Wall clock time and date at job start Tue Mar 31 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47509 * 2 1 4 4 C 1.53006 * 109.47180 * 119.99837 * 2 1 3 5 5 N 1.46896 * 109.46630 * 58.89220 * 4 2 1 6 6 C 1.46895 * 111.00656 * 78.37279 * 5 4 2 7 7 C 1.50695 * 109.47381 * 282.67429 * 6 5 4 8 8 H 1.08004 * 119.99785 * 354.42328 * 7 6 5 9 9 C 1.37877 * 120.00259 * 174.41411 * 7 6 5 10 10 N 1.31511 * 120.00292 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99980 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47105 * 89.99671 * 11 9 7 13 13 H 1.48499 * 109.47137 * 209.99809 * 11 9 7 14 14 H 1.48506 * 109.47155 * 329.99514 * 11 9 7 15 15 C 1.46907 * 110.99862 * 202.32994 * 5 4 2 16 16 C 1.50695 * 109.47315 * 72.01765 * 15 5 4 17 17 C 1.38236 * 120.00907 * 251.84107 * 16 15 5 18 18 C 1.38217 * 120.01645 * 179.97438 * 17 16 15 19 19 C 1.38267 * 120.02592 * 0.03985 * 18 17 16 20 20 C 1.38194 * 120.01012 * 359.97438 * 19 18 17 21 21 C 1.38333 * 120.00447 * 71.56206 * 16 15 5 22 22 Cl 1.73592 * 120.01398 * 359.97438 * 21 16 15 23 23 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46895 * 300.00133 * 1 2 3 25 25 H 1.08993 * 109.47455 * 59.99626 * 1 2 3 26 26 H 1.08997 * 109.46914 * 240.00136 * 2 1 3 27 27 H 1.08997 * 109.47817 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47032 * 300.00678 * 3 2 1 29 29 H 1.09010 * 109.47151 * 60.00023 * 3 2 1 30 30 H 1.08989 * 109.47054 * 298.88961 * 4 2 1 31 31 H 1.08997 * 109.46953 * 178.88450 * 4 2 1 32 32 H 1.09003 * 109.47083 * 42.67817 * 6 5 4 33 33 H 1.09004 * 109.47390 * 162.66945 * 6 5 4 34 34 H 0.96997 * 120.00620 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47047 * 192.02209 * 15 5 4 36 36 H 1.09002 * 109.46570 * 312.01650 * 15 5 4 37 37 H 1.08003 * 119.99105 * 359.97438 * 17 16 15 38 38 H 1.07991 * 119.99043 * 180.02562 * 18 17 16 39 39 H 1.08004 * 119.99393 * 179.97438 * 19 18 17 40 40 H 1.08004 * 120.00179 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5285 -2.0982 1.2627 6 6 2.2977 -2.9545 0.3501 7 6 1.8671 -2.6901 -1.0696 8 1 1.0383 -2.0266 -1.2678 9 6 2.5314 -3.2949 -2.1155 10 7 2.1559 -3.0638 -3.3545 11 14 3.9646 -4.4428 -1.7728 12 1 3.4607 -5.8309 -1.6163 13 1 4.9237 -4.3891 -2.9053 14 1 4.6491 -4.0209 -0.5242 15 6 1.5293 -2.6468 2.6255 16 6 0.4394 -1.9894 3.4323 17 6 0.7645 -1.0834 4.4245 18 6 -0.2350 -0.4799 5.1642 19 6 -1.5605 -0.7826 4.9129 20 6 -1.8867 -1.6884 3.9215 21 6 -0.8868 -2.2881 3.1763 22 17 -1.2961 -3.4198 1.9252 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6930 -0.1961 2.1391 31 1 3.1298 -0.7386 1.2393 32 1 3.3602 -2.7347 0.4545 33 1 2.1176 -4.0012 0.5955 34 1 2.6229 -3.4895 -4.0904 35 1 1.3530 -3.7216 2.5845 36 1 2.4945 -2.4545 3.0939 37 1 1.7997 -0.8470 4.6216 38 1 0.0194 0.2282 5.9389 39 1 -2.3411 -0.3110 5.4915 40 1 -2.9222 -1.9244 3.7250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:54 Heat of formation + Delta-G solvation = 15.184696 kcal Electronic energy + Delta-G solvation = -20678.178267 eV Core-core repulsion = 17711.471496 eV Total energy + Delta-G solvation = -2966.706771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.40611 -37.28559 -35.92949 -33.89000 -32.63270 -31.18182 -30.53174 -27.77513 -26.36646 -26.09828 -23.67946 -22.52707 -21.24684 -20.40593 -19.03663 -17.00285 -16.53277 -15.59041 -15.27595 -14.94421 -14.45893 -14.18481 -13.69173 -13.63539 -13.26334 -12.93873 -12.69549 -12.54413 -12.32645 -11.85251 -11.61906 -11.43972 -11.24089 -11.18246 -11.15207 -11.03083 -10.49934 -10.41637 -10.27280 -10.06447 -9.96338 -9.84978 -9.57694 -8.98676 -8.78627 -8.46102 -8.40609 -7.28478 -5.98495 -3.92987 1.32796 1.37198 2.61340 3.30629 3.38252 3.39814 3.73852 4.46530 4.76557 4.88975 4.95598 5.08588 5.31321 5.33885 5.49714 5.64694 5.72164 5.78325 5.82898 5.94598 6.04560 6.11886 6.14404 6.30417 6.33717 6.36475 6.46559 6.54514 6.57570 6.63254 6.77039 6.82505 6.90734 6.93060 7.04899 7.37196 7.51738 7.71902 7.96905 8.11681 8.73629 9.15158 9.63773 11.13567 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.006340 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.414235 B = 4415.621926 C = 4899.106425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C -0.142 4.142 4 C 0.077 3.923 5 N -0.511 5.511 6 C 0.161 3.839 7 C -0.499 4.499 8 H 0.097 0.903 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.866 3.134 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.086 3.914 16 C -0.057 4.057 17 C -0.108 4.108 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.009 4.009 22 Cl -0.046 7.046 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.034 0.966 26 H 0.116 0.884 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.022 0.978 32 H -0.009 1.009 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 4.804 15.878 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C -0.200 4.200 4 C -0.051 4.051 5 N -0.234 5.234 6 C 0.035 3.965 7 C -0.537 4.537 8 H 0.115 0.885 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.694 3.306 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.042 4.042 16 C -0.059 4.059 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.037 4.037 22 Cl -0.016 7.016 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.910 4.644 15.391 16.809 hybrid contribution 1.636 -0.704 0.284 1.803 sum -3.274 3.940 15.675 16.491 Atomic orbital electron populations 1.21582 0.95550 1.02690 0.98326 1.21412 0.96188 0.93734 1.00900 1.21826 1.00160 0.97675 1.00359 1.21998 0.95931 0.89557 0.97647 1.61920 1.55659 1.01951 1.03865 1.20308 0.90853 0.91993 0.93370 1.21217 1.17137 1.28012 0.87380 0.88548 1.24888 0.96906 0.96405 0.95138 1.69880 1.41477 1.44294 0.98329 0.87007 0.83530 0.82072 0.77979 1.20400 1.21436 1.19390 1.21081 0.93641 0.99076 0.90404 1.19864 0.93498 0.96777 0.95746 1.21028 0.99546 0.96383 0.95684 1.21103 0.92907 1.00160 0.99968 1.21003 0.96489 0.98087 0.97979 1.21049 0.98799 0.97654 0.96230 1.20827 0.93681 0.96200 0.92964 1.98412 1.93543 1.58715 1.50966 0.90573 0.95347 0.94735 0.86640 0.93654 0.93235 0.94208 0.93163 0.95973 0.99088 0.96259 0.92851 0.89936 0.94907 0.85826 0.86050 0.85792 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.54 37.16 0.32 -2.06 16 2 C -0.10 -2.02 2.42 -90.62 -0.22 -2.24 16 3 C -0.14 -2.34 9.19 37.16 0.34 -2.00 16 4 C 0.08 1.43 4.29 -3.82 -0.02 1.42 16 5 N -0.51 -10.08 3.22 -237.53 -0.76 -10.84 16 6 C 0.16 3.74 3.87 -4.98 -0.02 3.72 16 7 C -0.50 -13.42 7.75 -34.44 -0.27 -13.68 16 8 H 0.10 2.78 5.37 -52.48 -0.28 2.50 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 11 Si 0.87 21.25 27.58 -169.99 -4.69 16.56 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.38 6.38 56.52 0.36 -6.02 16 15 C 0.09 1.45 4.41 -4.97 -0.02 1.43 16 16 C -0.06 -0.86 4.67 -104.59 -0.49 -1.35 16 17 C -0.11 -1.37 8.86 -39.59 -0.35 -1.72 16 18 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 19 C -0.12 -1.29 10.05 -39.59 -0.40 -1.68 16 20 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 16 21 C -0.01 -0.14 6.31 -39.50 -0.25 -0.39 16 22 Cl -0.05 -0.77 27.45 -51.86 -1.42 -2.19 16 23 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 24 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.12 2.73 5.15 -51.93 -0.27 2.46 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.05 0.85 6.46 -51.94 -0.34 0.52 16 31 H 0.02 0.42 7.66 -51.93 -0.40 0.03 16 32 H -0.01 -0.20 6.33 -51.93 -0.33 -0.53 16 33 H 0.02 0.46 7.32 -51.93 -0.38 0.08 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 1.42 7.27 -51.93 -0.38 1.04 16 36 H 0.03 0.51 7.83 -51.93 -0.41 0.11 16 37 H 0.12 1.39 7.98 -52.48 -0.42 0.97 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -28.87 330.00 -9.50 -38.37 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.11 Total: -0.26 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -2.25 Total: -20.41 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.01 Total: -37.05 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.69 Total: 16.56 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.42 Total: -2.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.87 -9.50 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.552 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds