.83106 -21.25636 -20.47674 -18.87211 -17.93484 -17.44962 -16.94865 -16.43874 -16.06736 -15.62988 -15.30642 -14.91416 -14.50530 -14.36716 -13.86626 -13.58618 -13.51398 -13.11974 -12.92069 -12.72109 -12.14992 -12.06775 -11.73837 -11.60526 -11.29514 -11.19016 -10.98612 -10.84955 -10.62871 -10.34353 -10.18905 -9.85485 -9.68365 -9.12639 -8.75347 -8.48709 -7.83092 -6.09727 -4.14590 1.27212 2.08218 2.22175 3.09286 3.16453 3.21047 3.27386 3.35671 3.39644 3.67435 4.39020 4.50080 4.57306 4.73180 4.88404 4.98320 5.13576 5.18929 5.25404 5.38479 5.45625 5.58659 5.76587 5.85303 6.08852 6.32169 6.39903 6.43240 6.61210 6.93475 7.32706 7.40788 7.55951 7.86066 7.92622 8.15512 8.20552 8.76851 8.92906 9.50862 10.98531 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.003984 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.525785 B = 7025.941992 C = 7846.820804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.509 6.509 15 C 0.104 3.896 16 N -0.336 5.336 17 C 0.138 3.862 18 C -0.292 4.292 19 C 0.567 3.433 20 O -0.536 6.536 21 O -0.513 6.513 22 C 0.091 3.909 23 N -0.256 5.256 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.190 0.810 35 H 0.411 0.589 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -5.431 16.505 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.276 3.724 14 O -0.384 6.384 15 C -0.020 4.020 16 N -0.112 5.112 17 C -0.015 4.015 18 C -0.305 4.305 19 C 0.413 3.587 20 O -0.427 6.427 21 O -0.324 6.324 22 C -0.098 4.098 23 N -0.074 5.074 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.207 0.793 35 H 0.269 0.731 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.794 -5.400 14.906 16.563 hybrid contribution 0.098 0.301 0.716 0.782 sum -4.696 -5.099 15.621 17.090 Atomic orbital electron populations 1.22248 0.96521 1.01715 1.02438 1.21506 0.93653 0.84039 1.03076 1.48260 1.63699 1.13297 1.07372 1.19314 0.96519 0.93594 0.77603 1.21448 0.96808 1.32106 1.06284 0.92333 1.24932 0.97935 0.94819 0.96366 1.69936 1.35668 1.33354 1.14357 0.86428 0.84522 0.78133 0.78271 1.19756 1.20953 1.20824 1.20003 0.80204 0.87506 0.84672 1.90778 1.43898 1.17380 1.86318 1.21941 1.03785 0.91870 0.84432 1.48113 1.09905 1.35025 1.18190 1.22902 0.96754 0.94488 0.87309 1.19122 0.97733 1.12873 1.00763 1.19664 0.82109 0.75015 0.81930 1.90871 1.19864 1.61458 1.70519 1.84564 1.48254 1.59180 1.40415 1.24226 0.96404 0.97341 0.91823 1.77529 1.01382 1.11222 1.17279 0.91732 0.91825 0.93241 0.89366 0.91813 0.94739 0.93882 0.92711 0.85883 0.86506 0.79309 0.73112 0.78780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.10 1.40 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.54 2.46 -175.06 -0.43 -11.97 16 4 C 0.25 6.24 5.16 -5.20 -0.03 6.21 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.49 9.59 7.70 -10.98 -0.08 9.50 16 14 O -0.51 -12.67 15.28 5.56 0.08 -12.59 16 15 C 0.10 1.37 5.52 -5.19 -0.03 1.34 16 16 N -0.34 -4.96 3.37 -61.97 -0.21 -5.16 16 17 C 0.14 1.72 11.25 -16.55 -0.19 1.54 16 18 C -0.29 -3.87 6.13 -105.08 -0.64 -4.51 16 19 C 0.57 7.03 8.33 34.41 0.29 7.31 16 20 O -0.54 -7.79 17.69 -19.29 -0.34 -8.13 16 21 O -0.51 -4.75 13.28 -40.64 -0.54 -5.29 16 22 C 0.09 1.29 11.87 -16.97 -0.20 1.09 16 23 N -0.26 -4.41 11.56 30.87 0.36 -4.05 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.49 7.22 -51.93 -0.38 0.12 16 27 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 28 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 29 H 0.03 0.87 8.07 -51.92 -0.42 0.45 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.12 1.09 7.11 -51.93 -0.37 0.72 16 33 H 0.12 1.28 7.40 -51.93 -0.38 0.90 16 34 H 0.19 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.41 1.83 9.11 45.56 0.42 2.25 16 36 H 0.20 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -37.83 324.11 -4.93 -42.76 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.51 Total: -0.64 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -0.95 Total: 9.00 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.45 Total: -46.73 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.80 Total: -26.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.83 -4.93 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.283 kcal (2) G-P(sol) polarization free energy of solvation -37.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds