Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00025 * 2 1 4 4 C 1.53001 * 109.46780 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47037 * 65.00324 * 4 3 2 6 6 C 1.46501 * 119.99889 * 269.99868 * 5 4 3 7 7 C 1.50700 * 109.47127 * 269.99771 * 6 5 4 8 8 H 1.08005 * 119.99783 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00434 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99804 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00341 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47334 * 60.00176 * 11 9 7 13 13 H 1.48507 * 109.47370 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47123 * 299.99865 * 11 9 7 15 15 C 1.38572 * 120.00195 * 89.99679 * 5 4 3 16 16 C 1.39839 * 120.50176 * 184.99856 * 15 5 4 17 17 C 1.38304 * 118.44315 * 179.74826 * 16 15 5 18 18 N 1.32327 * 119.26741 * 0.25226 * 17 16 15 19 19 C 1.32428 * 120.96286 * 0.02562 * 18 17 16 20 20 C 1.48467 * 119.15072 * 179.97438 * 19 18 17 21 21 O 1.21377 * 120.00012 * 179.97438 * 20 19 18 22 22 O 1.34637 * 120.00166 * 359.97438 * 20 19 18 23 23 N 1.32486 * 121.69651 * 359.97156 * 19 18 17 24 24 H 1.08997 * 109.46770 * 299.99978 * 1 2 3 25 25 H 1.08994 * 109.46938 * 59.99831 * 1 2 3 26 26 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46893 * 60.00290 * 3 2 1 28 28 H 1.08996 * 109.47185 * 300.00078 * 3 2 1 29 29 H 1.08996 * 109.47524 * 304.99957 * 4 3 2 30 30 H 1.08998 * 109.46994 * 185.00207 * 4 3 2 31 31 H 1.08995 * 109.47404 * 30.00120 * 6 5 4 32 32 H 1.08998 * 109.47217 * 150.00105 * 6 5 4 33 33 H 0.97001 * 119.99962 * 179.97438 * 10 9 7 34 34 H 1.08002 * 120.78210 * 0.02936 * 16 15 5 35 35 H 1.07996 * 120.36534 * 180.23096 * 17 16 15 36 36 H 0.96699 * 117.00194 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3403 7 6 5.5016 -1.2983 -0.9413 8 1 6.2200 -0.5464 -0.6498 9 6 5.8610 -2.6293 -0.9474 10 7 4.9860 -3.5451 -1.3019 11 14 7.5904 -3.1322 -0.4521 12 1 7.8523 -2.6964 0.9431 13 1 7.7219 -4.6087 -0.5428 14 1 8.5724 -2.4915 -1.3634 15 6 4.2714 1.3545 -2.3501 16 6 4.5926 0.7699 -3.5792 17 6 4.8744 1.5993 -4.6495 18 7 4.8370 2.9110 -4.4789 19 6 4.5351 3.4366 -3.3014 20 6 4.5055 4.9137 -3.1550 21 8 4.2302 5.4119 -2.0829 22 8 4.7840 5.7007 -4.2113 23 7 4.2588 2.6782 -2.2509 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6887 1.8464 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1764 0.0902 31 1 3.3857 -1.3633 -0.6715 32 1 3.9138 -1.2123 -2.3645 33 1 5.2389 -4.4815 -1.3065 34 1 4.6155 -0.3040 -3.6913 35 1 5.1225 1.1810 -5.6138 36 1 4.7517 6.6564 -4.0674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599235821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = -90.009254 kcal Electronic energy + Delta-G solvation = -22087.852383 eV Core-core repulsion = 18572.334552 eV Total energy + Delta-G solvation = -3515.517831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19281 -40.83625 -39.21175 -37.72762 -37.19217 -35.00189 -34.02124 -32.92854 -31.07607 -28.73447 -27.28184 -26.93264 -25.26966 -24.59616 -23.03716 -22.11038 -19.43616 -18.91360 -18.54601 -18.27884 -17.63493 -17.14923 -17.02027 -16.89586 -16.60861 -16.15614 -15.74996 -15.46548 -15.31369 -14.82451 -14.47559 -14.28228 -13.61026 -13.56956 -13.20641 -12.82873 -12.76191 -12.63713 -12.63078 -12.28916 -12.24914 -12.13320 -11.96110 -11.63041 -11.51223 -10.94510 -10.65322 -10.59098 -10.29354 -8.83683 -8.16289 -6.35530 -0.55302 0.35882 1.31397 1.38785 1.41685 1.42466 1.50541 2.11340 2.41074 2.85626 2.94123 3.09556 3.17134 3.64950 3.81988 4.11471 4.15936 4.23554 4.36109 4.43189 4.49991 4.52264 4.56959 4.68664 4.81453 4.90342 5.07174 5.26320 5.27453 5.38728 5.60341 5.78909 6.04515 6.23164 6.32041 6.49243 6.73643 6.85687 7.13373 7.35634 8.84776 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.005991 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.619561 B = 4672.915406 C = 5991.577332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.058 3.942 4 C 0.124 3.876 5 N -0.568 5.568 6 C 0.273 3.727 7 C -0.550 4.550 8 H 0.048 0.952 9 C 0.024 3.976 10 N -0.918 5.918 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.426 3.574 16 C -0.260 4.260 17 C 0.170 3.830 18 N -0.527 5.527 19 C 0.311 3.689 20 C 0.571 3.429 21 O -0.510 6.510 22 O -0.478 6.478 23 N -0.553 5.553 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.212 0.788 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 11.550 -3.852 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.020 4.020 4 C 0.001 3.999 5 N -0.276 5.276 6 C 0.152 3.848 7 C -0.588 4.588 8 H 0.067 0.933 9 C -0.176 4.176 10 N -0.556 5.556 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.198 1.198 15 C 0.181 3.819 16 C -0.289 4.289 17 C 0.011 3.989 18 N -0.251 5.251 19 C 0.040 3.960 20 C 0.410 3.590 21 O -0.396 6.396 22 O -0.291 6.291 23 N -0.283 5.283 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.228 0.772 36 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -4.663 11.747 -3.348 13.074 hybrid contribution 0.563 -0.764 0.481 1.064 sum -4.100 10.983 -2.867 12.069 Atomic orbital electron populations 1.22867 0.79988 1.03374 1.00554 1.88004 1.21178 1.28281 1.95470 1.22933 0.93637 0.84661 1.00721 1.21535 0.92760 0.99447 0.86171 1.47049 1.65049 1.06713 1.08759 1.19051 0.95733 0.72690 0.97303 1.21661 0.97989 0.92486 1.46707 0.93349 1.25614 1.01001 0.96212 0.94809 1.70015 1.36076 1.01568 1.47987 0.85632 0.80074 0.77236 0.78853 1.19946 1.20397 1.19769 1.18712 0.87946 0.86847 0.88360 1.22752 1.08726 1.03850 0.93527 1.23470 0.88968 0.86953 0.99523 1.68398 1.18450 1.14997 1.23251 1.21128 0.96206 0.92815 0.85828 1.19463 0.72847 0.85402 0.81320 1.90877 1.44431 1.75209 1.29050 1.84584 1.81078 1.25448 1.37947 1.67473 1.23141 1.04710 1.32927 0.92405 0.94105 0.89188 0.90140 0.94333 0.90375 0.88398 0.94938 0.95741 0.92250 0.83251 0.77188 0.69765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.60 9.53 -148.98 -1.42 -16.02 16 3 C 0.06 1.88 6.28 71.98 0.45 2.34 16 4 C 0.12 4.62 5.89 86.38 0.51 5.13 16 5 N -0.57 -24.16 2.52 -707.66 -1.79 -25.94 16 6 C 0.27 13.36 4.85 85.63 0.42 13.78 16 7 C -0.55 -29.16 9.39 25.60 0.24 -28.92 16 8 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 9 C 0.02 1.29 5.46 84.65 0.46 1.75 16 10 N -0.92 -50.97 13.29 21.45 0.28 -50.69 16 11 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.43 17.20 7.39 133.28 0.98 18.18 16 16 C -0.26 -9.48 9.34 22.67 0.21 -9.27 16 17 C 0.17 5.10 11.29 84.63 0.96 6.06 16 18 N -0.53 -17.10 10.15 -189.41 -1.92 -19.02 16 19 C 0.31 10.91 7.59 137.66 1.05 11.96 16 20 C 0.57 17.16 8.36 70.55 0.59 17.75 16 21 O -0.51 -17.39 17.65 20.23 0.36 -17.03 16 22 O -0.48 -10.02 13.22 -55.45 -0.73 -10.75 16 23 N -0.55 -21.51 8.92 -186.71 -1.67 -23.18 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 3.01 8.07 -2.39 -0.02 2.99 16 30 H 0.10 3.53 7.33 -2.39 -0.02 3.51 16 31 H 0.03 1.74 7.11 -2.39 -0.02 1.73 16 32 H 0.02 1.25 6.04 -2.39 -0.01 1.24 16 33 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.15 5.71 6.16 -2.91 -0.02 5.70 16 35 H 0.21 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.44 3.86 9.11 -74.06 -0.67 3.18 16 Total: -1.00 -67.60 321.70 2.70 -64.90 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.45 Total: 12.69 kcal Atomic # 6 Polarization: 33.62 SS G_CDS: 7.11 Total: 40.74 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.09 Total: -118.83 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.80 Total: -43.80 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.60 2.70 -64.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599235821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.106 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds