Wall clock time and date at job start Tue Mar 31 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38313 * 119.92228 * 2 1 4 4 C 1.38167 * 120.06055 * 179.72905 * 3 2 1 5 5 Cl 1.73603 * 120.04606 * 180.27535 * 4 3 2 6 6 C 1.39028 * 119.90733 * 0.52102 * 4 3 2 7 7 N 1.39751 * 120.08168 * 179.72953 * 6 4 3 8 8 C 1.46500 * 120.00104 * 180.02562 * 7 6 4 9 9 C 1.52992 * 109.46994 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47338 * 305.00045 * 9 8 7 11 11 C 1.52998 * 109.47251 * 65.00124 * 9 8 7 12 12 C 1.53003 * 109.47092 * 185.00324 * 9 8 7 13 13 C 1.50704 * 109.47363 * 174.99952 * 12 9 8 14 14 H 1.08008 * 119.99398 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00355 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00075 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99683 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47213 * 90.00206 * 17 15 13 19 19 H 1.48504 * 109.46931 * 209.99850 * 17 15 13 20 20 H 1.48496 * 109.47293 * 330.00065 * 17 15 13 21 21 C 1.38846 * 119.84269 * 359.75236 * 6 4 3 22 22 C 1.38162 * 119.93585 * 359.97438 * 21 6 4 23 23 C 1.50698 * 119.95113 * 179.97438 * 22 21 6 24 24 H 1.09002 * 109.47152 * 269.72582 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72682 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72663 * 1 2 3 27 27 H 1.08004 * 119.96884 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99510 * 0.02562 * 7 6 4 29 29 H 1.08998 * 109.47117 * 300.00627 * 8 7 6 30 30 H 1.09002 * 109.46957 * 60.00332 * 8 7 6 31 31 H 1.09001 * 109.47263 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47108 * 300.00149 * 11 9 8 33 33 H 1.09001 * 109.47082 * 60.00245 * 11 9 8 34 34 H 1.08998 * 109.47091 * 294.99557 * 12 9 8 35 35 H 1.08994 * 109.47297 * 55.00073 * 12 9 8 36 36 H 0.96999 * 119.99666 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.03103 * 180.02562 * 21 6 4 38 38 H 1.08996 * 109.47698 * 269.98117 * 23 22 21 39 39 H 1.09005 * 109.47307 * 29.98111 * 23 22 21 40 40 H 1.09005 * 109.46847 * 149.97662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5786 1.2021 0.0057 5 17 4.4442 2.7069 0.0129 6 6 4.2748 -0.0013 0.0004 7 7 5.6723 -0.0022 0.0004 8 6 6.4040 -1.2713 -0.0058 9 6 7.9083 -0.9926 -0.0038 10 1 8.1586 -0.3426 -0.8422 11 6 8.2983 -0.3069 1.3072 12 6 8.6716 -2.3120 -0.1359 13 6 10.1469 -2.0290 -0.2575 14 1 10.5043 -1.0099 -0.2416 15 6 11.0403 -3.0709 -0.3879 16 7 12.3277 -2.8239 -0.4935 17 14 10.4221 -4.8335 -0.4147 18 1 10.1315 -5.2349 -1.8146 19 1 11.4607 -5.7309 0.1522 20 1 9.1828 -4.9358 0.3970 21 6 3.5782 -1.2024 -0.0053 22 6 2.1966 -1.1982 -0.0052 23 6 1.4403 -2.5016 -0.0120 24 1 -0.3633 -0.0049 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.6552 2.1331 -0.0004 28 1 6.1577 0.8376 0.0044 29 1 6.1403 -1.8471 0.8814 30 1 6.1404 -1.8384 -0.8985 31 1 9.3701 -0.1087 1.3088 32 1 7.7545 0.6330 1.4013 33 1 8.0481 -0.9570 2.1456 34 1 8.4911 -2.9262 0.7462 35 1 8.3291 -2.8425 -1.0243 36 1 12.9562 -3.5570 -0.5856 37 1 4.1159 -2.1390 -0.0090 38 1 1.2575 -2.8104 -1.0413 39 1 2.0278 -3.2654 0.4975 40 1 0.4883 -2.3720 0.5029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658160696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:26 Heat of formation + Delta-G solvation = -12.641391 kcal Electronic energy + Delta-G solvation = -19329.401353 eV Core-core repulsion = 16361.487953 eV Total energy + Delta-G solvation = -2967.913400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87236 -37.14280 -36.48910 -34.57142 -32.52768 -32.13853 -30.90828 -27.79548 -27.28416 -26.66609 -24.85799 -22.85391 -21.68363 -20.61149 -19.29918 -17.13553 -16.83807 -16.29694 -15.44996 -14.91466 -14.53317 -14.27478 -14.14428 -13.91279 -13.47571 -13.24545 -13.01906 -12.96729 -12.67621 -12.42249 -12.26253 -12.20525 -11.90665 -11.57894 -11.24454 -11.17680 -11.06975 -10.83163 -10.82121 -10.51665 -10.11632 -9.80844 -9.71482 -9.62327 -9.16236 -8.66371 -8.57274 -7.26005 -6.07450 -4.05576 1.20129 1.48975 2.23500 3.27787 3.35733 3.38023 3.55280 3.64060 4.41767 4.68928 4.73268 5.05707 5.11413 5.15883 5.25512 5.35386 5.44101 5.49808 5.51879 5.52358 5.60208 5.68389 5.76332 5.85010 5.94620 6.04544 6.12450 6.19802 6.24812 6.30125 6.57485 6.64700 6.78387 6.81180 6.97169 7.14988 7.31988 7.37111 7.74314 7.80510 8.49762 8.96960 9.54589 11.05806 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.003859 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.772819 B = 7254.461635 C = 8400.194771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.150 4.150 3 C -0.058 4.058 4 C -0.123 4.123 5 Cl -0.080 7.080 6 C 0.237 3.763 7 N -0.733 5.733 8 C 0.122 3.878 9 C -0.088 4.088 10 H 0.068 0.932 11 C -0.134 4.134 12 C -0.005 4.005 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.190 4.190 22 C -0.031 4.031 23 C -0.117 4.117 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.403 0.597 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.537 5.239 1.590 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.152 4.152 3 C -0.077 4.077 4 C -0.154 4.154 5 Cl -0.051 7.051 6 C 0.129 3.871 7 N -0.361 5.361 8 C -0.002 4.002 9 C -0.107 4.107 10 H 0.087 0.913 11 C -0.192 4.192 12 C -0.043 4.043 13 C -0.555 4.555 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.213 4.213 22 C -0.032 4.032 23 C -0.174 4.174 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.240 0.760 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.143 5.084 1.576 23.747 hybrid contribution 0.272 -0.459 -0.063 0.537 sum -22.872 4.625 1.512 23.384 Atomic orbital electron populations 1.20653 0.91186 1.02340 1.01765 1.19338 0.95779 0.91768 1.08339 1.20584 0.91092 0.98191 0.97807 1.20281 0.92346 0.85184 1.17595 1.98331 1.77109 1.32116 1.97550 1.17590 0.84610 0.92030 0.92889 1.45127 1.01755 1.09639 1.79549 1.21706 0.92980 0.84791 1.00679 1.21249 0.90681 1.00292 0.98438 0.91314 1.21734 1.02422 0.98242 0.96760 1.19561 0.96324 0.92040 0.96384 1.21081 0.89078 0.95214 1.50099 0.90808 1.25019 0.94762 0.99071 0.94632 1.69908 1.01563 1.32179 1.50541 0.86805 0.78877 0.85102 0.78646 1.20310 1.21404 1.19022 1.20495 0.93488 0.96254 1.11043 1.19567 0.92872 0.94851 0.95928 1.20852 0.99987 0.94104 1.02446 0.91840 0.91660 0.92052 0.85514 0.76038 0.92352 0.92331 0.91139 0.94830 0.93459 0.96332 0.96892 0.92722 0.85147 0.90934 0.91387 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.19 36.01 0.33 -0.46 16 2 C -0.15 -1.60 5.88 -104.59 -0.62 -2.21 16 3 C -0.06 -0.66 9.47 -39.58 -0.37 -1.03 16 4 C -0.12 -1.61 6.34 -39.31 -0.25 -1.86 16 5 Cl -0.08 -1.00 27.60 -51.86 -1.43 -2.43 16 6 C 0.24 3.31 6.65 -83.73 -0.56 2.75 16 7 N -0.73 -10.72 5.42 -58.60 -0.32 -11.04 16 8 C 0.12 1.91 4.30 -4.05 -0.02 1.89 16 9 C -0.09 -1.64 2.37 -90.62 -0.22 -1.85 16 10 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 11 C -0.13 -2.41 8.88 37.16 0.33 -2.08 16 12 C -0.01 -0.12 3.52 -27.88 -0.10 -0.22 16 13 C -0.52 -14.21 8.96 -34.44 -0.31 -14.52 16 14 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 17 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 21 C -0.19 -2.45 8.96 -39.38 -0.35 -2.80 16 22 C -0.03 -0.35 5.88 -104.65 -0.62 -0.96 16 23 C -0.12 -0.98 9.18 36.00 0.33 -0.65 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 26 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 28 H 0.40 5.87 6.33 -40.82 -0.26 5.61 16 29 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 30 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 31 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 32 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.13 1.62 6.73 -52.49 -0.35 1.27 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.07 0.49 6.69 -51.93 -0.35 0.14 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -29.46 333.90 -9.26 -38.72 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.14 Total: 2.03 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -2.51 Total: -22.21 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.46 Total: -37.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.43 Total: -2.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.46 -9.26 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658160696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds