Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46891 * 2 1 4 4 C 1.38289 * 119.92769 * 100.00543 * 3 2 1 5 5 C 1.38085 * 120.08466 * 180.23516 * 4 3 2 6 6 C 1.38948 * 119.95181 * 359.48710 * 5 4 3 7 7 N 1.39666 * 120.06684 * 180.27852 * 6 5 4 8 8 C 1.46503 * 120.00211 * 0.23111 * 7 6 5 9 9 C 1.53007 * 109.46856 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47157 * 304.99793 * 9 8 7 11 11 C 1.52999 * 109.46996 * 65.00185 * 9 8 7 12 12 C 1.52999 * 109.46576 * 184.99757 * 9 8 7 13 13 C 1.50705 * 109.46754 * 175.00003 * 12 9 8 14 14 H 1.08002 * 120.00065 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99659 * 180.02562 * 13 12 9 16 16 N 1.31509 * 120.00254 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99599 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47338 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46805 * 120.00442 * 17 15 13 20 20 H 1.48493 * 109.47357 * 240.00212 * 17 15 13 21 21 C 1.38868 * 119.86273 * 0.50921 * 6 5 4 22 22 C 1.38243 * 119.91017 * 359.74807 * 21 6 5 23 23 Cl 1.73603 * 119.97215 * 179.97438 * 22 21 6 24 24 H 1.08997 * 109.47115 * 60.00229 * 1 2 3 25 25 H 1.09003 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47157 * 299.99509 * 1 2 3 27 27 H 1.09004 * 109.46834 * 240.00242 * 2 1 3 28 28 H 1.08999 * 109.47399 * 120.00492 * 2 1 3 29 29 H 1.08002 * 119.95489 * 359.94985 * 4 3 2 30 30 H 1.08002 * 120.02213 * 179.74694 * 5 4 3 31 31 H 0.96999 * 119.99692 * 180.23309 * 7 6 5 32 32 H 1.08996 * 109.46971 * 300.00023 * 8 7 6 33 33 H 1.08991 * 109.46803 * 60.00216 * 8 7 6 34 34 H 1.08996 * 109.46984 * 299.99933 * 11 9 8 35 35 H 1.09002 * 109.47079 * 59.99765 * 11 9 8 36 36 H 1.08999 * 109.47076 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47688 * 295.00284 * 12 9 8 38 38 H 1.08999 * 109.47083 * 55.00673 * 12 9 8 39 39 H 0.97007 * 120.00122 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.04213 * 179.72561 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0019 1.1803 5 6 2.9149 3.3052 1.1848 6 6 2.9558 4.0301 0.0001 7 7 3.4223 5.3465 0.0010 8 6 3.8740 5.9628 1.2510 9 6 4.3315 7.3968 0.9764 10 1 5.0910 7.3925 0.1947 11 6 3.1354 8.2352 0.5208 12 6 4.9186 7.9984 2.2548 13 6 5.4803 9.3644 1.9551 14 1 5.4238 9.7636 0.9532 15 6 6.0665 10.1043 2.9601 16 7 6.1358 9.6179 4.1800 17 14 6.7634 11.7972 2.5885 18 1 6.5618 12.1109 1.1511 19 1 6.0667 12.8124 3.4188 20 1 8.2151 11.8143 2.9005 21 6 2.5272 3.4445 -1.1839 22 6 2.0665 2.1412 -1.1811 23 17 1.5298 1.4078 -2.6602 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.4303 1.4372 2.1004 30 1 3.2437 3.7594 2.1079 31 1 3.4472 5.8528 -0.8260 32 1 3.0531 5.9739 1.9680 33 1 4.7055 5.3885 1.6594 34 1 2.7171 7.8066 -0.3899 35 1 2.3759 8.2395 1.3026 36 1 3.4612 9.2569 0.3256 37 1 4.1361 8.0847 3.0085 38 1 5.7133 7.3527 2.6284 39 1 6.5485 10.1384 4.8870 40 1 2.5536 4.0068 -2.1056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652424039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -15.634287 kcal Electronic energy + Delta-G solvation = -18993.011239 eV Core-core repulsion = 16024.968057 eV Total energy + Delta-G solvation = -2968.043182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70141 -37.22870 -36.28396 -34.74192 -32.93818 -31.76483 -30.75018 -28.34229 -26.89385 -25.86639 -23.53056 -23.15631 -22.23224 -20.63660 -19.37421 -17.30346 -16.65686 -16.03967 -15.47936 -14.76948 -14.68137 -14.47268 -14.26711 -13.91477 -13.58068 -13.37651 -13.15134 -12.68101 -12.50833 -12.27614 -12.11916 -11.71910 -11.50024 -11.43426 -11.28878 -10.96334 -10.95754 -10.85609 -10.71807 -10.43817 -10.39832 -10.00692 -9.65053 -9.36383 -9.08990 -8.77398 -8.41803 -7.26343 -6.06138 -4.08066 1.25973 1.51738 2.10740 3.26925 3.34993 3.38073 3.64801 3.74648 4.41176 4.73308 4.79992 5.02911 5.23051 5.28646 5.29998 5.39224 5.41944 5.52230 5.60744 5.62335 5.78952 5.80187 5.86705 5.89965 6.10779 6.13360 6.19946 6.29262 6.34656 6.37421 6.53959 6.68340 6.81285 6.94317 6.98834 7.44448 7.56959 7.69976 7.86036 7.92324 8.34531 8.97766 9.56075 11.05274 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039922 B = 0.002803 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.193781 B = 9986.521002 C =10458.326021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.056 4.056 5 C -0.192 4.192 6 C 0.234 3.766 7 N -0.736 5.736 8 C 0.125 3.875 9 C -0.096 4.096 10 H 0.062 0.938 11 C -0.132 4.132 12 C 0.030 3.970 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.197 4.197 22 C 0.019 3.981 23 Cl -0.079 7.079 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.399 0.601 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -17.204 -9.086 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.215 4.215 6 C 0.128 3.872 7 N -0.363 5.363 8 C 0.001 3.999 9 C -0.115 4.115 10 H 0.081 0.919 11 C -0.190 4.190 12 C -0.008 4.008 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.221 4.221 22 C -0.009 4.009 23 Cl -0.051 7.051 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.234 0.766 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.568 -17.115 -8.843 21.509 hybrid contribution 0.447 1.220 -0.510 1.396 sum -9.121 -15.895 -9.353 20.574 Atomic orbital electron populations 1.21758 0.95099 1.01337 1.02273 1.20399 0.96010 0.92347 1.02568 1.19388 1.06528 0.97220 0.91805 1.20709 0.95909 0.94161 0.96715 1.20812 1.07975 0.95352 0.97391 1.17717 0.91255 0.85341 0.92922 1.45049 1.69358 1.10371 1.11497 1.21685 0.98314 0.94805 0.85066 1.21446 0.97213 0.91043 1.01791 0.91917 1.21727 0.97516 1.00864 0.98867 1.19084 0.95715 0.95462 0.90491 1.21221 1.37603 1.01336 0.95302 0.92498 1.25014 0.96151 0.98170 0.95122 1.69964 1.44775 1.37743 1.00912 0.86560 0.78792 0.84413 0.78387 1.19772 1.21026 1.21018 1.20336 1.09140 0.94771 0.97803 1.20371 1.00756 0.93202 0.86532 1.98336 1.88724 1.83015 1.34984 0.92425 0.92770 0.92699 0.91139 0.91299 0.85532 0.85313 0.76579 0.92417 0.92352 0.95100 0.93436 0.91702 0.96284 0.96424 0.93012 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.84 37.16 0.37 -0.91 16 2 C -0.08 -0.70 5.52 -27.88 -0.15 -0.86 16 3 C -0.15 -1.67 5.14 -104.55 -0.54 -2.21 16 4 C -0.06 -0.64 9.66 -39.62 -0.38 -1.02 16 5 C -0.19 -2.49 9.31 -39.37 -0.37 -2.86 16 6 C 0.23 3.16 6.65 -83.79 -0.56 2.60 16 7 N -0.74 -10.19 5.46 -58.64 -0.32 -10.51 16 8 C 0.12 1.98 4.30 -4.04 -0.02 1.96 16 9 C -0.10 -1.79 2.37 -90.62 -0.22 -2.01 16 10 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 11 C -0.13 -2.31 8.88 37.16 0.33 -1.98 16 12 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 13 C -0.52 -13.88 8.41 -34.44 -0.29 -14.17 16 14 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C -0.20 -2.49 9.68 -39.35 -0.38 -2.87 16 22 C 0.02 0.23 6.31 -39.53 -0.25 -0.02 16 23 Cl -0.08 -0.87 26.61 -51.86 -1.38 -2.25 16 24 H 0.06 0.54 7.25 -51.93 -0.38 0.16 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.65 7.35 -51.93 -0.38 0.27 16 28 H 0.07 0.56 8.00 -51.93 -0.42 0.14 16 29 H 0.13 1.17 8.03 -52.49 -0.42 0.74 16 30 H 0.13 1.64 6.73 -52.49 -0.35 1.29 16 31 H 0.40 5.11 7.67 -40.82 -0.31 4.80 16 32 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 33 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 34 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -28.22 339.51 -9.83 -38.05 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.29 Total: 1.13 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -2.68 Total: -22.26 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.42 Total: -35.93 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.38 Total: -2.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.22 -9.83 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652424039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.418 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds